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Surveying the scope of aromatic decarboxylations catalyzed by prenylated-flavin dependent enzymes
Anushree Mondal ; Pronay Roy ; Jaclyn Carrannatto ; Prathamesh M. Datar ; Daniel J. DiRocco ; Katherine Huntera and E. Neil G. Marsh
Abstract: The prenylated-flavin mononucleotide-dependent decarboxylases (also known as UbiD-like enzymes) are the most recently discovered family of decarboxylases. The modified flavin facilitates the decarboxylation of unsaturated carboxylic acids through a novel mechanism involving 1,3-dipolar cyclo-addition chemistry. UbiD-like enzymes have attracted considerable interest for biocatalysis applications due to their ability to catalyse (de)carboxylation reactions on a broad range of aromatic substrates at otherwise unreactive carbon centres. There are now ∼35[thin space (1/6-em)]000 protein sequences annotated as hypothetical UbiD-like enzymes. Sequence similarity network analyses of the UbiD protein family suggests that there are likely dozens of distinct decarboxylase enzymes represented within this family. Furthermore, many of the enzymes so far characterized can decarboxylate a broad range of substrates. Here we describe a strategy to identify potential substrates of UbiD-like enzymes based on detecting enzyme-catalysed solvent deuterium exchange into potential substrates. Using ferulic acid decarboxylase (FDC) as a model system, we tested a diverse range of aromatic and heterocyclic molecules for their ability to undergo enzyme-catalysed H/D exchange in deuterated buffer. We found that FDC catalyses H/D exchange, albeit at generally very low levels, into a wide range of small, aromatic molecules that have little resemblance to its physiological substrate. In contrast, the sub-set of aromatic carboxylic acids that are substrates for FDC-catalysed decarboxylation is much smaller. We discuss the implications of these findings for screening uncharacterized UbiD-like enzymes for novel (de)carboxylase activity.
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Purchased from AmBeed: 27916-43-4 ; 2438-05-3 ; 501-89-3 ; 42287-94-5 ; 776-79-4 ; 53473-36-2 ; 7251-61-8 ; 42287-97-8 ; 1621-91-6 ; 37718-11-9 ; 288-13-1 ; 86-73-7 ; 104-53-0 ; 2018-90-8 ; 87-66-1 ; 135-19-3 ; 1664-57-9 ; 289-80-5 ; 693-95-8 ; 55-22-1 ; 102-93-2 ; 1477-50-5 ; 1632-76-4 ; 4780-79-4 ; 16642-79-8 ; 3581-89-3 ; 501-97-3 ; 771-50-6 ; 98-98-6 ; 619-64-7 ; 100-51-6 ; 402-45-9 ; 59-67-6 ; 93-60-7 ; 273-53-0 ; 2084-13-1 ; 51-17-2 ; 2459-09-8 ; 2459-07-6 ; 95-16-9 ; 459-31-4 ; 90-05-1 ; 150-76-5 ; 103-25-3 ; 271-44-3 ; 6293-56-7 ; 2550-26-7 ; 288-32-4 ; 501-52-0 ; 2001-32-3 ; 1592-38-7 ; 95-15-8 ; 91-19-0 ; 1122-61-8 ; 3724-19-4 ; 20173-24-4 ; 118-31-0 ; 6125-24-2 ; 60-12-8 ; 90-15-3 ; 120-72-9 ; 822-36-6 ; 288-47-1 ; 288-42-6 ; 2038-57-5 ; 38628-51-2 ; 1929-29-9 ; 15009-91-3 ; 1505-50-6 ; 581-40-8 ; 616-47-7 ; 1571-33-1
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CAS No. : | 90-15-3 |
Formula : | C10H8O |
M.W : | 144.17 |
SMILES Code : | OC1=C2C=CC=CC2=CC=C1 |
Synonyms : |
Furro ER; NSC 9586; Nako TRB
|
MDL No. : | MFCD00003930 |
InChI Key : | KJCVRFUGPWSIIH-UHFFFAOYSA-N |
Pubchem ID : | 7005 |
GHS Pictogram: | ![]() ![]() ![]() ![]() |
Signal Word: | Danger |
Hazard Statements: | H311-H302-H315-H318-H371-H335-H410 |
Precautionary Statements: | P501-P273-P260-P270-P271-P264-P280-P391-P308+P311-P361+P364-P332+P313-P301+P312+P330-P302+P352+P312-P304+P340+P312-P305+P351+P338+P310-P403+P233-P405 |
Class: | 6.1 |
UN#: | 2811 |
Packing Group: | Ⅲ |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With 1,2-ethanediylbis(triphenylphosphonium) ditribromide; In methanol; dichloromethane; at 20℃; for 0.0833333h; | General procedure: To a mixture of anilines or phenols (0.7 mmol) the brominatingagent (1) (0.72 g, 0.7 mmol) in dichloromethane(30 ml)-methanol (15 ml) was added. The reactionmixture was stirred at room temperature until decolorizationof the orange solution took place. The progress of thereaction was monitored by TLC (eluent: n-hexane/ethylacetate, 7:3). After completion of the reaction, the solventwas evaporated and diethyl ether (10 ml) was added to theresidue. The supernatant was decanted and the insolubleresidue was washed by ether (3 × 10 ml). The combinedether extracts were dried on magnesium sulfate and also evaporated under vacuum to afford monobromo anilines ormonobromo phenols which was purified by flash columnchromatography over silica gel (n-hexane/ethyl acetate,7:3). |
84% | With polyethylene glycol entrapped potassium tribromide; In neat (no solvent); for 0.2h;Green chemistry; | The bromination reactions were carried out in solvent free manner. In a typical reaction, PEG·KBr3 (1mmol, 4.3g) was added to the aromatic substrate (1mmol) in a mortar and was ground for the desired reaction time. The progress of the reaction was monitored by TLC (10% ethyl acetate/hexane). After completion of the reaction, the product was extracted with ethyl acetate and evaporated under vacuum to obtain the pure brominated product. The products were characterized by IR and NMR spectra (see Supporting information). |
72.4% | With N-Bromosuccinimide; In dichloromethane; at 40℃;Alkaline conditions; | 1-Naphthol (10 g, 69.36 mmol)and diisopropylamine (0.972 mL, 6.94 mmol) was dissolved indichloromethane (100 mL). N-Bromosuccinimide (13.58 g, 76.3 mmol)was carefully added and the reaction mixture was stirred at 40 Covernight. The resulting mixture was allowed to cool to roomtemperature, quenched with 2M H2SO4, and extracted withdichloromethane. The combined organic layer was dried overanhydrous sodium sulfate and concentrated in vacuo. The crudeproduct was purified by silica gel column eluting with petroleumether: ethyl acetate (20/1) to give the desired product (11.2 g, yield72.4%) as a white solid. 1H NMR (400 MHz, CDCl3) delta 8.23 - 8.21 (m,1H), 7.76 - 7.73 (m, 1H), 7.50 - 7.48 (m, 2H), 7.44 (d, J=8.8 Hz, 1H),7.28 (d, J=8.8 Hz, 1H), 5.97 (s, 1H). ESI-MS: [M-H]- m/z :221.0. |
70% | With tetrabutylammomium bromide; isoquinolinium chlorochromate; In water; at 25 - 30℃; for 5h; | General procedure: Phenol (1 mmol, 10 mL) dissolved in 1M PEG-600, isoquinolinium dichromate (IQDC) or isoquinolinium chlorochromate (IQCC) reagent, and tetrabutylammonium halide (TBAX) (1.1 mmol each) were taken in a reaction flask and refluxed with constant stirring at about 25 to 30 C, till the completion of reaction, as as certainedby thin layer chromatography. Then the contents of reaction were diluted with ethyl acetate (10 mL) and separated from aqueous layer. Organic layer was then washed two to three time swith 5 mL water and separated. Finally, the resultant mass is dried over sodium sulphate. The anhydrous ethyl acetate layerwas separated under reduced pressure to give crude product, which was further purified by column chromatography (silicagel, 100-200 mesh) using EtOAc-hexane (3:7). For the separation and recyclization of PEG, aqueous mother liquor (reaction mixture of PEG-600 and water) was treated with ether because PEG is insoluble in ether. The aqueous layer obtained after the removal of ether, was then distilled directly at 100 C to remove water and recover PEG-600. The recovered PEG-600 could be reused for consecutive runs. |
69% | With potassium hydrogensulfate; potassium bromide; isoquinolinium chlorochromate; In water; at 20℃; | General procedure: A centimolar (0.01mol) organic substrate (phenols, anilines,or acetanilides), about 0.01 mol of potassium halide (KBr orKI), 0.001 mol hypervalent Cr (VI) reagent (IQCC orIQDC), and solvent (DCE or ACN) were taken in a previouslycleaned round-bottom flask. About 50 mg of KHSO4 isalso added to the reaction flask. The reaction mixture isrefluxed for about 4-5 h at 50-60C. Progress of the reactionwas monitored by TLC technique. After completion, thereaction mixture is treated with 5% sodium thiosulfate solutionfollowed by the addition of ether. The aqueous layer wasseparated, dried, and evaporated under vacuum, and purifiedwith column chromatography using chloroform:n-hexane(9:1) as eluent to get pure product.General. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 2h; | To a solution of 1-naphthol (170 mg, 1.18 mmol) in anhydrous DMF (10 mL) was added K2CO3 (510 mg, 3.53 mmol) and ethyl alpha-bromocyclopropaneacetate (295 mg, 1.41 mmol). The mixture was stirred at room temperature for 2 h and then diluted with water (50 mL) and then extracted with ethyl acetate (3*50 mL). The organic extracts were combined, washed with brine, dried over anhydrous MgSO4, filtered, concentrated in vacuo and purified by flash column chromatography using a mixture of ethyl acetate and n-hexane (1:9) to furnish ethyl 2-cyclopropyl-2-(1-naphthalenyloxy)acetate (8, R=c-Pr, 296 mg, 93%) as a white solid. The ester (250 mg, 0.92 mmol) was dissolved in 20 mL THF: H2O (2:1) and then 3M NaOH (111 mg, 2.77 mmol) was added. The reaction was heated at 80 C. for 6 h. After cooling, the reaction mixture was quenched with 1N HCL to a pH ?7 and then extracted with chloroform. The organic extract was dried over anhydrous MgSO4, filtered, concentrated in vacuo and purified by flash column chromatography eluting with a mixture of ethyl acetate/n-hexane (a gradient of 2:1) to furnish 2-cyclopropyl-2-(1-naphthalenyloxy)acetic acid (41, R=c-Pr) (136 mg, 61%) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With potassium fluoride; In acetonitrile; at 20 - 25℃; for 2h; | Thetetrafluoro Phthalo nitrile 6.0 g (30mmol), and the potassium fluoride 15 g(1.2eq.) and acetonitrile 20ml were put in the reactor in which the entrance of100ml placing the thermometer was 4 and it was stirred and it cooled to 0. Here, alpha - naphthol 4.3 g(1.0eq.) waslittle by little injected. In 5 orless the mixture after the input end, after it reacted at 1 hour thetemperature was increased to 20 and itreacted 2 hours at 20 through 25. Thereaction mixture was emitted to water after the completion of reaction and the segregatedsolid was filtered and it took out. The obtained crude product was well wipedoff with the methanol and the compound (4-3) 7.2g of the white solid wasobtained (the yield 74percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | With di-isopropyl azodicarboxylate; triphenylphosphine; In toluene; at 80℃; for 3h; | General procedure: To a stirred solution of 39 (0.100g, 0.433mmol), appropriate substituted phenol (0.649mmol) and PPh3 (0.182g, 0.693mmol) in anhydrous toluene (5mL) was added DIAD (0.14mL, 0.693mmol) at 80C. After 3h, EtOAc (40mL) was added to the resulting solution. The organic layer was washed with 0.5M aqueous NaOH (40mL) and water (2×40mL), dried over Na2SO4, filtered and concentrated. The residue was purified by flash silica gel column chromatography eluting with Hexanes/EtOAc (9:1) or (95:5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | General procedure: To a mixture of compound 3(1.5 mmol) and 3M HCl (1.53 mL) at 0 °C, a solution of sodium nitrite (NaNO2, 1.58mmol) in water (3 mL) was added dropwise while maintaining the temperaturebelow 5 °C. After stirring for 30 min, asolution of diazonium chloride was prepared. Subsequently, a solution ofdiazonium chloride was added gradually to a mixture of phenols/anilines (4a,b; 6a?f;8a?k or 9a?e, 1.5 mmol), and ethanol (3 mL) at 0-5 °C. The reaction mixture was adjusted to pH 8-9 with 1 Maq. NaOH. After addition, the mixture was continued to stir for 3-6 h. Thesolid was collected, washed with water (3×15 mL), dried and purified by PTLC orsilica gel column chromatography to give the target products IIa?x. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94.8% | With potassium carbonate; In acetonitrile; at 80℃; for 12h;Inert atmosphere; | In a 250 mL three-necked flask, 1-naphthol 6.00 g, F 9.75 g, and potassium carbonate 20.70 g were added.The nitrogen gas is circulated for 3 to 5 times by continuous vacuuming, and oxygen and water in the system are discharged to reach a nitrogen atmosphere.Then, 70 mL of anhydrous CH3CN was added as a solvent, and the mixture was stirred at 80 ° C for 12 hours.After the reaction is completed, the reaction is stopped.The temperature of the reaction system was cooled to room temperature.250 mL of water was added to the reaction solution, and the solid was dissolved. Extract with ethyl acetate, with water,Washed with saturated NaHCO3 solution, saturated NaCl solution, dried over anhydrous magnesium sulfate, filtered and evaporated.A pale red wine viscous liquid of 8.25 g was obtained with a yield of 94.8percent. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With trimethylamine; In ethanol; water; for 2h;Reflux; | General procedure: A mixture of 20 mmol of naphthol 9 or 10, 10 mL of aqueous trimethylamine, 20 mmol of ethyl cyanoacetate (7) or malononitrile (8), and 20 mmol of substituted isatin 1-6 in 80 mL of ethanol was refluxed for 2 h with stirring. A part of the solvent (40 mL) was distilled off, the residue was cooled, and the crystalline solid was filtered off and recrystallized from ethanol. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
46% | With trimethylamine; In ethanol; water; for 2h;Reflux; | General procedure: A mixture of 20 mmol of naphthol 9 or 10, 10 mL of aqueous trimethylamine, 20 mmol of ethyl cyanoacetate (7) or malononitrile (8), and 20 mmol of substituted isatin 1-6 in 80 mL of ethanol was refluxed for 2 h with stirring. A part of the solvent (40 mL) was distilled off, the residue was cooled, and the crystalline solid was filtered off and recrystallized from ethanol. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59% | With sodium carbonate; In ethanol; water; at 25.0℃; for 7.0h; | General procedure: Imidazo[1,2-a]pyrimidine-2-carbaldehyde [40] (100 mg,0.68 mmol, 1.0 equiv.), 58 mg malononitrile (0.88 mmol, 1.3equiv.), and enolizable compounds (0.88 mmol, 1.3 equiv.)were dissolved in 5 cm3water or a mixture of water:ethylalcohol (4:1). Sodium carbonate (0.88 mmol, 93 mg, 1.3equiv.) in 2 cm3water was added and the mixture was stirredat room temperature for various times (2-7 h). The reactionprocess was monitored with thin layer chromatographyusing different ratio of hexane:ethyl acetate mixture assolvent. After completion of the reaction, the mixture waspoured into brine solution and stirred for 15 min. The resultingsolid was suction filtered using filter paper with smallpore size and washed with water. The pure products 4a-4gwere obtained by crystallization or washing with varioussolvents. Products were stored under argon atmosphere toprevent decomposition. |
Tags: 90-15-3 synthesis path| 90-15-3 SDS| 90-15-3 COA| 90-15-3 purity| 90-15-3 application| 90-15-3 NMR| 90-15-3 COA| 90-15-3 structure
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* Additional Information :
Total Compounds: mg
The concentration of the dissolution solution you need to prepare is mg/mL