Structure of 2369-29-1
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 2369-29-1 |
Formula : | C6H6F2N2 |
M.W : | 144.12 |
SMILES Code : | NC1=CC(F)=CC(F)=C1N |
MDL No. : | MFCD00973899 |
Boiling Point : | No data available |
InChI Key : | QGNXDMSEEPNKCF-UHFFFAOYSA-N |
Pubchem ID : | 2736754 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 35.17 |
TPSA ? Topological Polar Surface Area: Calculated from |
52.04 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.98 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.76 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.99 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.68 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.26 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.33 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.66 |
Solubility | 3.18 mg/ml ; 0.0221 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.43 |
Solubility | 5.32 mg/ml ; 0.0369 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.21 |
Solubility | 0.881 mg/ml ; 0.00611 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.64 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.21 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
46% | With hydrogenchloride; tin; for 1.5h;Reflux; | Concentrated hydrochloric acid (10 mL) was slowly added dropwise to a mixture of difluoronitroaniline 7 (1.6 g, 9 mmol) and tin (22.5mmol). The reaction mixture was heated at reflux for 1.5 h, cooled tor.t., and neutralized with 50% NaOH solution to pH 9-10. The precipitate was filtered, dried, and extracted with hot EtOAc (80 mL). Afterevaporation of the filtrate, diamine 9 was obtained.Yield: 0.60 g (46%); brown crystals; mp 55-57 C; Rf 0.86. |
palladium; | a) 1,2-Diamino-3,5-difluorobenzene was obtained by hydrogenation of 5 g of 2-amino-3,5-difluoronitrobenzene with 0.8 g of palladium catalyst on carbon at RT and normal pressure. After distilling off the solvent, a dark partially crystalline oil was obtained, which was used without further purification for the preparation of stage b. | |
With hydrogen;palladium 10% on activated carbon; In ethanol; at 20℃; for 2h; | Preparation of (S)-(2-(3,5-dichlorobenzyl)pyrrolidin-1-yl)(5,7-difluoro-3-hydroxyquinoxalin-2-yl)methanone (9-16); Step 1: 10% Pd/C (100 mg) was added a solution in compound 9-11 (500 mg, 2.87 mmol) in EtOH (50 mL). The resulting suspension was stirred under a H2 balloon at room temperature for 2 h. The mixture was filtered through Celite and the filtrate was concentrated in vacuo to give desired product 9-12. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With sodium hydrogensulfite; In ISOPROPYLAMIDE; at 120℃; for 21h; | Aldehyde 1e (2.05 g, 4.28 MMOL), 1,2-diamino-3, 5-difluorobenzene (617 mg, 4.28 MMOL) and sodium bisulfite (891 mg, 8.57 MMOL) were dissolved in N, N-DIMETHYLACETAMIDE (43 mL) and heated in a 120 C oilbath for 21 hours. After cooling to room temperature, the mixture was diluted with ethyl acetate (100 mL) and washed with half-saturated aqueous sodium chloride solution (75 mL, a 1: 1 mixture of deionized water and saturated aqueous sodium chloride solution). The aqueous layer was back-extracted with ethyl acetate (2 x 100 mL). All the organic extracts were combined, dried over magnesium sulfate, and concentrated to a brown tar (3.39 G). This crude material was purified by silica gel chromatography (eluting with a gradient of 70% to 100% ethyl acetate in hexanes), to give benzoimidazole product 1f (2.11 g, 81%) as a tan foam : 1H NMR (CD30D) S 8.46 (s, 1H), 8.41 (s, 1H), 8.29 (s, 1H), 7.87 (d, J = 8.6 Hz, 1H), 7.46 (dd, J=1. 3, 8. 6 Hz, 1H), 7.13 (m, 1H), 6.84 (m, 1H), 5.99 (dd, J=2. 3,9. 9 Hz, 1 H), 4.60 (s, 2H), 4.01 (m, 1 H), 3.86 (m, 1 H), 3.32 (m, 2H, obscured by solvent peak) 2.67 (m, 1H), 2.28 (s, 3H), 2.18 (m, 2H), 1.89 (m, 1H), 1.73 (m, 2H), 1.47 (s, 9H), 1.13 (t, J=7. 1 Hz, 1H). Anal. (C33H36F2N603-0. 4 H2O) C, H, N, F. |
81% | With sodium hydrogensulfite; In N,N-dimethyl acetamide; at 120℃; for 21h; | Aldehyde 1e (2.05 g, 4.28 mmol), 1 ,2-diamino-3,5-difluorobenzene (617 mg, 4.28 mmol) and sodium bisulfite (891 mg, 8.57 mmol) were dissolved in N,N-dimethylacetamide (43 mL) and heated in a 120 0C oilbath for 21 hours. After cooling to room temperature, the mixture was diluted with ethyl acetate (100 mL) and washed with half -saturated aqueous sodium chloride solution (75 mL, a 1 :1 mixture of deionized water and saturated aqueous sodium chloride solution). The aqueous layer was back-extracted with ethyl acetate (2 x 100 mL). All the organic extracts were combined, dried over magnesium sulfate, and concentrated to a brown tar (3.39 g). This crude material was purified by silica gel chromatography (eluting with a gradient of 70% to 100% ethyl acetate in hexanes), to give benzoimidazole product If (2.11 g, 81%) as a tan foam: 1H NMR (CD3OD) delta 8.46 (s, 1 H), 8.41 (s, 1 H), 8.29 (s, 1H), 7.87 (d, J = 8.6 Hz, 1 H)1 7.46 (dd, J =1.3, 8.6 Hz1 1 H)1 7.13 (m, 1H)1 6.84 (m, 1 H)1 5.99 (dd, J =2.3, 9.9 Hz, 1 H)1 4.60 (s, 2H), 4.01 (m, 1 H)1 3.86 (m, 1 H)1 3.32 (m, 2H1 obscured by solvent peak) 2.67 (m, 1 H)1 2.28 (s, 3H), 2.18 (m, 2H), 1.89 (m, 1 H), 1.73 (m, 2H), 1.47 (s, 9H)1 1.13 (t, J =7.1 Hz1 1 H). Anal. (C33H36F2N6O3-O^ H2O) C, H1 N1 F. (g) Example |
81% | With sodium hydrogensulfite; In N,N-dimethyl acetamide; at 120℃; for 21h; | (d) Intermediate 1f - {5-[3-(4,6-Difluoro-1/-/-benzoimidazol-2-yl)-1-(tetrahydro-pyran-2-yl)-1H-indazol- 5-yl]-4-methyl-pyridin-3-ylmethyl}-ethyl-carbamic acid tert-butyl ester; Aldehyde 1e (2.05 g, 4.28 mmol), <strong>[2369-29-1]1,2-diamino-3,5-difluorobenzene</strong> (617 mg, 4.28 mmol) and sodium bisulfite (891 mg, 8.57 mmol) were dissolved in N,N-dimethylacetamide (43 mL) and heated in a 120 0C oilbath for 21 hours. After cooling to room temperature, the mixture was diluted with ethyl acetate (100 mL) and washed with half-saturated aqueous sodium chloride solution (75 mL, a 1:1 mixture of deionized water and saturated aqueous sodium chloride solution). The aqueous layer was back-extracted with ethyl acetate (2 x 100 mL). All the organic extracts were combined, dried over magnesium sulfate, and concentrated to a brown tar (3.39 g). This crude material was purified by silica gel chromatography (eluting with a gradient of 70% to 100% ethyl acetate in hexanes), to give benzoimidazole product 1f (2.11 g, 81%) as a tan foam: 1H NMR (CD3OD) delta 8.46 (s, 1 H), 8.41 (s, 1 H), 8.29 (s, 1 H), 7.87 (d, J = 8.6 Hz, 1 H), 7.46 (dd, J =1.3, 8.6 Hz, 1H), 7.13 (m, 1H), 6.84 (m, 1H), 5.99 (dd, J =2.3, 9.9 Hz, 1H), 4.60 (s, 2H), 4.01 (m, 1H), 3.86 (m, 1H), 3.32 (m, 2H, obscured by solvent peak) 2.67 (m,1H), 2.28 (s, 3H), 2.18 (m, 2H), 1.89 (m, 1 H), 1.73 (m, 2H), 1.47 (s, 9H), 1.13 (t, J =7.1 Hz, 1H). Anal. (C33H36F2N6O3-O^ H2O) C, H, N, F. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; | b) 1-(2-Amino-4,6-difluorophenyl)-3-(2,6-dichlorophenyl)thiourea was obtained by allowing a mixture of 0.01 M <strong>[2369-29-1]1,2-diamino-3,5-difluorobenzene</strong> with 0.01 M 2,6-dichlorophenyl isothiocyanate in 60 ml of anhydrous THF to stand over the weekend at RT. After distilling off the solvent, the thiourea was brought to crystallization under diisopropyl ether. Crystalline solid, m.p.: 310-314 C. MS (Cl+, M+H+): 348.1 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | Compound 57:; Chiral To a 5.5 N HCI solution (7.2 mL) of 1 ,2-diamino-3,5-difluorobenzene (1.04 g, 7.19 mmol) was added D-aspartic acid (1.44 g, 10.8 mmol). The mixture was refluxed for overnight. The reaction crude was purified by prep. HPLC to give the title compound as an acetic acid salt in 57% yield. 1H NMR (DMSO- d6): delta 7.22 (1 H, dd, J=8.6, 2Hz), 7.02 (1 H, td, J=10.6, 2Hz), 4.21 (1 H, t, J=6.3Hz), 3.44 (1 H, dd, J=16.2, 5.6Hz), 3.29 (1 H, dd, J=16.4, 7Hz). LCMS (API-ES): 242.1 (M+H+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In methanol; at 20℃; for 6h; | Intermediate 195: 5,7-Difluoroquinoxalin-2(lH)-one and 6,8-difluoroquinoxalin-2dH)-oneTo a solution of l,2-diamino-3,5-difluorobenzene (5.11 g) in methanol (100 mL) was added ethylglyoxalate (16 mL). After 6 hours at room temperature, the precipitate was collected by filtration and washed with methanol yielding 2.1 g products, 1:1 mixture of 5,7- difluoroquinoxalin-2(lH)-one and 6,8-difluoroquinoxalin-2(lH)-one. MS (ESD 182 (MH+) for C8H4F2N2O |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium carbonate; In hydrogenchloride; chloroform; | (a) (4,6-Difluoro-1H-benzimidazol-2-yl)-methylamine A mixture of glycine (2.0 g) and 3,5-difluoro-benzene-1,2-diamine in 5M hydrochloric acid (5 mL) was heated under reflux for 18 hours and evaporated. Sodium carbonate solution was added to pH 10 and the solution was extracted with dichloromethane. The aqueous fraction was evaporated to dryness and the residue was extracted with 5% methanol in chloroform, dried and evaporated to give a foam (0.6 g). MS (+ve ion electrospray) m/z 184 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | To a solution of 4-amino-5-(4-aminophenyl)-Lambda/-(2,2,2-trifluoroethyl)pyrrolo[2,1- f][1,2,4]triazine-6-carboxamide (200 mg, 0.673 mmol) in DMF (5 mL) and THF (5 ml_) was added 1,1'-thiocarbonyldiimidazole (125 mg, 0.706 mmol). The reaction was stirred at it for 3 hr and then 1 ,2-diamino-3,5-difluorobenzene (101 mg, 0.706 mmol) was added. Stirring was continued overnight and then N.N'-diisopropylcarbodiimide ( 0.527 ml, 3.36 mmol) was added dropwise. The reaction was again allowed to stir overnight and then the mixture was concentrated under reduced pressure. The crude residue was purified by HPLC using 25-85% acetonitrile/water to give the desired product (205 mg, 68%); 1H NMR (300 MHz, DMSO-alphafe) .delta11.31 -11.40 (br S, 1 H), 9.75-9.83 (br S, 1 H)1 8.14 (s, 1 H), 8.02- 8.13 (br s, 1 H), 7.93 (s, 1 H), 7.82 (d, J= 8.6 Hz, 2 H)1 7.35 (d, J= 8.6 Hz, 2 H), 6.94-7.05 (br d, 1 H), 6.86 (ddd, J = 10.7, 10.7, 2.2 Hz, 1 H), 5.15-5.46 (br s, 1 H), 4.08 (q, J = 7.1 Hz, 2 H), 1.10 (t, J== 7.1 Hz, 3 H); ES-MS m/z 450.1 (MH)+; HPLC RT (Method A) 2.48 min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In ethanol; for 5h;Reflux; | Step 2: Compound 9-12 (0.35 g, 2.43 mmol) and diethyl ketomalonate (0.39 mL, 2.55 mmol) were mixed in EtOH (7 mL). The resulting solution was heated to reflux for 5 h. The mixture was cooled to room temperature and concentrated. The residue was purified by column chromatography (silica gel, eluted with 5% EtOAc/hexanes, 20% EtOAc/hexanes, 30% EtOAc/hexanes) to give the desired compound 9-13 and 9-14. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With Oxone; acetic acid; In N,N-dimethyl-formamide; at 80℃; for 16h; | To a solution of 4-(5-(3-fluoro-4-formylphenyl)pyridin-2- yloxy)bicyclo[2.2.2]octane-l -carboxylic acid (Intermediate 1 , 35 mg, 0.095 mmol, 1 equiv) and 3,5-difluorobenzene-l ,2-diamine (28 mg, 0.191 mmol, 2.0 equiv) in 2%HOAc/DMF (1.5 mL) was added Oxone (58 mg, 0.095 mmol, 1 equiv). The reaction was agitated at 80 C for 16 hours at which point it was complete by LCMS analysis. The solution was neutralized with K2CO3 (60 mg) and was extracted between EtOAc (4 mL x 2) and water (2 mL). The organic phase was combined and evaporated under vacuum. DMSO (1.5 mL) was added to the residue. The crude product was purified with reversed- phase HPLC (Gilson, ACN with 0.05% TFA / H20 with 0.05% TFA: 10% ~ 80%) to give the product as a yellow solid. LCMS calc'd [MH]+ m/z 494; found m/z 494. |
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