Structure of 394-69-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Systematic analysis of gut bacterial carcinogen metabolism and its functional consequences
Boyao Zhang ; George-Eugen Maftei ; Bartosz Bartmanski ; Michael Zimmermann ;
Abstract: Organic carcinogens, in particular DNA-reactive compounds, contribute to the irreversible initiation step of tumorigenesis through introduction of genomic instability. Although carcinogen bioactivation and detoxification by human enzymes has been extensively studied, carcinogen biotransformation by human-associated bacteria, the microbiota, has not yet been systematically investigated. We tested the biotransformation of 68 mutagenic carcinogens by 34 bacterial species representative for the upper and lower human gastrointestinal tract and found that the majority (41) of the tested carcinogens undergo bacterial biotransformation. To assess the functional consequences of microbial carcinogen metabolism, we developed a pipeline to couple gut bacterial carcinogen biotransformation assays with Ames mutagenicity testing and liver biotransformation experiments. This revealed a bidirectional crosstalk between gut microbiota and host carcinogen metabolism, which we validated in gnotobiotic mouse models. Overall, the systematic assessment of gut microbiota carcinogen biotransformation and its interplay with host metabolism highlights the gut microbiome as an important modulator of exposome-induced tumorigenesis.
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Purchased from AmBeed: 446-86-6 ; 121-66-4 ; 607-35-2 ; 67-20-9 ; 105650-23-5 ; 59-87-0 ; 117-39-5 ; 57-97-6 ; 5131-60-2 ; 512-56-1 ; 62-44-2 ; 6959-48-4 ; 84-65-1 ; 137-17-7 ; 117-39-5 ; 153-78-6 ; 1614-12-6 ; 298-81-7 ; 404-86-4 ; 320-67-2 ; 99-55-8 ; 94-52-0 ; 2832-40-8 ; 101-61-1 ; 103-33-3 ; 114-83-0 ; 64091-91-4 ; 53-96-3 ; 3817-11-6 ; 90-94-8 ; 613-13-8 ; 56-57-5 ; 91-64-5 ; 26148-68-5 ; 101-80-4 ; 139-65-1 ; 366-70-1 ; 389-08-2 ; 99-59-2 ; 132-32-1 ; 394-69-4 ; 3544-23-8 ; 389-08-2 ; 320-67-2 ; 82-28-0 ; 2475-45-8 ; 129-15-7
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CAS No. : | 394-69-4 |
Formula : | C9H6FN |
M.W : | 147.15 |
SMILES Code : | FC1=CC=CC2=C1C=CC=N2 |
MDL No. : | MFCD01685511 |
InChI Key : | WMFXCDGQRHJFKL-UHFFFAOYSA-N |
Pubchem ID : | 115243 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H320-H335 |
Precautionary Statements: | P261-P280-P301+P312-P302+P352-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 10 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 41.7 |
TPSA ? Topological Polar Surface Area: Calculated from |
12.89 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.86 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.94 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.79 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.27 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.91 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.35 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.65 |
Solubility | 0.332 mg/ml ; 0.00225 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.84 |
Solubility | 2.15 mg/ml ; 0.0146 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.96 |
Solubility | 0.0162 mg/ml ; 0.00011 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.82 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.57 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | With tetrafluoroboric acid; sodium nitrite; at 0℃; for 1h; | Preparation LIII 5-fluoro-1,2,3,4-tetrahydroquinoline [0363] 5-fluoroquinoline [0364] To a suspension of 5-aminoquinoline (50 g, 347 mmol) in 48percent HBF4 (200 mL) at 0° C. was added portionwise sodium nitrite. This was stirred for 1 hour and then poured into 1:1 ethyl acetate/diethyl ether (500 mL). The resulting suspension was filtered and the solid dried. This solid (82.5 g, 338 mmol) was added portionwise to refluxing xylene (1 L) and stirred for 2 hours then allowed to cool. The xylene was decanted off and the residue dissolved in 1N hydrochloric acid (600 mL). After neutralization with sodium carbonate, the mixture was extracted with ethyl acetate (10.x.500 mL). The extracts were dried over sodium sulfate, filtered and the volatiles removed under reduced pressure. The residue was subjected to silica gel chromatography, eluting with 10-20percent diethyl ether in hexanes. Fractions containing product were combined and concentrated under reduced pressure to provide 28.1 g (55percent) of the desired compound. MS (EI, m/z) C9H6FN (M+1) 148.0 [0365] Reduction [0366] A mixture of 5-fluoroquinoline (28.1 g), 5percent palladium on carbon (5.6 g) in methanol was shaken over night at 40° C. under 60 psi hydrogen. The mixture was filtered through celite and concentrated under reduced pressure. The residue was subjected to silica gel chromatography, eluting with 5-10percent ethyl acetate in hexanes. Fractions containing product were combined and concentrated under reduced pressure to provide 22.5 g (78percent) of the title compound. [0367] MS (EI, m/z) C9H10FN (M+1) 152.0 |
24.5% | With tetrafluoroboric acid; sodium nitrite; In xylene; at 0℃;Reflux; | To a suspension of 5-aminoquinoline (lO.Og, 0.069 mol) in 48percent HBF4 (40 mL) at 0°C was added portionwise sodium nitrite. This was stirred for 1 hour and then poured into 1 : 1 ethyl acetate/diethyl ether (50 mL). The resulting suspension was filtered and the solid dried. This solid was added portionwise to refluxing xylene (80 mL) and stirred for 2 hours then allowed to cool. The xylene was decanted off and the residue was dissolved in IN aqueous hydrochloric acid (100 mL). After neutralization with sodium carbonate, the mixture was extracted with ethyl acetate (3 x 80 mL). The extracts were dried over sodium sulfate, filtered and the volatiles were removed in vacuo. The residue was purified by silica gel column chromatography, eluting with 2percent ethyl acetate in petroleum ether to afford 5-fluoroquinoline as a colorless oil (2.5 g, 24.5percent).'H-NMR (300 MHz, CDC13) delta 8.93 - 8.98 (m, 1H), 8.43 - 8.46 (m, H), 7.92 (d, / = 8.4 Hz, 1H), 7.62 - 7.78 (m, 1H), 7.41 - 7.49 (m, 1H), 7.22 - 7.26 (m, 1H) |
800 mg | With tetrafluoroboric acid; sodium nitrite; at 0℃; for 1h; | To a solution of quinolin-5 -amine (2 g, 13.9 mmol) in 10 mL of 48percent HBF4 at 0°C was added sodium nitrite (933 mg, 13.5 mmol) portionwise. This was stirred for 1 hour and then poured into 1 : 1 ethyl acetate diethyl ether mixture (50 mL). The resulting suspension was filtered and the solid was dried. This solid was added portionwise to refluxing xylene (30 mL) and stirred for 3 hours, then allowed to cool. The xylene was decanted off and the residue was dissolved in IN HC1 (50 mL). After neutralization with NaHC03, the mixture was extracted with ethyl acetate (3 x 50 mL). The extracts were dried over sodium sulfate, filtered and the volatiles were removed under reduced pressure. The residue was purified by silica gel chromatography (3percent EtOAc/PE) to afford 800 mg of title compound as colorless oil. LC-MS: m/z 148.2 (M+H)+ |
800 mg | With tetrafluoroboric acid; sodium nitrite; at 0℃; for 1h; | To a solution of quinolin-5-amine (2 g, 13.9 mmol) in 10 mL of 48percent HBF4 at 0° C. was added sodium nitrite (933 mg, 13.5 mmol) portionwise. This was stirred for 1 hour and then poured into 1:1 ethyl acetate diethyl ether mixture (50 mL). The resulting suspension was filtered and the solid was dried. This solid was added portionwise to refluxing xylene (30 mL) and stirred for 3 hours, then allowed to cool. The xylene was decanted off and the residue was dissolved in 1N HCl (50 mL). After neutralization with NaHCO3, the mixture was extracted with ethyl acetate (3×50 mL). The extracts were dried over sodium sulfate, filtered and the volatiles were removed under reduced pressure. The residue was purified by silica gel chromatography (3percent EtOAc/PE) to afford 800 mg of title compound as colorless oil. LC-MS: m/z 148.2 (M+H)+ |
800 mg | With tetrafluoroboric acid; sodium nitrite; at 0℃; for 1h; | To a solution of quinolin-5 -amine (2 g, 13.9 mmol) in 10 mL of 48percent HBF4 at 0°C was added sodium nitrite (933 mg, 13.5 mmol) portionwise. This was stirred for 1 hour and then poured into 1 : 1 ethyl acetate diethyl ether mixture (50 mL). The resulting suspension was filtered and the solid was dried. This solid was added portionwise to refluxing xylene (30 mL) and stirred for 3 hours, then allowed to cool. The xylene was decanted off and the residue was dissolved in IN HC1 (50 mL). After neutralization with NaHC03, the mixture was extracted with ethyl acetate (3 x 50 mL). The extracts were dried over sodium sulfate, filtered and the volatiles were removed under reduced pressure. The residue was purified by silica gel chromatography (3percent EtOAc/PE) to afford 800 mg of title compound as colorless oil. LC-MS: m/z 148.2 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With hydrogen;5%-palladium/activated carbon; In methanol; at 40℃; under 3102.97 Torr; | Reduction; Shake a mixture of <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (28.1 g) and 5percent palladium on carbon (5.6 g) in methanol over night at 40°C under 60 psi hydrogen. Filter the mixture through Celite and concentrate under reduced pressure. Subject the residue to silica gel chromatography, eluting with 5-10percent ethyl acetate in hexanes. Combine fractions containing product and concentrate them under reduced pressure to provide the title compound (22.5 g, 78percent). MS (EI, m/z) CgHloFN (M+1) 152.0 |
78% | With hydrogen;5% palladium over charcoal; In methanol; at 40℃; under 3102.97 Torr;Under hydrogen; | Preparation LIII 5-fluoro-1,2,3,4-tetrahydro<strong>[394-69-4]quinoline</strong> [0363] <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> [0364] To a suspension of 5-amino<strong>[394-69-4]quinoline</strong> (50 g, 347 mmol) in 48percent HBF4 (200 mL) at 0° C. was added portionwise sodium nitrite. This was stirred for 1 hour and then poured into 1:1 ethyl acetate/diethyl ether (500 mL). The resulting suspension was filtered and the solid dried. This solid (82.5 g, 338 mmol) was added portionwise to refluxing xylene (1 L) and stirred for 2 hours then allowed to cool. The xylene was decanted off and the residue dissolved in 1N hydrochloric acid (600 mL). After neutralization with sodium carbonate, the mixture was extracted with ethyl acetate (10.x.500 mL). The extracts were dried over sodium sulfate, filtered and the volatiles removed under reduced pressure. The residue was subjected to silica gel chromatography, eluting with 10-20percent diethyl ether in hexanes. Fractions containing product were combined and concentrated under reduced pressure to provide 28.1 g (55percent) of the desired compound. MS (EI, m/z) C9H6FN (M+1) 148.0 [0365] Reduction [0366] A mixture of <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (28.1 g), 5percent palladium on carbon (5.6 g) in methanol was shaken over night at 40° C. under 60 psi hydrogen. The mixture was filtered through celite and concentrated under reduced pressure. The residue was subjected to silica gel chromatography, eluting with 5-10percent ethyl acetate in hexanes. Fractions containing product were combined and concentrated under reduced pressure to provide 22.5 g (78percent) of the title compound. [0367] MS (EI, m/z) C9H10FN (M+1) 152.0 |
70% | With hydrogen;palladium 10% on activated carbon; In methanol; at 20℃; | Palladium on carbon (10percent, 1.25 g) was added to a solution of <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (2.5 g, 16.99 mmol) in methanol and the reaction was overnight at room temperature under an atmosphere of hydrogen. The reaction mixture was filtered through Celite and concentrated in vacuo to afford 5-fluoro-l ,2,3,4-tetrahydro<strong>[394-69-4]quinoline</strong> as a colorless oil (1.80 g, 70 percent).LC/MS (ES, m/z) [M+H]+ 152.0'H-NMR (300 MHz, CDCI3) delta 6.87 - 6.95 (m, 2H), 6.26 - 6.40 (m, 2H), 3.28 - 3.31 (m, 2H), 2.72 - 2.77 (t, / = 6.60 Hz, 2H), 1.92 - 1.98 (m, 2H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | In xylene; for 2h;Heating / reflux; | Preparation 1 5-fluoro-1, 2,3, 4-tetrahydroquinoline; 5-fluoroquinoline; Add sodium nitrite in portions to a suspension of 5-aminoquinoline (50 g, 347 mmol) in 4Spercent HBF4 (200 mL) at 0°C. Stir for 1 hour and then pour into 1: 1 diethyl ether/ethyl acetate (500 mL). Filter the resulting suspension and dry the solid. Add this solid (82.5 g, 338 mmol) in portions to refluxing xylene (1 L), stir for 2 hours, and then cool. Decant the xylene and dissolve the residue in 1N hydrochloric acid (600 mL). Neutralize with sodium carbonate, extract with ethyl acetate (10 x 500 mL), dry the extracts over sodium sulfate, filter and concentrate under reduced pressure. Subject the residue to silica gel chromatography, eluting with 10-20percent diethyl ether in hexanes. Combine fractions containing product and concentrate them under reduced pressure to provide the desired compound (28.1 g, 55percent). MS (EI, m/z) C9H6FN (M+1) 148.0 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
a) 1-Benzoyl-2-cyano-5-fluoro-1,2-dihydro<strong>[394-69-4]quinoline</strong> (Compound 78A) The title compound was prepared as described for compound 32A, but starting from <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (WO 0144247) instead of 6-methyl<strong>[394-69-4]quinoline</strong>. (46percent) 1H-NMR (delta): 6.13-6.22 (m; 1H), 6.41 (d; 1H), 6.79-7.02 (m; 2H), 7.18-7.37 (m; 7H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
400 mg | With chlorosulfonic acid; at 0 - 130℃; | <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (800 mg, 5.4 mmol) was added slowly to 10 mL of chlorosulfonic acid at 0°C. When the addition was complete, the reaction mixture was heated at 130°C overnight. The solution was allowed to cool and was slowly poured over ice. The aqueous layer was extracted with ethyl acetate (3 x 50 mL). The combined organic extracts were dried and evaporated to give the crude product, which was purified by column chromatography (5percent EtOAc/PE) to afford 400 mg of title compound. 1H NMR (CHLOROFORM-d) delta: 7.40 (t, J = 8.46 Hz, 1 H), 7.74 (dd, J = 8.60, 4.30 Hz, 1 H), 8.55 - 8.64 (m, 2 H), 9.32 (dd, J = 4.30, 1.88 Hz, 1 H). LC-MS: m/z 4 246 (M+H)+ |
400 mg | With chlorosulfonic acid; at 0 - 130℃; | <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (800 mg, 5.4 mmol) was added slowly to 10 mL of chlorosulfonic acid at 0° C. When the addition was complete, the reaction mixture was heated at 130° C. overnight. The solution was allowed to cool and was slowly poured over ice. The aqueous layer was extracted with ethyl acetate (3×50 mL). The combined organic extracts were dried and evaporated to give the crude product, which was purified by column chromatography (5percent EtOAc/PE) to afford 400 mg of title compound. 1H NMR (CHLOROFORM-d) delta: 7.40 (t, J=8.46 Hz, 1H), 7.74 (dd, J=8.60, 4.30 Hz, 1H), 8.55-8.64 (m, 2H), 9.32 (dd, J=4.30, 1.88 Hz, 1H). LC-MS: m/z 4 246 (M+H)+ |
400 mg | With chlorosulfonic acid; at 0 - 130℃; | <strong>[394-69-4]5-fluoro<strong>[394-69-4]quinoline</strong></strong> (800 mg, 5.4 mmol) was added slowly to 10 mL of chlorosulfonic acid at 0°C. When the addition was complete, the reaction mixture was heated at 130°C overnight. The solution was allowed to cool and was slowly poured over ice. The aqueous layer was extracted with ethyl acetate (3 x 50 mL). The combined organic extracts were dried and evaporated to give the crude product, which was purified by column chromatography (5percent EtOAc/PE) to afford 400 mg of title compound. 1H NMR (CHLOROFORM-d) delta: 7.40 (t, J = 8.46 Hz, 1 H), 7.74 (dd, J = 8.60, 4.30 Hz, 1 H), 8.55 - 8.64 (m, 2 H), 9.32 (dd, J = 4.30, 1.88 Hz, 1 H). LC-MS: m/z 4 246 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With trimethylsilyl trifluoromethanesulfonate; In acetonitrile; at 24℃; for 0.333333h; | General procedure: To a stirred solution of 5-nitro<strong>[394-69-4]quinoline</strong> (8a, 103 mg, 0.59 mmol) and 2,2-dimethyl-3-ethoxycyclobutanone (7a, 92.5 mg, 0.65 mmol) in dry acetonitrile (2 mL) was addedMe3SiOTf (0.12 mL, 0.65 mmol) at 24 °C and the mixture was stirred for 20 min at the sametemperature. The reaction was quenched by adding aqueous solution of potassium sodium(+)-tartrate and the resulting mixture was extracted with ethyl acetate (three times). The combinedorganic extracts were washed with brine, dried over anhydrous sodium sulfate, filtered, andconcentrated. The crude product was purified by column chromatography on silica gel (13.7 g,hexane/ethyl acetate = 3:1 to 1:1) to afford 9a (101.4 mg, 0.375 mmol, 64percent). |