Structure of 6627-22-1
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CAS No. : | 6627-22-1 |
Formula : | C6H5ClN2O2 |
M.W : | 172.57 |
SMILES Code : | O=C(C1=NC=NC(Cl)=C1)OC |
MDL No. : | MFCD08689467 |
InChI Key : | IAEUEOUJKNGPMO-UHFFFAOYSA-N |
Pubchem ID : | 245927 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 38.32 |
TPSA ? Topological Polar Surface Area: Calculated from |
52.08 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.62 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.35 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.92 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.15 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.38 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.08 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.03 |
Solubility | 1.6 mg/ml ; 0.00929 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.05 |
Solubility | 1.55 mg/ml ; 0.009 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.34 |
Solubility | 0.789 mg/ml ; 0.00457 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.39 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.76 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With caesium carbonate; In DMF (N,N-dimethyl-formamide); at 20℃; for 5h; | 868 mg (4.763 MMOL) 6-CHLORO-PYRIMIDINE-4-CARBOXYLIC acid methyl ester are suspended in 10 ml of DMF together with 1 g (4.763 MMOL) (3- Hydroxy-phenyl)-carbamic acid, ter-butyl ester (S. J. Gould, R. L. Eisenberg, J. Org. Chem. 56 (23), 1991, 6666) and 1.54 g (4. 763 MMOL) cesium carbonate and stirred for 5 H at room temperature. The reaction mixture is poured onto ice and extracted several times with ethyl acetate. The combined organic phases are washed with water, dried over NA2SO4, filtered and evaporated. Yield : 1.58 g (93 %) brown oil |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | With sodium carbonate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene;tris-(dibenzylideneacetone)dipalladium(0); In water; toluene; at 100℃; for 3h; | To compound 12.1 (0.16 g, 0.91 mmol, 1.0 equiv), isoxazol-3-ylamine (92 mg, 1.1 mmol, 1.2 equiv), tris(dibenzylideneacetone)-dipalladium (21 mg, 0.023 mmol, 0.025 equiv), xantphos (39 mg, 0.068 mmol, 0.075 equiv), and Na2CO3 (133 mg, 1.4 mmol, 1.4 equiv) in toluene (3 mL) was added H2O (16 μL, 0.91 mmol, 1.0 equiv). The reaction mixture was heated to 100 C. and stirred for 3 hr, whereupon it was cooled to RT. The mixture was filtered through Celite and adsorbed onto SiO2 gel. Purification by flash column chromatography (50-75-100% EtOAc/hexanes) afforded 12.2 (0.79 mg, 40%). LCMS: m/z: 221 [M+1]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With hydrogenchloride; In water; isopropyl alcohol; at 95℃; for 0.25h;microwave irradiation; | To a solution of methyl β-chloropyrimidine^-carboxylate (100 mg, 0.58 mmol) in 2-propanol (1 mL) was added aniline (53 μL, 0.58 mmol), followed by 32% HClaq (100 μL). The mixture was heated with stirring, under microwave activation, at 950C for 15 minutes, and the resulting precipitate filtered off and washed with diethyl ether to give 115 mg (86%) of the title compound. 1H NMR (d6-DMSO): 10.26 (IH, s), 8.75 (IH, s), 7.70 (2H, d, J = 7.5 Hz), 7.36-7.45 (3H, m), 7.11 (IH, t, J = 7.5 Hz), 3.90 (3H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | With hydrogenchloride; In water; isopropyl alcohol; at 95℃; for 0.25h;microwave irradiation; | A solution of methyl -chloropyrimidine^-carboxylate (0.15 g, 0.87 mmol), 4- aminophenol (0.095 g, 0.87 mmol) and concentrated hydrochloric acid (0.15 mL) in 2- propanol (1.5 mL) was heated at 95C for 15 minutes under microwave activation, after 30 seconds pre-stirring. The reaction mixture was cooled to room temperature, filtered and the filter cake washed with diethyl ether to give 106 mg (50%) of the title compound. 1H NMR (dβ-DMSO): 10.52 (IH, br), 8.69 (IH, s), 7.26-7.48 (3H, m), 6.80 (2H, d, J = 8.8Hz), 3.90 (3H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; palladium bis[bis(diphenylphosphino)ferrocene] dichloride; In N,N-dimethyl-formamide; at 60℃; for 16h;Inert atmosphere; | Tripotassium phosphate (1.4eq) was added in one portion to a stirred solution of, 7-chloro-5-(4,4,5,5-tetramethyl- [l,3,2]dioxaborolan-2-yl)-benzofuran (leq) and <strong>[6627-22-1]methyl 6-chloropyrimidine-4-carboxylate</strong> (2eq) in DMF (4vol). The mixture was degassed with nitrogen for 5 minutes, after which time Pd(dppf)2C12 (0.2eq) was added in one portion, the mixture was then heated to 60oC and stirred at this temperature for 16 hours under a nitrogen atmosphere. After this time the reaction mixture was cooled to room temperature and partitioned between ethyl acetate (20vol) and water (lOvol). The organic layer was separated, washed sequentially with water (lOvol) then brine (lOvol) before being dried (MgS04), filtered and concentrated. The resulting residue was purified purified using a Biotage Isolera (50g silica column eluting with 100% heptane to 20% ethyl acetate / 50% heptane) to afford the desired compound as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With potassium phosphate; palladium bis[bis(diphenylphosphino)ferrocene] dichloride; In N,N-dimethyl-formamide; at 60℃; for 16h;Inert atmosphere; | Tripotassium phosphate (1.03g,4.8mmol) was added in one portion to a stirred solution of [2-chloro-4-(tetramethyl- 1,3,2- dioxaborolan-2-yl)phenyl](cyclopropyl)methanol (l .Og, 3.2mmol) and ethyl 6- chloropyrimidine-4-carboxylate (0.73g, 3.89mmol) in DMF (20mL). The mixture was degassed with nitrogen for 5 minutes, after which time Pd(dppf)2C12 (0.13g, 0.16mmol) was added in one portion, the mixture was then heated to 60oC and stirred at this temperature for 16 hours under a nitrogen atmosphere. After this time the reaction mixture was cooled to room temperature and partitioned between ethyl acetate (lOOmL) and water (50mL). The organic layer was separated, washed sequentially with water (50mL) then brine (50mL) before being dried (MgS04), filtered and concentrated. The resulting red gum was purified by flash column chromatography (elution: 40%> EtOAc, 60%) Heptane) to give the desired compound (0.74g, 65%> yield) as a colourless oil. ?? (500 MHz, DMSO) 9.42 (d, J=1.10 Hz, 1 H) 8.57 (d, J=1.10 Hz, 1 H) 8.22 - 8.36 (m, 2 H) 7.79 (d, J=8.20 Hz, 1 H) 5.52 (br. s., 1 H) 4.72 (d, J=5.99 Hz, 1 H) 4.43 (q, J=7.09 Hz, 2 H) 1.38 (t, J=7.09 Hz, 3 H) 1.15 - 1.22 (m, 1 H) 0.29 - 0.53 (m, 4 H). Tr = 2.27 min m/z (ES+) (M+H+) 321. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.1 g | To a degassed stirred solution of ethyl 6-chloropyrimidine-4-carboxylate (0.17 g, 0.9 mmol) and 2-chloro-4- (tetramethyl-l,3,2-dioxaborolan-2-yl)benzaldehyde (0.22 g, 0.81 mmol) in dioxane (2.5 mL) was added 2M K2C03 (1.25 mL). Pd(PPh3)4 (57 mg, 0.05 mmol) was then added and the reaction mixture was further degassed before heating to 90C under an atmosphere of nitrogen gas for 2 hours. After this time, the reaction mixture was cooled to room temperature and concentrated. Water (5 mL) was then added and the solid filtered, washed with water (2 mL), acetone (3 x 2 mL) and dried under vacuum. The solid was suspended in a mixture of EtOAc (30 mL) and IN HC1 (10 mL) and then heated to achieve partial solution. The cooled two-phase system was then sonicated to achieve full dissolution. The aqueous layer was re-extracted with EtOAc (10 mL); the combined organics were washed with brine (5 mL), dried (MgS04), filtered and concentrated to give the desired compound (0.1 g, 42%> yield (at) 85%> purity) as a beige solid. Tr = 1.58 min m/z (ES+) (M+H+) 263/265. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19% | To a solution of 5-iodo-7-isopropyl-7H-pyrrolo[2,3-d]pyrimidine (Preparation 79, 2 g, 7.0 mmol) in THF (35 ml_) was added 'PrMgCI (4.18 ml_, 8.36 mmol, 2 M solution in diethyl ether) at 0C. The reaction was stirred at this temperature for 1 hour before the addition of a solution of <strong>[6627-22-1]methyl 6-chloropyrimidine-4-carboxylate</strong> (1 .51 g, 8.75 mmol) in THF (5 ml_). The reaction was warmed to room temperature and stirred for 18 hours. The reaction was quenched by the addition of saturated aqueous ammonium chloride solution and extracted into DCM thrice. The organic layers were combined, washed with brine and concentrated in vacuo. The residue was purified using silica gel column chromatography eluting with 10-60% EtOAc in heptane to afford a yellow solid that was triturated with heptane to afford the title compound as a white solid (436 mg, 19%). 1H NMR (400 MHz, CDCl3): δ ppm 1.66 (d, 6H), 5.20 (m, 1 H), 8.16 (d, 1 H), 9.02 (s, 1 H), 9.13 (s, 1 H), 9.20 (d, 1 H), 9.72 (s, 1 H). LCMS Rt = 1 .23 minutes MS m/z 302 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
520 mg | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium carbonate; In 1,4-dioxane; water; at 100℃; for 2h;Inert atmosphere; | Methyl 6-(4-(trifluoromethyl)cyclohex- 1-enyl)pyrimidine-4-carboxylate. A mixture of 4,4,5,5- tetramethyl-2-[4-(trifluoromethyl)cyclohex- 1-en-i -yl] -1,3 ,2-dioxaborolane (2.00 g, 7.24 mmol, 1.00 equiv), methyl 6-chloropyrimidine-4-carboxylat (1.25 g, 7.27 mmol, 1.00 equiv), Pd(dppf)C12.CH2C12 (560 mg, 0.10 equiv), K2C03 (3.1 g, 3.00 equiv), water (4 mL) in i,4-dioxane (20 mL) was stuffed under nitrogen for 2 h at 100C and then allowed to cool to room temperature. The mixture was diluted with H20 (120 mL) and extracted with ethyl acetate (3x50 mL). The organic extracts were dried over anhydrous sodium sulfate and concentrated under reduced pressure. The residue was purified by flash chromatography on silica gel, eluting with ethyl acetate/petroleum ether (1:3) to afford the title compound (520 mg) as a yellow solid. MS-ESI: [M+H] 287. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34% | Tetrakis-(triphenylphosphine)palladium(0) (0.40 g, 5 mol %) was added to a solution of <strong>[6627-22-1]methyl 6-chloropyrimidine-4-carboxylate</strong> (1.24 g) in DME (35 mL) and the solution left to stir at room temperature (20 min.). K2CO3 (1.11 g, 1.2 eq.), water (10 mL) and 2,4,6-trivinylcyclotriboroxane-pyridine complex (1.93 g, 1.2 eq.) were then added to the solution and the resultant mixture heated at reflux (24 hrs). The mixture was then cooled to room temperature and extracted with diethyl ether (200 mL) and the extract washed with water (30 mL). The diethyl ether extract was dried over MgSO4 and then diluted with hexane (200 mL). The solution was filtered through aluminium oxide (6 g) and the eluent concentrated in vacuo to give a yellow oil. The oil was then subjected to silica gel chromatography (10-100% EtOAc/Pet ether) followed by reverse phase (C18) chromatography (40% MeCN/water) to yield methyl 6-vinylpyrimidine-4-carboxylate as a white solid (0.40 g, 34% yield). 1H NMR, 270 MHz (CDCl3): 9.29 (d, 1H, H-2, J=1.1 Hz), 7.99 (d, 1H, H-5, J=1.1 Hz), dd, 1H, H-A, J=10.4 and 17.3 Hz), 6.61 (dd, 1H, H-C, J=1.0 and 17.3 Hz), 5.81 (dd, 1H, H-B, J=1.0 and 10.4 Hz), 4.02 (s, 3H, -CH3). 13C NMR, 67.5 MHz (CDCl3): 164.79 (2C), 159.22 (2C), 134.71, 124.92, 117.71, 53.52. ESI-MS Expected for molecular ion C8H8N2O2=164.0586. Found M+H=165.0664. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
300 mg | With triethylamine; In dimethyl sulfoxide; at 20℃; for 5h; | A mixture of <strong>[6627-22-1]methyl 6-chloropyrimidine-4-carboxylate</strong> (200 mg, 1.16 mmol, 1.00 equiv), 3- (trifluoromethoxy)azetidine hydrochloride (300 mg, 1.69 mmol, 1.50 equiv), DMSO (6 mL), and TEA (350 mg, 3.46 mmol, 3.00 equiv) was stirred for 5 h at room temperature. The resulting solution was diluted with ethyl acetate, washed with brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. This resulted in the title compound (300 mg, 95%) as a brown solid.LCMS [M+H] 278. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76 g | With trichlorophosphate; In acetonitrile; at 80℃; | [0778] Into a 2000-mL 4-necked round-bottom flask was placed methyl 6-hydroxypyrimidine-4- carboxylate (115 g, 746.16 mmol, 1.00 equiv), CH3CN (1200 mL), and POC13 (340 g, 2.22 mol, 3.00 equiv). The resulting solution was stirred at 80C overnight, cooled to room temperature, concentrated under vacuum, diluted with 1000 mL of EA, and quenched with 1000 mL of water/ice. The resulting solution was extracted with 3x500 mL of ethyl acetate. The combined organic layers were washed with lx 1000 mL of water and lx 1000 mL of brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was applied onto a silica gel colunm eluted with ethyl acetate/petroleum ether (1:4) to afford 76 g (59%) of methyl 6-chloropyrimidine-4-carboxylate as a white solid. LCMS [M+H] 173. |
76 g | With trichlorophosphate; In acetonitrile; at 80℃; | Into a 2000-mL 4-necked round-bottom flask was placed methyl 6-hydroxypyrimidine-4- carboxylate (1 15 g, 746.16 mmol, 1.00 equiv), CH3CN (1200 mL), and POCl3 (340 g, 2.22 mol, 3.00 equiv). The resulting solution was stirred at 80C overnight, cooled to room temperature, concentrated under vacuum, diluted with 1000 mL of EA, and quenched with 1000 mL of water/ice. The resulting solution was extracted with 3x500 mL of ethyl acetate. The combined organic layers were washed with 1x1000 mL of water and 1x1000 mL of brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was applied onto a silica gel column eluted with ethyl acetate/petroleum ether (1 :4) to afford 76 g (59%) of methyl 6-chloropyrimidine-4-carboxylate as a white solid. LCMS [M+H]+ 173. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With sodium tetrahydroborate; ethanol; In tetrahydrofuran; at 0℃; for 3h; | [0780] Into a 3000-mL 4-necked round-bottom flask was placed methyl 6-chloropyrimidine-4- carboxylate (80 g, 463.58 mmol, 1.00 equiv), tetrahydrofuran (1600 mL), and ethanol (160 mL) followed by the addition of NaBH4 (48 g, 1.27 mol, 3.00 equiv) in several batches at 0C. The resulting solution was stirred at 0C for 3 h, quenched by the addition of 1500 mL of water/ice, and extracted with 3x800 mL of ethyl acetate. The combined organic layers were washed with 1x800of brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was applied onto a silica gel colunm eluted with ethyl acetate/petroleum ether (1:2) to afford 40 g (60%) of (6-chloropyrimidin-4-yl)methanol as a yellow solid. LCMS [M+H] 145. |
60% | With sodium tetrahydroborate; ethanol; In tetrahydrofuran; at 0℃; for 3h; | Into a 3000-mL 4-necked round-bottom flask was placed methyl 6-chloropyrimidine-4- carboxylate (80 g, 463.58 mmol, 1.00 equiv), tetrahydrofuran (1600 mL), and ethanol (160 mL), followed by the addition of NaBH4 (48 g, 1.27 mol, 3.00 equiv) in several batches at 0C. The resulting solution was stirred at 0C for 3 h, quenched by the addition of 1500 mL of water/ice, and extracted with 3x800 mL of ethyl acetate. The combined organic layers were washed with 1x800 mL of brine, dried over anhydrous sodium sulfate, and concentrated under vacuum. The residue was applied onto a silica gel column eluted with ethyl acetate/petroleum ether (1 :2) to afford 40 g (60%) of (6-chloropyrimidin-4-yl)methanol as a yellow solid. LCMS [M+H]+ 145 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | Methyl magnesiumbromide (12 ml, 1.4 M in THE / toluene 1:3) was treated with 5.5 mL THE and cooled down to -78CC (ethanol / dry ice). <strong>[6627-22-1]methyl 6-chloropyrimidine-4-carboxylate</strong> (1.00 g), suspended in 8.5 mL THE, was added. The reaction mixture was stirred at this temperature for 2 hours. The reaction mixture was allowed to reach room temperature over night. The reactionmixture was poured into HCI (lmol/L) and stirred for 15 minutes. Then the pH was adjusted to7 by addition of saturated aqueous sodium bicarbonate solution. The aqueous layer was extracted three times with ethyl acetate, the combined organic layers were washed with water and brine, filtered through a silicone coated filter and concentrated under reduced pressure. The crude product was purified by flash chromatography.Yield: 180 mg of the 90% pure target compound.1H-NMR (400 MHz, DMSO-d6) O [ppm] = 1.42 (s, 6H), 5.61 (s, IH), 7.77 (d, 1H), 8.98 (d, 1H). |
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