Structure of 1175298-09-5
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1175298-09-5 |
Formula : | C17H30BNO4 |
M.W : | 323.24 |
SMILES Code : | O=C(OC(C)(C)C)NC1CC(B2OC(C)(C)C(C)(C)O2)=CCC1 |
MDL No. : | MFCD12032213 |
InChI Key : | MFPBSOYHSNYOKC-UHFFFAOYSA-N |
Pubchem ID : | 57812318 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 23 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.82 |
Num. rotatable bonds | 5 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 92.7 |
TPSA ? Topological Polar Surface Area: Calculated from |
56.79 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.04 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.62 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.78 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.51 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.99 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.43 |
Solubility | 0.12 mg/ml ; 0.000372 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.9 |
Solubility | 0.0408 mg/ml ; 0.000126 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.6 |
Solubility | 0.0821 mg/ml ; 0.000254 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.11 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
4.55 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,4-dioxane; water; at 100℃; for 14h; | [0302] 1,4-Dioxane (20 mL), a 2 M aqueous solution of sodium carbonate (6 mL) and Pd(PPh3)4 (318 mg) were addedto 4-chloro-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde (1.00 g) and the compound of Reference Example 1(2a) (1.96 g),and the temperature of the obtained mixture was then increased to 100C, followed by stirring for 14 hours. Thereafter,water was added to the reaction mixture for dilution, and the obtained mixture was then extracted with chloroform. Thegathered organic layer was washed with a saturated saline, dried over anhydrous sodium sulfate, and then concentratedunder a reduced pressure. The obtained residue was purified by silica gel chromatography (chloroform : methanol) toobtain a product of interest (1.70 g, yield: 91%).ESI-MS m/z 342(MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,4-dioxane; water; at 90℃; for 14h;Inert atmosphere; | [0353] 1,4-Dioxane (15 mL) and a 2 M aqueous solution of sodium carbonate (4.5 mL) were added to the Compound48(1) (1.4 g), the compound of Reference Example 1(2a) (2.19 g) and Pd(PPh3)4 (520 mg). Under a nitrogen atmosphere,the mixture was stirred at 90C for 14 hours. Thereafter, water was added to the reaction mixture, and the obtainedmixture was then extracted with ethyl acetate. The gathered organic layer was washed with a saturated saline, driedover anhydrous sodium sulfate, and then concentrated under a reduced pressure. The obtained residue was purifiedby silica gel chromatography (hexane : ethyl acetate) to obtain a product of interest (1.78 g, yield: 84%).1H NMR(CDCl3) delta: 10.06 (s, 1H), 8.35 (d, J=4.8 Hz, 1H), 8.09 (s, 1H), 7.03 (d, J=4.8 Hz, 1H), 5.81 (s, 1H), 5.74 (s, 2H),5.37 (br. s., 1H), 4.10 - 4.02 (m, 1H), 3.61 (dd, J=7.7, 8.8 Hz, 2H), 2.82 - 2.65 (m, 1H), 2.47 - 2.21 (m, 3H), 1.98 - 1.76(m, 2H), 1.47 (s, 9H), 0.98 - 0.89 (m, 2H), -0.03 (s, 6H)ESI-MS m/z 472(MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate; In N,N-dimethyl-formamide; at 80℃; for 14h;Inert atmosphere; | [0249] DMF (90 mL) was added to the compound of Reference Example 1(1a) (9.25 g), 4,4,4?,4?,5,5,5?,5?-octamethyl-2,2?-bi(1,3,2-dioxaborolane) (10.2 g) and potassium acetate (3.95 g), followed by nitrogen substitution. Thereafter,PdCl2(dppf)CH2Cl2 (980 mg) was added to the resultant, and the obtained mixture was then stirred at 80C for 14 hours.Thereafter, the reaction mixture was cooled to a room temperature, and ethyl acetate and water were then added to themixture. Thereafter, thus obtained mixture was filtered through Celite. The filtrate was extracted with ethyl acetate, andthereafter, the gathered organic layer was washed with water and then with a saturated saline. The resultant was driedover anhydrous sodium sulfate, and then concentrated under a reduced pressure. The obtained residue was purifiedby silica gel chromatography (hexane : ethyl acetate) to obtain a product of interest (6.51 g, yield: 75%).1H NMR(CDCl3) delta: 6.56 - 6.51 (m, 1H), 4.58 - 4.41 (m, 1H), 3.80 - 3.62 (m, 1H),2.58 - 2.41 (m, 1H), 2.31 - 2.13 (m, 2H),1.98 - 1.77 (m, 2H), 1.54 - 1.47 (m, 1H), 1.44 (s, 9H), 1.25 (s, 12H)ESI-MS m/z 324 (MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | [0258] To 4-bromo-1H-pyrrolo[2,3-b]pyridine (2.00 g), the compound of Reference Example 1(2a) (4.60 g) and tripotassiumphosphate (5.41 g), 1,4-dioxane (20 mL) and water (3.3 mL) were added, followed by nitrogen substitution, andPdCl2(dppf)CH2Cl2 (746 mg) was then added to the reaction mixture. Thus obtained mixture was stirred at 100C for 5hours. Thereafter, the reaction mixture was cooled to a room temperature, and ethyl acetate and water were then addedto the mixture. Thereafter, thus obtained mixture was filtered through Celite. The filtrate was then extracted with ethylacetate, and the gathered organic layer was then washed with water and then with a saturated saline. The resultant wasdried over anhydrous sodium sulfate, and then concentrated under a reduced pressure. The obtained residue waspurified by silica gel chromatography (chloroform : methanol) to obtain a corresponding coupling product. The obtainedcoupling product was subjected to the subsequent reaction without further purification.[0259] DMF (30 mL) was added to the obtained coupling product, and the obtained mixture was then cooled to 0C.Subsequently, N-iodosuccinimide (2.52 g) was added to the mixture, and the obtained mixture was then stirred at 0Cfor 30 minutes. Thereafter, a 0.5 M aqueous solution of sodium hydrogen sulfite was added to the reaction mixture, andthe obtained mixture was then extracted with ethyl acetate. The gathered organic layer was washed with water and thenwith a saturated saline. The resultant was dried over anhydrous sodium sulfate, and then concentrated under a reducedpressure. The obtained residue was purified by silica gel chromatography (chloroform : methanol) to obtain a correspondingiodine product. The obtained iodine product was subjected to the subsequent reaction without further purification.[0260] DMF (30 mL) was added to the obtained iodine product, and the obtained mixture was then cooled to 0C.Thereafter, 60% sodium hydride (1.02 g), and then, para-toluenesulfonyl chloride (2.33 g) were added to the reactionmixture, and the obtained mixture was then stirred at 0C for 30 minutes. Thereafter, ice water was added to the reactionmixture, and the water layer was then extracted with ethyl acetate. The gathered organic layer was washed with waterand then with a saturated saline. The resultant was dried over anhydrous sodium sulfate, and then concentrated undera reduced pressure. The obtained residue was purified by silica gel chromatography (hexane : ethyl acetate) to obtaina product of interest (3.49 g, yield: 58%).1H NMR (CDCl3) delta: 8.35 (d, J=4.9 Hz, 1H), 8.10 (d, J=8.5 Hz, 2H), 7.89 (s, 1H), 7.30 (d, J=8.5 Hz, 2H), 6.94 (d, J=4.9Hz, 1H), 5.72 - 5.67 (m, 1H), 4.75 - 4.59(m, 1H), 4.11 - 3.97 (m, 1H), 2.70 - 2.60 (m, 1H), 2.40 - 2.32 (m, 2H), 2.39 (s,3H), 2.22 - 2.09 (m, 1H), 2.04 - 1.94 (m, 1H), 1.75 - 1.62 (m, 1H), 1.44 (s, 9H)ESI-MS m/z 594(MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,4-dioxane; at 100℃; for 10h;Inert atmosphere; | [0347] 1,4-Dioxane (44 mL) and a 2 M aqueous solution of sodium carbonate (6.57 mL) were added to the Compound47(1) (2.20 g), the compound of Reference Example 1(2a) (2.34 g) and Pd(PPh3)4 (1.14 mg), followed by nitrogensubstitution. Thereafter, the reaction mixture was stirred at 100C for 10 hours. Thereafter, water was added to thereaction mixture, and the obtained mixture was then extracted with ethyl acetate. The gathered organic layer was washedwith a saturated saline, dried over anhydrous sodium sulfate, and then concentrated under a reduced pressure. Theobtained residue was purified by silica gel chromatography (hexane: ethyl acetate) to obtain a product of interest (2.05g, yield: 63%).ESI-MS m/z 496(MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate; In N,N-dimethyl-formamide; at 80℃; for 14h;Inert atmosphere; | DMF (90 mL) was added to the compound (9.25 g) of Reference Example 1(1a), 4, 4, 4?, 4?, 5, 5, 5?, 5?-octamethyl-2,2?-bi(1,3,2-dioxaborolane) (10.2 g) and potassium acetate (3.95 g), followed by nitrogen substitution. Thereafter,PdCl2(dppf)CH2Cl2 (980.mg) was added to the resultant, and the obtained mixture was then stirred at 80C for 14 hours.Thereafter, the reaction mixture was cooled to a room temperature, and ethyl acetate and water were then added to themixture. Thereafter, the thus obtained mixture was filtered through Celite. The filtrate was extracted with ethyl acetate,and thereafter, the gathered organic layer was washed with water and then with a saturated saline. The resultant wasdried over anhydrous sodium sulfate, and was then concentrated under a reduced pressure. The obtained residue waspurified by silica gel chromatography (hexane : ethyl acetate) to obtain a product of interest (6.51 g, yield: 75%).1H NMR(CDCl3) delta: 6.56 - 6.51 (m, 1H), 4.58 - 4.41 (m, 1H), 3.80 - 3.62 (m, 1H),2.58 - 2.41 (m, 1H), 2.31 - 2.13 (m, 2H),1.98 - 1.77 (m, 2H), 1.54 - 1.47 (m, 1H), 1.44 (s, 9H), 1.25 (s, 12H)ESI-MS m/z 324(MH+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In 1,4-dioxane; water; at 100℃; for 14h;Inert atmosphere; | To 4-chloro-7H-pyrrolo[2,3-d]pyrimidin (2.97 g), the compound (9.39 g) of Reference Example 1(2a) and tripotassiumphosphate (10.2 g), 1,4-dioxane (66 mL) and water (11 mL) were added, followed by nitrogen substitution, andPdCl2(dppf)CH2Cl2 (1.41 g) was then added to the reaction mixture. The thus obtained mixture was stirred at 100C for14 hours. Thereafter, the reaction mixture was cooled to a room temperature, and ethyl acetate and water were thenadded to the mixture. Thereafter, the thus obtained mixture was filtered through Celite. The filtrate was then extractedwith ethyl acetate, and the gathered organic layer was then washed with water and then with a saturated saline. Theresultant was dried over anhydrous sodium sulfate, and was then concentrated under a reduced pressure. The obtainedresidue was purified by silica gel chromatography (chloroform : methanol) to obtain tert-butyl (3-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)cyclohex-3-en-1-yl)carbamate. The above obtained compound was used in the subsequent reaction withoutfurther purification. |
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