Structure of 885693-20-9
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CAS No. : | 885693-20-9 |
Formula : | C16H28BNO4 |
M.W : | 309.21 |
SMILES Code : | O=C(N1CCC=C(B2OC(C)(C)C(C)(C)O2)C1)OC(C)(C)C |
MDL No. : | MFCD10697911 |
InChI Key : | KEEIJBAOTMNSEN-UHFFFAOYSA-N |
Pubchem ID : | 49835909 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 22 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.81 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 91.9 |
TPSA ? Topological Polar Surface Area: Calculated from |
48.0 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.34 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.8 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.54 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.18 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.57 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.97 |
Solubility | 0.333 mg/ml ; 0.00108 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.99 |
Solubility | 0.318 mg/ml ; 0.00103 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.84 |
Solubility | 0.448 mg/ml ; 0.00145 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.52 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
4.13 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | With 1,1'-bis-(diphenylphosphino)ferrocene; potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃; for 16h; | PdCl2dppf (0.16 g, 0.22 mmol), KOAc (2.18 g, 22.2 mmol), 4,4,5,5,4',4',5',5'- octamethyl-[2,2']bi[[l,3,2]dioxaborolanyl] (2.07 g, 8.13 mmol), and dppf (0.12 g, 0.22 mmol) were placed in a round-bottomed flask, and the flask was flushed with Ar. A degassed solution of 5-trifluoromethanesulfonyloxy-3,6-dihydro-2H-pyridine-l-carboxylic acid tert-butyl ester (as prepared in the previous step, 2.45 g, 7.40 mmol) in dioxane (70 mL) was added to the flask and heated to 80 0C for 16 h. The mixture was filtered through a glass-fritted funnel to remove the solid KOAc, and the filtrate was concentrated in vacuo. Silica gel chromatography (5 percent EtOAc in hexanes) afforded the title compound (1.62 g, 71 percent) as a colorless oil. 1H-NMR (CDCl3; 400 MHz): delta 6.69-6.60 (m, IH), 3.98 (br s, 2H), 3.49-3.42 (m, 2H), 2.24-2.16 (m, 2H), 1.47 (s, 9H), 1.27 (s, 12H). LC-MS (ESI, m/z): Calcd. for Ci8H28BNO4 310.2 (M+H), found 311.0. |
71% | With potassium acetate;1,1'-bis-(diphenylphosphino)ferrocene; (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃; for 16h; | PdCl2dppf (0.16 g, 0.22 mmol), KOAc (2.18 g, 22.2 mmol), 4,4,5,5,4',4',5',5'-octamethyl-[2,2']bi[[1,3,2]dioxaborolanyl] (2.07 g, 8.13 mmol), and dppf(0.12 g, 0.22 mmol) were placed in a round-bottomed flask, and the flask was flushed with Ar. A degassed solution of 5-trifluoromethanesulfonyloxy-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester (as prepared in the previous step, 2.45 g, 7.40 mmol) in dioxane (70 mL) was added to the flask and heated to 80° C. for 16 h. The mixture was filtered through a glass-fritted funnel to remove the solid KOAc, and the filtrate was concentrated in vacuo. Silica gel chromatography (5percent EtOAc in hexanes) afforded the title compound (1.62 g, 71percent) as a colorless oil. 1H-NMR (CDCl3; 400 MHz): delta 6.69-6.60 (m, 1H), 3.98 (br s, 2H), 3.49-3.42 (m, 2H), 2.24-2.16 (m, 2H), 1.47 (s, 12H). LC-MS (ESI, m/z): Calcd. for C18H28BNO4 310.2 (M+H), found 311.0. |
71% | With potassium acetate;1,1'-bis-(diphenylphosphino)ferrocene; (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃; for 16h; | b) 5-(4,4,5,5-Tetramethyl-[1,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester PdCl2dppf (0.16 g, 0.22 mmol), KOAc (2.18 g, 22.2 mmol), 4,4,5,5,4',4',5',5'-octamethyl-[2,2']bi[[1,3,2]dioxaborolanyl] (2.07 g, 8.13 mmol), and dppf (0.12 g, 0.22 mmol) were placed in a round-bottomed flask, and the flask was flushed with Ar. A degassed solution of 5-trifluoromethanesulfonyloxy-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester (as prepared in the previous step, 2.45 g, 7.40 mmol) in dioxane (70 mL) was added to the flask and heated to 80° C. for 16 h. The mixture was filtered through a glass-fritted funnel to remove the solid KOAc, and the filtrate was concentrated in vacuo. Silica gel chromatography (5percent EtOAc in hexanes) afforded the title compound (1.62 g, 71percent) as a colorless oil. 1H-NMR (CDCl3; 400 MHz): delta 6.69-6.60 (m, 1H), 3.98 (br s, 2H), 3.49-3.42 (m, 2H), 2.24-2.16 (m, 2H), 1.47 (s, 9H), 1.27 (s, 12H). LC-MS (ESI, m/z): Calcd. for C18H28BNO4 310.2 (M+H). found 311.0. |
71% | With 1,1'-bis(diphenylphosphino)ferrocene; potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃; for 16h; | PdCl2dppf (0.16 g, 0.22 mmol), KOAc (2.18 g, 22.2 mmol), 4,4,5,5,4',4',5',5'- octamethyl-[2,2']bi[[l,3,2]dioxaborolanyl] (2.07 g, 8.13 mmol), and dppf (0.12 g, 0.22 mmol) were placed in a round-bottomed flask, and the flask was flushed with Ar. A degassed solution of 5-trifluoromethanesulfonyloxy-3,6-dihydro-2H-pyridine-l- carboxylic acid tert-butyl ester (as prepared in the previous step, 2.45 g, 7.40 mmol) in dioxane (70 mL) was added to the flask and heated to 80 0C for 16 h. The mixture was filtered through a glass-fritted funnel to remove the solid KOAc, and the filtrate was concentrated in vacuo. Silica gel chromatography (5 percent EtOAc in hexanes) afforded the title compound (1.62 g, 71 percent) as a colorless oil. 1H-NMR (CDCl3; 400 MHz): delta 6.69-6.60 (m, IH), 3.98 (br s, 2H), 3.49-3.42 (m, 2H), 2.24-2.16 (m, 2H), 1.47 (s, 9H), 1.27 (s, 12H). LC-MS (ESI, m/z): Calcd. for C18H28BNO4 310.2 (M+H), found 311.0. |
70% | With 1,1'-bis-(diphenylphosphino)ferrocene; (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In 1,4-dioxane; at 80℃; for 18h;Inert atmosphere; | Step 2 To a degassed solution of 5-trifluoromethanesulfonyloxy-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester (340 mg, 1.0 mmol, 1 eq) in dioxane (10 mL) was added bis-(pinacolato)-diboron (287 mg, 1.1 mmol, 1.1 eq), potassium acetate (302 mg, 3.0 mmol, 3 eq), 1,1'-bis(diphenylphosphino)ferrocene (17 mg, 0.03 mmol, 0.03 eq) and dichloro[1,1'-bis(diphenylphosphino)ferrocene]palladium) (23 mg, 0.03 mmol, 0.03 eq) were added. The mixture was stirred at 80° C. for 18 h. After cooling down, the mixture was filtered and the filtrate was concentrated and purified by flash chromatography using cyclohexane and ethyl acetate (100/0 to 96/4) to afford the corresponding boronic ester (225 mg, 70percent yield). |
64% | With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate; In 1,4-dioxane; at 80℃;Inert atmosphere; | To a solution of tert-butyl 3-(trifluoromethylsulfonyloxy)-5,6-dihydropyridine- l(2H)- carboxylate (503-2) (1.4 g, 4.3 mmol), BPin ( 1.3 g, 5.1 mmol) and KOAc (1.26 g, 12.9 mmol) in dioxane (10 mL) was added Pd(dppf)Cl2.DCM (351 mg, 0.43 mmol). The resulting mixture was purged with N2 X 3 and heated to 80 °C overnight. The solvent was removed in vacuo and the residue was purified by column chromatography (silica gel, 0 to 10percent EA in PE) to give tert-butyl 3-(4,4,5,5-tetramethyl- 1,3,2- dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (503-3) (850 mg, 64percent) as a yellow oil. |
42% | With potassium acetate;1,1'-bis-(diphenylphosphino)ferrocene; [1,1?-bis(diphenylphosphino)ferrocene]dichloropalladium(II)-acetone complex; In 1,4-dioxane; at 80℃; for 12h; | To a high pressure vessel was added 5-trifluoromethanesulfonyloxy-3,6- dihydro-2H-pyridine- l-carboxylic acid tert-butyl ester (1.0 g, 3.0 mmol), dichloro[l ,l '- bis(diphenylphosphino)ferrocene]palladium (II) acetone adduct (0.2 g, 0.3 mmol), Iota , - bis(diphenylphosphino)ferrocene (0.2 g, 0.3 mmol), bis(pinacolato)diboron (0.84 g, 3.3 mmol) and K2OAc (0.89 g, 9.0 mmol) in 1 ,4-dioxane (7 mL, 90 mmol). The reaction was heated for 12 h at 80 °C. After cooling to RT, the mixture was diluted with EtOAc, the organic phase was concentrated in vacuo, and the residue purified by column chromatography to afford the named compound (42percent). .H NMR (CDC13, 400 MHz): delta 6.57 (br. s., 1H), 3.91 (br. s., 2H), 3.39 (t, J = 5.81 Hz, 2H), 2.13 (br. s., 2H), 1.39-1.41 (m, 9H), 1.19 (s, 12H). |
41% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In N,N-dimethyl-formamide; at 85℃; for 4h;Inert atmosphere; | A mixture of tert-butyl 5-(((trifluoromethyl)sulfonyl)oxy)-3,6-dihydropyridine-1(2H)-carboxylate (3.5 g, 14.5 mmol), Pd(dppf)Cl2 (0.38 g, 0.53 mmol), bis(pinacolato)diboron (3.9 g, 15.8 mmol), and KOAc (3.1 g, 31.5 mmol) in anhydrous DMF was degassed and purged with nitrogen three times. The mixture was heated at 85° C. for 4 h. After cooling down to room temperature, the reaction was diluted with ethyl acetate, filtered, and concentrated. The crude residue was purified by silica gel column chromatography to afford tert-butyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydropyridine-1(2H)-carboxylate (1.4 g, 41percent) as a colorless oil. |
With potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃; | To a 25 mL round bottom flask charged with bis(pinacolato)diboron (1.50 g, 6 mmol), potassium acetate (1.5 g, 15 mmol), Pd(dppf)Cl2 (408 mg, 0.5 mmol) and DPPF (277 mg, 0.5 mmol). Compound 195 (1.55 g, 5.0 mmol) in dioxane 20 mL) was added to the above mixture. The mixture was degassed thoroughly and placed under argon. This resulting mixture was then heated at 80° C. for overnight, diluted with EtOAc (40 mL) and filtered through celite. After concentration, the residue was purified with column chromatography (silica gel, Hexane/EtOAc=60/40) to give the product (832 mg) as an oil. HPLC-MS tR=2.41 min (UV254 nm), mass calculated for formula C16H28BNO4, 309.2; observed MH+-t-Bu (LCMS) 254.2(m/z). | |
With potassium acetate; In 1,4-dioxane; | Preparation 5: tert-butyl 5-(3H-pyrroIo[3,2-fJ[l,7]naphthyridin-9-yl)-3,6-dihydro-2H- pyridine-l-carboxylate (36) The compound 36 is prepared according to the procedure described in patent applications WO 2007/146838 and WO 2010/059771 | |
With potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 80℃;Inert atmosphere; | 5-(4,4,5,5-Tetramethyl-1 ,3,2-dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester[370] A mixture of Bis(pinacolato)diboron (0.864 g, 3.40 mmol), (1 ,1'-bis-(diphenyl- phosphino)ferrocene)palladium (0.29 g, 0.39 mmol), potassium acetate (0.642 g, 6.54 mmol) and 5-trifluoromethanesulfonyloxy-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester(0.600 g, 1.81 mmol) in 1 ,4-dioxane (20 ml.) was degassed and refilled with N2 three times.The resulting material was stirred at 80 °C for overnight. The reaction mixture was filtrated through a celite pad, concentrated in vacuo and purified by silica gel (Hexanes: EtOAc = 9:1 , v:v) to afford the desired product. 1H NMR (400 MHz, CDCI3): delta = 1.38 (s, 9 H), 2.01-2.19 (m,2 H), 3.28-3.41 (m, 2 H), 3.89 (d, J = 2.23 Hz, 2 H), 6.55 (br. s., 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | A solution of 5-(4,4,5,5-tetramethyl-[ 1,3, 2]dioxaborolan-2-yl)-3,6-dihydro-2H- pyridine-1-carboxylic acid tert-butyl ester (as prepared in Example 46, step (b), 0.62 g, 2.02 mmol) and l-[4-(4-amino-3-bromo-phenyl)-piperidin-l-yl]-ethanone (as prepared in the previous step, 0.20 g, 0.67 mmol) in toluene:EtOEta (2:1, 9 mL) was treated with 2.0 M aqueous Na2CO3 (2.7 mL, 5.38 mmol) and was degassed with sonication under Ar. The mixture was heated to 80 0C, treated with Pd(PPh3)4 (54 mg, 0.05 mmol), and stirred at 80 °C for 4.5 h. The reaction was cooled to room temperature, diluted with EtOAc, and washed with saturated aqueous NaHCO3. The organic layer was dried over MgSO4 and EPO <DP n="101"/>concentrated in vacuo to afford the title compound (0.25 g, 93 percent) as an off-white solid. LC-MS (ESI, m/z): Calcd. for C23H33N3O3 422.2 (M+Na), found 422.0. | |
93% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 80℃; for 4.5h; | A solution of <strong>[885693-20-9]5-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester</strong> (as prepared in Example 46, step (b), 0.62 g, 2.02 mmol) and 1-[4-(4-amino-3-bromo-phenyl)-piperidin-1-yl]-ethanone (as prepared in the previous step, 0.20 g, 0.67 mmol) in toluene:EtOH (2:1, 9 mL) was treated with 2.0 M aqueous Na2CO3 (2.7 mL, 5.38 mmol) and was degassed with sonication under Ar. The mixture was heated to 80° C., treated with Pd(PPh3)4 (54 mg, 0.05 mmol), and stirred at 80° C. for 4.5 h. The reaction was cooled to room temperature, diluted with EtOAc, and washed with saturated aqueous NaHCO3. The organic layer was dried over MgSO4 and concentrated in vacuo to afford the title compound (0.25 g, 93percent) as an off-white solid. LC-MS (ESI, m/z): Calcd. for C23H33N3O3 422.2 (M+Na), found 422.0. |
93% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 80℃; for 4.5h; | f) 5-[5-(1-Acetyl-piperidin-4-yl)-2-amino-phenyl]-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester A solution of <strong>[885693-20-9]5-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester</strong> (as prepared in Example 46, step (b), 0.62 g, 2.02 mmol) and 1-[4-(4-amino-3-bromo-phenyl)-piperidin-1-yl]-ethanone (as prepared in the previous step, 0.20 g, 0.67 mmol) in toluene:EtOH (2:1, 9 mL) was treated with 2.0 M aqueous Na2CO3 (2.7 mL, 5.38 mmol) and was degassed with sonication under Ar. The mixture was heated to 80° C., treated with Pd(PPh3)4 (54 mg, 0.05 mmol), and stirred at 80° C. for 4.5 h. The reaction was cooled to room temperature, diluted with EtOAc, and washed with saturated aqueous NaHCO3. The organic layer was dried over MgSO4 and concentrated in vacuo to afford the title compound (0.25 g, 93percent) as an off-white solid. LC-MS (ESI, m/z): Calcd. for C23H33N3O3 422.2 (M+Na). found 422.0. |
93% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 80℃; for 4.5h; | A solution of 5-(4,4,5,5-tetramethyl-[l ,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H- pyridine-1 -carboxylic acid tert-butyl ester (as prepared in Example 46, step (b), 0.62 g, 2.02 mmol) and l-[4-(4-amino-3-bromo-phenyl)-piperidin-l-yl]-ethanone (as prepared in the previous step, 0.20 g, 0.67 mmol) in toluene:EtOH (2:1, 9 mL) was treated with 2.0 M aqueous Na2COs (2.7 mL, 5.38 mmol) and was degassed with sonication under Ar. The mixture was heated to 80 0C, treated with Pd(PPh3)4 (54 mg, 0.05 mmol), and stirred at 80 °C for 4.5 h. The reaction was cooled to room temperature, diluted with EtOAc, and washed with saturated aqueous NaHCO3. The organic layer was dried over MgSO4 and concentrated in vacuo to afford the title compound (0.25 g, 93 percent) as an off-white solid. LC-MS (EST, m/z): Calcd. for C23H33N3O3 422.2 (M+Na), found 422.0. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In N,N-dimethyl-formamide; at 80℃; | To a 25 mL round bottom flask charged with boronate 197 (456 mg, 1.5 mmol), K2CO3 (800 mg, 6 mmol), and Pd(dppf)Cl2 (160 mg, 0.2 mmol) was added a solution of product from example 177(360 mg, 1.5 mmol) in DMF (10 mL). The mixture was degassed thoroughly and placed under argon. This resulting mixture was then heated at 80° C. overnight. The reaction mixture was diluted with EtOAc (40 mL) and filtered through Celite. After concentration, the residue was purified by column chromatography (silica gel, Hexane/EtOAc=60/40) to give the product 198 (258 mg) as an oil. HPLC-MS tR=1.91 min (UV254 nm); mass calculated for formula C17H22N4O2S, 346.1; observed MH+ (LCMS) 347.2 (m/z). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 66: 3-[(S)-1-(2,6-Dichloro-3-fluorophenyl)ethyl]-5-(1 ,2,5,6-tetrahydropyridin- 3-yl)-1H-pyrrolo[2,3-b]pyridine[368] A mixture of 5-(4,4,5,5-Tetramethyl-1 ,3,2-dioxaborolan-2-yl)-3,6-dihydro-2/-/-pyridine-1- carboxylic acid tert-butyl ester (0.0154 g, 0.0498 mmol), ((S)-I -{5-Bromo-3-[(S)-1 -(2,6- dichloro-3-fluorophenyl)ethyl]pyrrolo[2,3-b]pyridine-1-carbonyl}-3-methyl-butyl)-carbamic acid 9/-/-fluoren-9-ylmethyl ester (0.020 g, 0.028 mmol), Pd(PPh3)4 (0.0048 g, 0.0041 mmol) and K2CO3 (0.0172 g, 0.124 mol) in DME (1.2 mL) and H2O (0.3 mL) was stirred at 100 °C under microwave condition for 30 min. The reaction mixture was directly loaded onto Prep TLC (5percent MeOH in DCM) to afford 10 mg crude product. The crude product was dissolved in DCM (2 mL) and treated with 4 M HCl in dioxane for 2 h at rt. The resulting solution was loaded onto a Prep TLC (20x20 cm plate, silica gel 500 muM, 5percent 7 N NH3 in MeOH in DCM) to afford the desired product. 1H-NMR (CD3OD, 400 MHz): delta = 1.86 (d, J = 7.1 Hz, 3 H), 2.30 (m, 2 H), 2.99 (t, J = 5.9 Hz, 2 H), 3.58 (m, 2 H), 5.26 (m, 1 H), 5.97-6.07 (m, 1 H), 7.15-7.24 (m, 2 H), 7.37 (d, J = 1.3 Hz, 1 H), 8.15 (d, J = 2.0 Hz, 1 H). MS (ES+): m/z 390.07 (MH+, 35CI), 392.02(MH+, 37CI), HPLC: tR = 2.50 min (ZQ3, polar_5min). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In 1,2-dimethoxyethane; water; at 80℃; for 12h; | To a high pressure vessel was added 5-(4,4,5,5-tetramethyl-l ,3,2-dioxaborolan-2- yl)-3,6-dihydro-2H-pyridine-l -carboxylic acid tert-bu yX ester (1.0 g, 3.2 mmol), methyl 6- bromopicolinate (0.77 g, 3.6 mmol), tetrakis(triphenylphosphine)palladium(0) (0.4 g, 0.3 mmol), 1 M of sodium carbonate in water (9.7 mL, 9.7 mmol) and DME (10.1 mL, 97.0 mmol). The reaction was heated for 12 h at 80 °C,then cooled to RT and diluted with water and EtOAc. The organic phase was separated, dried (Na2SC>4), filtered and concentrated in vacuo. The crude material was purified by column chromatography (gradient hexane-EtOAc) to afford the named compound (0.71 g, 70percent yield). .H NMR (CDC13, 300 MHz): delta 7.79 (d, J = 7.55 Hz, 1H), 7.72 (t, J = 7.93 Hz, 1H), 7.44 (d, J = 8.31 Hz, 1H), 4.32-4.41 (m, 1H), 3.90-3.96 (s, 3H), 3.55-3.64 (m, 2H), 2.50 (br. s., 2H), 1.84-1.95 (m, 2H), 1.48 (s, 12H). EIMS (m/z): calcd. for Ci7H2204N2 (M-C4H9, +1H) 263, found 263. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A flask with 4.4.4',4',5,5,5'-heptamethyl-2,2'-bi(l,3.2-dioxaborolane) (10.48 g, 43.7 mmol), (dppf)PdCl2 (0.930 g, 1.139 mmol), and potassium acetate (11.18 g, 114 mmol) was flushed with N2 (3 X), then 1,4-dioxane (100 mL) was added followed by a solution of tert-butyl 5-(trifluoromethylsulfonyloxy)-3,4-dihydropyridine-l(2H)-carboxylate and tert-butyl 3- (trifluoromethylsulfonyloxy)-5,6-dihydropyridine-l(2H)-carboxylate (1 : 1 ratio, 12.58 g, 38.0 mmol) in 1,4-dioxane (100 mL). The solution was heated in an 80 °C oil bath for 20 hours. The reaction was quenched with water (100 mL) and the aqueous layer extracted with EtOAc (3 x 100 mL). The combined organic layers were washed with saturated aqueous NaCl (100 mL), dried with magnesium sulfate (MgS04), and concentrated. The residue was purified by silica gel chromatography using ISCO.(TM). (330 g Si02, 0-20percent EtOAc/hexane) to give tert-butyl 3-(4,4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate and tert-butyl 5- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-3,4-dihydropyridine-l(2H)-carboxylate (7.29 g, 23.58 mmol, 62.1 percent yield) (inseperable 2: 1 mixture of olefin regioisomers) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
79.82% | With sodium carbonate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; water; at 90℃;Inert atmosphere; | Step 1: tert-butyl 5-(3H-pyrrolo[3,2-f][l,7]naphthyridin-9-yl)-3,6-dihydro-2H-pyridine- 1-carboxylate (40)To a degassed solution of compound 11 (4 g, 19.70 mmol), compound 36 (7.61 g, 24.63 5 mmol) in dioxane (200 mL) was added aq. Na2C03 (2.5 M, 59.1 1 mmol, 24 mL) and Pd(dppf)Cl2 (1.6 g, 1.97 mmol) under nitrogen atmosphere. It was heated at 90 °C overnight. Water was added to it and extracted with ethyl acetate. Organic layer was dried over sodium sulphate filtered and concentrated under vacuum. Residue obtained was purified by column chromatography to get tert-butyl 5-(3H-pyrrolo [3,2-fJ[l,7]naphthyridin-9-yl)-3,6-dihydro- 10 2H-pyridine-l-carboxylate (5.5 g, 79.82 percent). 1HNMR (400MHz, CDC13): QiD Qbr s, 9H), 2.40-2.54 (m, 2H), 3.40-3.52 (m, 1H), 3.80-3.94 (m, 1H), 4.05-4.29 (m, 1H), 4.46-4.57 (m, 1H), 6.01 (s, 1H), 7.40 (d, J = 4.4 Hz, 2H), 8.89 (d, J = 4.4 Hz, 1H), 9.20 (s, 1H), 9.55 (br s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium phosphate; In 1,4-dioxane; water; at 80℃; for 0.5h;Microwave irradiation; Inert atmosphere; | A mixture of 2-chloro-9-isopropyl-N-(1-methyl-1H-pyrazol-4-yl)-9H-purin-6-amine (600 mg, 2 mmol), as prepared in step 1 of Example 2, <strong>[885693-20-9]tert-butyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-3,6-dihydropyridine-1(2H)-carboxylate</strong> (700 mg, 2.3 mmol, 1.1 mol eq), tripotassium phosphate (1.11 g, 5.1 mmol, 2.5 mol eq), PdCl2(dppf) (75 mg, 0.1 mmol, 0.05 mol eq) in dioxane (10 mL) and water (5 mL) was degassed, stirred and heated at 80° C. (using microwave at normal absorption level) for 30 min. The reaction was then diluted with ethyl acetate (120 mL), washed with brine (20 mL), dried over Na2SO4 and evaporated to give a residue that was purified via flash chromatography with gradients from 50percent ethyl acetate-50percent heptane to 100percent ethyl acetate and then to 10percent ammonia (7 N in methanol)-90percent ethyl acetate to give the title product as a red solid (901 mg, 100percent yield). 1H NMR (400 MHz, DMSO-d6) delta ppm 9.89 (s, 1H) 8.29 (s, 1H) 8.00 (br. s., 1H) 7.79 (br. s., 1H) 7.22 (br. s., 1H) 4.77 (dt, J=13.39, 6.76 Hz, 1H) 4.45 (br. s., 2H) 3.84 (s, 3H) 3.50 (t, J=5.38 Hz, 2H) 2.36 (d, J=3.18 Hz, 2H) 1.57 (d, J=6.72 Hz, 6H) 1.44 (s, 9H). m/z (APCI+) for C22H30N8O2 439.3 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; sodium carbonate; In tetrahydrofuran; methanol; water; at 130℃;Inert atmosphere; Microwave irradiation; | To a 10 itt micr3na babe were added fl-cl cio-[1,4]MaJo[l,5-a]pytidin-S-y1)47-dihytho- 4H-pyra.1o[5,1-c][1,4)Dxa.a-2-ariix (0.576 g, 1981 nuri.ol), ten-butyl 3-(4,4,5,5-tehaxnetlwl- l3,2-dioxthor1an-2-yl)-5,&diliytopine-l(2h)-caiborj1ate (0.858 g, 2.77 mimi, Aithen, ThF (3 niL), MICE (CEO] ni) anl 2 M aqueoas soThim oiboiiate sobatoit (297 niL, 5.94 numl). Th nthrbne was spae1 with nibgen, follcwed by addi±i of 1, 1?- bis(dip1nyIpIosplthcer-p11ad±uni1)diclilode d 11o1om?than conmlex (O.1t2 g, O.l numl). The vial was sealed ani sped with riitrwen agaiit TIE ieacbcn nuebin was hated in niwa at about 120 C fc thc?at 1 h. TIE rac&n nththaie wa filterel t1uoighCelite? washd with ECM and MeCH, concextated urder x±iced wessun. Th zesulthig rsidue wa puiified vu si1ic gel chrmatcnpI ehtiig with 0-1 Cpercent DCMIMeOH to give ten-ba4yl 3 - (Z 7-thftidro4H- p.w.:rdo(21 J-cJfl. 4Jaxath-2-yrno)-fl 2, 4]rro1o(L 5JpwithnCL.y1).5 CdrcyndSi) cavb.ny1e (0.704 g, E55i] percent) as a light biowii solid: LCJMS (Table 1, MetIrd 1) F = 2.19 rtuen;MS m&: 438 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate; In 1,4-dioxane; water; at 70℃; for 16h;Sealed tube; Inert atmosphere; | A deoxygenated mixture of tert-butyl 3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan- 2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (110 mg, 0.356 mmol), 2-chloro-4-iodopyridine (102 mg, 0.427 mmol), 1 , l'-bis(di-tert-butylphosphino)ferrocene palladium dichloride (23.2 mg, 0.036 mmol), and cesium carbonate (232 mg, 0.711 mmol) in dioxane (1.62 mL) and water (0.162 mL) was heated at 70 °C in a sealed vessel for 16 h. The mixture was cooled to room termperature and partitioned between water and ethyl acetate (2x). The combined organic layers were washed with saturated aqueous sodium chloride, dried over sodium sulfate, and concentrated. The residue was purified by silica gel chromatography eluting with a gradient of hexanes:ethyl acetate - 95:5 to 35:65 to give the title compound. MS: mlz = 295.2 [M+l]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; at 20℃; for 1h; | To a solution of tert-butyl 3 -(4,4,5 ,5-tetramethyl- 1,3 ,2-dioxaborolan-2-yl)-5 ,6- dihydropyridine-1(2H)-carboxylate (102 mg, 0.33 mmol) in CH2C12 (2 ml) was added TFA (2 ml, 26.0 mmol) at RT and the resulting solution was stirred at RT for 1 hour. Afterconcentration the residue was lyophilized from acetonitrile/water to give 5-(4,4,5,5-tetramethyl-1,3 ,2-dioxaborolan-2-yl)- 1,2,3 ,6-tetrahydropyridine 2,2,2-trifluoroacetate. LCMS (M+ 1 ):210.13 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; dichloro[1,1?-bis[bis(1,1-dimethylethyl)phosphino]ferrocene-P,P?]palladium; In ethanol; water; at 75℃; for 20h;Glovebox; | General procedure: Into 2 dram vials were added substituted boronic acid or ester (0.1 mmol) andpalladium catalyst (5 mg, 7.6 .imol) and 230 .iL of 1 N degassed aq. K3P04 solution. In a glovebox, 1 mL of solution of (R)-tert-butyl 2-((R)-2-(4-bromo-3-fluorophenyl)-1-(2-(4- methoxybenzyl)-2H-tetrazol-5 -yl)ethyl)-4-methylpentanoate (40 mg, 0.076 mmol) in EtOH was added into each vial. The vials were capped and heated at 75C with stirring for 20 hr (overnight). After the vials were cooled down to room temperature, the solvent was removed in Genevac evaporator. Into each residue was added 600 .iL of H20 and 2 mL of DCM. The organic layers were transferred into 2 dram vials. The organic solvent was removed in Genevac evaporator to afford the crude intermediates. |
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