Structure of 3424-43-9
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CAS No. : | 3424-43-9 |
Formula : | C9H11NO3 |
M.W : | 181.19 |
SMILES Code : | O=C(C(C=C1)=C(C)NC1=O)OCC |
MDL No. : | MFCD01871481 |
InChI Key : | UEZSEPUDNLUVNJ-UHFFFAOYSA-N |
Pubchem ID : | 3299500 |
GHS Pictogram: | ![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H320-H335 |
Precautionary Statements: | P261-P280-P301+P312-P302+P352-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.33 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 48.12 |
TPSA ? Topological Polar Surface Area: Calculated from | 59.16 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from | 1.88 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by | 0.52 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from | 0.86 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from | 0.85 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by | 2.14 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions | 1.25 |
Log S (ESOL):? ESOL: Topological method implemented from | -1.43 |
Solubility | 6.66 mg/ml ; 0.0368 mol/l |
Class? Solubility class: Log S scale | Very soluble |
Log S (Ali)? Ali: Topological method implemented from | -1.33 |
Solubility | 8.41 mg/ml ; 0.0464 mol/l |
Class? Solubility class: Log S scale | Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by | -2.8 |
Solubility | 0.287 mg/ml ; 0.00158 mol/l |
Class? Solubility class: Log S scale | Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg | High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg | Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) | No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) | No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) | No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) | No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) | No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) | No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from | -7.04 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from | 0.0 |
Ghose? Ghose filter: implemented from | None |
Veber? Veber (GSK) filter: implemented from | 0.0 |
Egan? Egan (Pharmacia) filter: implemented from | 0.0 |
Muegge? Muegge (Bayer) filter: implemented from | 1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat | 0.55 |
PAINS? Pan Assay Interference Structures: implemented from | 0.0 alert |
Brenk? Structural Alert: implemented from | 0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from | No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) | 1.87 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With 2,3-dicyano-5,6-dichloro-p-benzoquinone; In 1,4-dioxane; for 5.0h;Heating / reflux; | Ethyl 2-methyl-6-oxo-l,4,5,6-tetrahydropyridine-3-carboxylate (2g, 10.93mmol) and DDQ (5.21g, 22.95mmol) in 1,4-dioxaxne (110ml) were heated under reflux for 5h. The residue obtained after evaporation of solvent under reduced pressure was partitioned between DCM and water and washed with sat. sodium hydrogen carbonate solution. The aqueous layer was extracted with DCM twice. The organics were combined, washed with brine, dried and the solvent was evaporated to give a solid which was purified by chromatography eluting with MeOH:DCM (1 :99 to 4:96). Insoluble material in DCM and MeOH, prior to purification, was filtered off to give pure product. The product obtained after purification was dissolved in DCM and passed through a pre-equilibrated neutral alumina column, eluting with DCM, then 5% MeOH:DCM. Re-evaporation of solvent gave the title compound as a solid which was dried in vac oven overnight at 50C (1.23g, 62%). NMR (400MHz): 1.28 (t, 3H), 2.53 (s, 3H), 4.21 (q, 2H), 6.21 (d, IH), 7.82 (d, IH), 12.00 (s, IH); m/z 182. As an alternative to the above, the reaction mixture may be diluted with DCM and passed through a pre-equilibrated neutral alumina column, eluting with DCM, then MeOH. EPO <DP n="62"/>Chromatography on silica gel, then neutral alumina column eluting with DCM gave the product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With silver carbonate; at 50℃; for 16.0h; | : To a suspension of ethyl2-methyl-6-oxo-1,6-dihydropyridine-3-carboxylate (0.2 g, 1.06 mmol) and Ag2CO3(0.44 g, 1.59 mmol) was added methyl iodide (0.3 mL, 4.24 mmol)and the reaction mixture was heated at 50 C for 16 h. The reaction mixture wascooled to room temperature, filtered and concentrated. The crude residue waspurified by Combiflash with 20% EtOAc in Hexane to afford the title compound asoff-white solid (0.25 g, 75%). 1H NMR (DMSO-d6, 400 MHz) δ1.37 (t, J = 7.2 Hz, 3H), 2.75 (s,3H), 3.96 (s, 3H), 4.33 (q, J = 7.2Hz, 2H), 6.57 (d, J = 8.4 Hz, 1H),8.11 (d, J = 8.8 Hz, 1H); MS (ESI) m/z196.1 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
14% | With (bis-(2-methoxyethyl)amino)sulfur trufluoride; In acetonitrile;Heating / reflux; | Example 1; 25 Ethyl 6-(4-[(benzylsulfoϖyl)amino]carbonyl}piperidin-l-yl)-5-chloro-2- (difluoromethyl)nicotinate(a) Ethyl 2-(difluoromethyl)-6-oxo-l,6-dihydropyridine-3-carboxylate30 Ethyl 2-methyl-6-oxo-l,6-dihydropyridine-3-carboxylate (2.0 g, 11.04 mmol) ( Sobczak, A et al, Synth. Comrnun, VoL 35, No. 23, 2005, pρ2993-3001) was added to a solution of 2- methoxy-N-(2-merhoxyethyl)-N-(trifiuoro-λ4-sulfanyl)ethanamine (7.82 g, 22.08 mmol) in <n="86"/>85CH3CN under an atmosphere of nitrogen. The reaction was refluxed over night after which further 2-methoxy-N-(2-methoxyethyl)-N-(trifluoro-λ4-sulfanyl)ethanamine (2.73 g, 7.7 mmol) was added and the stirring was continued until all starting material was consumed. The reaction was diluted with diethyl ether, filtered to remove black solids, washed with5 water and NaHCO3 (aq,sat). Both phases were filtered again to remove more of black solids. The aqueous phase was extracted with diethyl ether (2 times) and the combined organic phase was dried (MgSO4), filtered and concentrated and slurried in diethyl ether to remove yellow impurities. Drying of the remaining white solid gave ethyl 2- (difluoromethyl)-6-oxo-l,6-dihydropyridine-3-carboxylate. Yield: 370 mg (14 %). io 1H NMR (400 MHz, CDCi) δ 1.38 (3H, t, J= 7.2 Hz), 4.36 (2H, q, J= 7.2 Hz), 6.69 (IH, d, J= 10 Hz), 7.56 (IH, t, J= 54 Hz), 7.99 (IH, d, J= 10 Hz).; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94.7% | As shown in step 8-i of Scheme 8, according to the procedure of International Patent Application Publication No. WO2006/095159, a mixture of ethyl 2-methyl-6-oxo- 1 ,6- dihydropyridine-3-carboxylate (5.92 g, 32.6 mmol) in phosphorous oxychloride (45 mL) was heated at 90C for 1 hour. After cooling, the reaction mixture was concentrated under reduced pressure and ice water was added to the residue, followed by addition 28% ammonium hydroxide to adjust the pH to 7. The resulting white solid was collected by filtration, washed with ice water, and dried under high vacuum to give ethyl 6-chloro-2- methylnicotinate (Compound 2027, 6.18 g, 94.7% yield): ESMS (M+l) 200.19; 1H NMR (CDCls) δ 8.18 (d, J = 8.2 Hz, 1H), 7.27 (d, J = 8.2 Hz, 1H), 4.40 (q, J = 7.1 Hz, 2H), 2.84 (s, 3H), 1.42 (t, J = 7.4, 3H). | |
81% | With trichlorophosphate;Heating / reflux; | Ethyl 2-methyl-6-oxo-l,6-dihydropyridine-3-carboxylate (Method 2; 2.281g, 12.60mmol) and phosphorus oxychloride (50ml) were heated under reflux overnight. The oil obtained on evaporation of solvent was poured onto ice and solution neutralised with aq NH3. The resulting precipitate was filtered off, washed with water and air-dried, to give the title compound as a solid (2.32g, 81%). NMR (400MHz): 1.33 (t, 3H), 2.70 (s, 3H), 4.33 (q, 2H), 7.49 (d, IH), 8.21 (d, IH); m/z 200-202. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at 20 - 100℃; for 1.5h; | Ethyl 2-methyl-6-oxo-l,6-dihydropyridine-3-carboxylate (2.00 g, 11.0 mmol), (Raileanu D., et. al. Tetrahedron , VoI 30 pp 623-32, 1974) was dissolved in DMF (35 mL) under a nitrogen atmosphere. NCS (1.53g, 11.5 mmol) taken upp in DMF (5.0 mL) at r.t. The reaction mixture was heated at 1000C for Ih. An additional amount of NCS (500mg, 3.8 mmol) was added and the reaction mixture was stirred for 0.5h. The reaction mixture was diluted with DCM were washed with water and brine once each. The aqueous phase was extracted with DCM twice and the combined organic phases were passed through a phase separator and the solvents were removed in vacuo. The crude product was purified by flash chromatography on silica (Biotage horizon)frst EtO Ac/heptane 1:1 followed by EtOAc to give ethyl 5-chloro-2-methyl-6-oxo- l,6-dihydropyridine-3-carboxylate as a yellow solid Yield=1.362g( 52%). 1H NMR (400 MHz, DMSO-d6) 5 1.37 (3H, 1, J= 7.3 Hz), 2.74 (3H, s), 4.32 (2H, q, J= 7.3) Hz, 8.19 (IH, s> |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With N-iodo-succinimide; In acetonitrile; at 95℃; for 5.0h; | N-lodosuccinimide (4Og, 180mmol) was added to a suspension of intermediate (5b), 2-methyl-6-oxo-1 ,6-dihydro-pyridine-3-carboxylic acid ethyl ester (18.1g, lOOmmol) in acetonitrile (40OmL), under a nitrogen atmosphere. The resulting suspension was heated at 950C for 5 hours to give an initial orange solution. An off-white precipitate slowly formed. The resulting suspension was allowed to cool and was poured into water (120OmL) to give an off-white precipitate. The separated by filtration and the <n="51"/>solids washed with water (50OmL) to give an off-white powder. The solids were dried in vacuo (6O0C) to give the product as an off-white powder, 28.3g (92%) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
36% | In N,N-dimethyl-formamide; at 175℃; for 24.0h; | A solution of intermediate (5a), (E)-4-[1-amino-eth-(Z)-ylidene]-pent-2-enedioic acid diethyl ester (51 g, 225mmol) in N,N-dimethylformamide (25OmL) was heated at 1750C for 24 hours to give a dark brown solution. The resulting solution was allowed to cool and a pale brown precipitate slowly formed. The precipitate was removed by filtration and the solids washed with dichloromethane (75ml_) and hexane (10OmL) to give a pale yellow powder. The solids were dried in vacuo (6O0C) to give the title compound as a pale yellow powder, 14.45g (36%) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | In N,N-dimethyl-formamide; at 165℃; for 14.0h; | Step B ethyl 2-methyl-6-oxo-1,6-dihydropyridine-3-carboxylate 5-Ethyl 1-methyl (2E,4Z)-4-(1-aminoethylidene)pent-2-enedioate (10 g, 50 mmol) and DMF (30 mL) were mixed in one 100 mL flask, and the mixture was stirred at 165 C. for 14 hrs. The reaction mixture was cooled to room temperature, then filtered to give the crude product, which was washed with DMF and small amount of methanol to give 5 g (60% yield) of the pure product. LC-MS found: 182.1 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With phosphorus(V) oxybromide; at 130℃; for 4.0h; | Step C ethyl 6-bromo-2-methylnicotinate Ethyl 2-methyl-6-oxo-1,6-dihydropyridine-3-carboxylate (2.0 g, 11 mmol) and POBr3 (8.9 g, 31 mmol) were mixed in one 100 mL flask, and the mixture was stirred at 130 C. for 4 hrs. The reaction mixture was cooled to room temperature and 50 g of ice water was added. The mixture was neutralized to pH=9 with aqueous NaHCO3 solution, extracted twice with EtOAc, dried over sodium sulfate, filtered and concentrated under reduced pressure to give 2.5 g (93% yield) of the desired product. LC-MS found: 244.1 (M+H)+. |
Tags: 3424-43-9 synthesis path| 3424-43-9 SDS| 3424-43-9 COA| 3424-43-9 purity| 3424-43-9 application| 3424-43-9 NMR| 3424-43-9 COA| 3424-43-9 structure
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