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Structure of 21962-49-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 21962-49-2 |
Formula : | C9H7NO2 |
M.W : | 161.16 |
SMILES Code : | N#CC1=CC=C(C=O)C=C1OC |
MDL No. : | MFCD16295254 |
InChI Key : | RIKJENUWHKDHIW-UHFFFAOYSA-N |
Pubchem ID : | 60048534 |
GHS Pictogram: |
![]() ![]() |
Signal Word: | Danger |
Hazard Statements: | H301+H311+H331-H315-H319-H335 |
Precautionary Statements: | P261-P264-P270-P271-P280-P301+P310+P330-P302+P352+P312-P304+P340+P311-P305+P351+P338-P312-P321-P332+P313-P337+P313-P362-P403+P233-P405-P501 |
Class: | 6.1 |
UN#: | 3439 |
Packing Group: | Ⅲ |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.11 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 43.04 |
TPSA ? Topological Polar Surface Area: Calculated from |
50.09 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.53 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.28 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.38 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.47 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.96 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.32 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.88 |
Solubility | 2.11 mg/ml ; 0.0131 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.93 |
Solubility | 1.89 mg/ml ; 0.0117 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.55 |
Solubility | 0.455 mg/ml ; 0.00282 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.37 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.5 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With dicyanozinc;tetrakis(triphenylphosphine) palladium(0); In DMF (N,N-dimethyl-formamide); at 110℃; for 4h; | 4-Formyl-2-methoxybenzonitrile [0276] In an oven-dried flask purged with argon, a mixture of sulfonate (880 mg, 3,096 mmol), zinc cyanide (1,454 g, 12,385 mmol) and tetrakis triphenylphosphine palladium (0) (537 mg, 0,464 mmol) in DMF (30 ml) were stirred at 110C for 4h. Et20 was added to the reaction mixture and the organic layer was washed 3 times with water, dried, filtered and concentrated. The crude compound was then purified by flash chromatography (ethyl acetate-hexanes/3: 7) to provide nitrile (280 mg, 56%). 1H RMN (400 MHz, acetone d6) 8 : 4.11 (s, 3H), 7.68 (dd, 1H, J= 1.2 and 7.7 Hz), 7.72 (d, lH, J= 1. 2 Hz), 7.95 (d, 1H, J= 7.7 Hz), 10.14 (s, 1H), |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With pyridine hydrochloride; for 0.5h;Heating / reflux; | 4-Formyl-2-hydroxybenzonitrile [0277] A mixture of nitrile (280 mg, 1, 737mmol) and pyridine hydrochloride (excess) was stirred and refluxed for 30 min. Water was added to the reaction mixture and extracted 3 times with ethyl acetate. The organic layer was washed 3 times with 10% HC1, dried, filtered and concentratrated to provide crude hydroxynitrile (230 mg, 90%). 1H RMN (400 MHz, acetone d6) 8 : 7.58 (d, 1H, J= 6. 2 Hz), 7.59 (d, 1H, J= 2.1 Hz), 7. 88 (dd, 1H, J= 2.1 and 6.2 Hz), 10. 07 (s, 1H), 10.4 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
tetrakis(triphenylphosphine) palladium(0); In N,N-dimethyl-formamide; at 110℃; for 8h; | A mixture of 4-formyl-2-methoxyphenyl trifluoromethanesulfonate (37.0 g, 130 mmol), zinc cyanide (61.0 g, 521 mmol) and tetrakis triphenylphosphine palladium (0) (22.6 g, 19.5 mmol) in DMF (300 mL) were stirred at 110 0C for 8 h. EtOAc was added to the reaction mixture and the organic layer was washed two times with water, dried, filtered and concentrated. The crude product was then purified by column chromatography (silica gel, ethylacetate/hexanes 3:7) which afforded 4-formyl-2-methoxybenzonitrile.1H NMR (CDCl3, 500 MHz) δ 10.08 (s, IH), 7.80 (d, J= 7.5 Hz, IH), 7.55 (d, J= 7.5 Hz. IH),7.51 (s, IH), 4.06 (s, 3H); LC/MS (IE, m/z) 162.07 [M + I]+. | |
With tetrakis(triphenylphosphine) palladium(0); In N,N-dimethyl-formamide; at 110℃; for 8h; | Step B: 4-Formyl-2-methoxybenzonitrile: A mixture ofthe sulfonate (37.0 g, 130 mmol), zinc cyanide (61.1 g, 521 mmol) and tetrakis triphenylphosphine palladium (0) (22.57 g, 19.53 mmol)in DMF (300 mL) were stirred at 110 C for 8 hr. EtOAc was added to the reaction mixture andthe organic layer was washed two times with water, dried, filtered and concentrated. The crudeproduct was then purified by column chromatography (silica gel, ethylacetate/hexanes 3:7) whichafforded the title compound: LC/MS: (IE, mlz) [M + 1 t = 162.34. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With trimethylsulphonium iodide; sodium hydride; In tetrahydrofuran; dimethyl sulfoxide; at 0 - 20℃;Inert atmosphere; | To a cool solution of NaH (0.16 g, 3.9 mmol) in THF (40 ml) was added dropwise a solution of trimethylsulfonium iodide (0.91 g, 4.5 mmol) in DMSO (20 ml). The resulting mixture was stirred at 00C under N2 for 20 min. The solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.7 mmol) in THF (20 ml) was added. The resulting reaction mixture was stirred at O 0C under N2 for 1 hr, and then it was warmed gradually to room temperature and stirred at that temperature for 12 hr. The starting material was consumed as indicated by TLC (25% ethyl acetate/hexanes). The reaction mixture was cooled to 0 0C and quenched by drop- wise addition of water. The S mixture was extracted with ethyl acetate (2 x 70 mL). The combined organic layers were washed with water, brine, then dried (MgSO4) and filtered. The filtrate was concentrated in vacuo. The residue was purified via column chromatography (silica gel, 10-30% EtOAc-hexanes) to afford 2-methoxy-4-(oxiran-2-yl)benzonitrile. 1H NMR (CDCl3, 500 MHz) δ 7.57 (d, J= 8 Hz, IH), 6.99 (dd, J- 1.1 Hz, J- 1.2 Hz, IH), 6.89 (s, IH), 3.97 (s, 3H), 3.94-3.92 (m, IH), 3.22 (dd, J =0 5.2, Hz, J= 4.1 Hz, IH), 2.77 (J= 2.5 Hz, IH); LC/MS (IE, m/z) 176.33 [M + I]+; tR = 2.55min. | |
With trimethylsulphonium iodide; sodium hydride; In tetrahydrofuran; dimethyl sulfoxide; at 0 - 20℃;Inert atmosphere; | Step C: 2-Methoxy-4-(oxiran-2-yl)benzonitrile: To a cool solution ofNaH (0.16 g, 3.9 mmol) inTHF (40 mL) was added dropwise a solution oftrimethylsulfonium iodide (0.91 g, 4.5 mmol) inDMSO (20 mL). The resulting mixture was stirred at 0C under N2 for 20 min. A solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.72 mmol) in THF (20 mL) was added. The resultingreaction mixture was stirred at ooc under N2 for 1 hr, and then it was warmed gradually to room temperature and stirred at that temperature for 12 hr. The starting material was consumed asindicated by TLC (25%ethyl acetate/hexanes). The reaction mixture was cooled to 0C andquenched with dropwise addition of water. The mixture was extracted with ethyl acetate (2 x 70mL). The combined organic layers were washed with water, brine, then dried (MgS04) and2530filtered. The filtrate was concentrated in vacuo. The residue was purified via column chromatography (silica gel, 10-30% EtOAc-hexanes) to afford 2-methoxy-4-(oxiran-2-yl)benzonitrile: 1H NMR (CDCb, 500 MHz) <> 7.57 (d, .=8Hz, 1H), 6.99 (dd, .= 1.1 Hz,.=1.2 Hz, 1H), 6.89 (s, 1H), 3.97 (s, 3H), 3.94-3.92 (m, 1H), 3.22 (dd, J = 5.2, Hz, J = 4.1 Hz, 1H),2.77 (d, .= 2.5 Hz, 1H); LC/MS: (IE, mlz) [M +It= 176.33. | |
With trimethylsulphonium iodide; sodium hydride; In tetrahydrofuran; dimethyl sulfoxide; at 0 - 20℃; for 12h;Inert atmosphere; | Step C: 2-Methoxy-4-(oxiran-2-yl)benzonitrile: To a cool solution of NaH (0.16 g, 3.9 mmol) inTHF (40 mL) was added dropwise a solution of trimethylsulfonium iodide (0.91 g, 4.5 mmol) inDMSO (20 mL). The resulting mixture was stirred at 0C under N2 for 20 mm. A solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.72 mmol) in THF (20 mL) was added. The resultingreaction mixture was stirred at 0C under N2 for 1 hr, and then it was warmed gradually to room temperature and stirred at that temperature for 12 hr. The starting material was consumed as indicated by TLC (25%ethyl acetate/hexanes). The reaction mixture was cooled to 0C and quenched with dropwise addition of water. The mixture was extracted with ethyl acetate (2 x 70 mL). The combined organic layers were washed with water, brine, then dried (MgSO4) andfiltered. The filtrate was concentrated in vacuo. The residue was purified via column chromatography (silica gel, 10-30% EtOAc-hexanes) to afford 2-methoxy-4-(oxiran-2-yl)benzonitrile: 111 NMR (CDC13, 500 MHz) ö 7.57 (d, J= 8 Hz, 1H), 6.99 (dd, J= 1.1 Hz, J=1.2 Hz, 1H), 6.89 (s, 1H), 3.97 (s, 3H), 3.94-3.92 (m, 1H), 3.22 (dd, J= 5.2, Hz, J= 4.1 Hz, 1H),2.77 (d, J= 2.5 Hz, 1H); LCIMS: (IE, m/z) [M + 1] = 176.33. |
With trimethylsulfonium iodide; sodium hydride; In tetrahydrofuran; dimethyl sulfoxide; mineral oil; at 0 - 20℃; for 13h;Inert atmosphere; | To a cool solution of NaH (0.16 g, 3.9 mmol) in THF (40 mL) was added dropwise a solution of trimethylsulfonium iodide (0.91 g, 4.5 mmol) in DMSO (20 mL). The resulting mixture was stirred at 0C under N2 for 20 min. The solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.7 mmol) in THF (20 mL) was added. The resulting reaction mixture was stirred at 0C under N2 for 1 h, and then it was warmed gradually to room temperature and stirred at that temperature for 12 h. After the starting material was consumed as indicated by TLC (25% ethyl acetate/hexanes), the reaction mixture was cooled to 0C and quenched by the dropwise addition of water. The mixture was extracted with ethyl acetate (2 x 70 mL). The combined organic layers were washed with water, brine, then dried (MgS04) and filtered. The filtrates were concentrated in vacuo. The residue was purified by column chromatography (10-30% EtOAc/hexanes) to afford 2-methoxy-4-(oxiran-2-yl)benzonitrile. 1H- NMR (500 MHz, CDC13) δ 7.57 (d, J= 8Hz, 1H), 6.99 (dd, J= 1.1 Hz, J = 1.2 Hz, 1H), 6.89 (s, 1H), 3.97 (s, 3H), 3.93 (m, 1H), 3.22 (dd, J= 5.2 Hz, J= 4.1 Hz, 1H), 2.77 (J= 2.5 Hz, 1H); LC/MS: [(M+l)] = 176. Resolution of the epoxide was carried out on prep SFC in similar fashion to that described for INTERMEDIATE 2A and 2B to provide fast eluted 7A and slow eluted 7B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tetrakis(triphenylphosphine) palladium(0); at 110℃; for 8h; | Step B: 4-Formyl-2-methoxybenzonitrile: A mixture of the sulfonate (37.0 g, 130 mmol), zinc cyanide (61.1 g, 521 mmol) and tetrakis triphenyiphosphine palladium (0) (22.57 g, 19.53 mmol) in DMF (300 mL) were stirred at 110 C for 8 hr. EtOAc was added to the reaction mixture and the organic layer was washed two times with water, dried, filtered and concentrated. The crude product was then purified by column chromatography (silica gel, ethylacetate/hexanes 3:7) whichafforded the title compound: LC/MS: (IE, m/z) [M + 1] = 162.34. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tetrakis(triphenylphosphine) palladium(0); In N,N-dimethyl-formamide; at 110℃; for 8h; | A mixture of 4-formyl-2-methoxyphenyltrifluoromethanesulfonate (37.0 g, 130 mmol), zinc cyanide (6 1.0 g, 521 mmol) and tetrakistriphenylphosphine palladium (0) (22.6 g, 19.5 mmol) in DME (300 mL) were stirred at 110 c for 8 h. EtOAc was added to the reaction mixture and the organie layer was washed two times with water, dried, filtered and concentrated. The crude product was then purified by column chromatography (silica gel, ethylacetatelhexanes 3:7) which afforded 4-formyl-2-methoxybenzonitrile._Lc/MS (IE, miz) 162.07 [M + 11+. | |
With tetrakis(triphenylphosphine) palladium(0); In N,N-dimethyl-formamide; at 110℃; for 8h; | General procedure: A mixture of the sulfonate (37.0 g, 130 mmol), zinc cyanide (61.1 g, 521mmol) and tetrakis triphenylphosphine palladium (0) (22.57 g, 19.53 mmol) in DMF (300 mL) were stirred at 110 Cfor 8 hr. EtOAc was added to the reaction mixture and the organic layer was washed two times with water, dried,filtered and concentrated. The crude product was then purified by column chromatography (silica gel, ethylacetate/hexanes 3:7) which afforded the title compound: LC/MS: (IE, m/z) [M + 1]+ = 162.34. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a cool solution of NaH (0.16 g, 3.9 mmol) inTHF (40 ml) was added dropwise a solution of trimethylsulfonium iodide (0.9 1 g, 4.5 mmol) inDMSO (20 ml). The resulting mixture was stirred at 0 under N2 for 20 min. The solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.7 mmol) in THF (20 ml) was added. The resultingreaction mixture was stirred at O c under N2 for 1 hr, and then it was warmed gradually to room temperature and stirred at that temperature for 12 hr. The starting material was consumed as indicated by TLC (25% ethyl acetatelhexanes). The reaction mixture was cooled to O c and quenched by drop-wise addition of water. The mixture was extracted with ethyl acetate (2 x 70 mL). The combined organie layers were washed with water, brine, then dried (Mg504) andfiltered. The filtrate was concentrated in yacuo. The residue was purified via column chromatography (silica gel, 10-30% EtOAc-hexanes) to afford 2-methoxy-4-(oxiran-2- yl)benzonitrile. lH NMR (CDC13, 500 MHz) 7.57 (d, J= 8Hz, 1H), 6.99 (dd, J= 1.1 Hz, J=1.2 Hz, 1H), 6.89 (s, 1H), 3.97 (s, 3H), 3.94-3.92 (m, 1H), 3.22 (dd, J= 5.2, Hz, J= 4.1 Hz, 1H),2.77 (J = 2.5 Hz, 1H); LC/MS (IE, miz) 176.33 [M + 11+ | ||
General procedure: To a cool solution of NaH (0.16 g, 3.9 mmol) in THF (40 mL) wasadded dropwise a solution of trimethylsulfonium iodide (0.91 g, 4.5 mmol) in DMSO (20 mL). The resulting mixturewas stirred at 0C under N2 for 20 min. A solution of <strong>[21962-49-2]4-formyl-2-methoxybenzonitrile</strong> (0.60 g, 3.72 mmol) in THF(20 mL) was added. The resulting reaction mixture was stirred at 0C under N2 for 1 hr, and then it was warmedgradually to room temperature and stirred at that temperature for 12 hr. The starting material was consumed asindicated by TLC (25%ethyl acetate/hexanes). The reaction mixture was cooled to 0C and quenched with dropwiseaddition of water. The mixture was extracted with ethyl acetate (2 x 70 mL). The combined organic layers werewashed with water, brine, then dried (MgSO4) and filtered. The filtrate was concentrated in vacuo. The residue was purified via column chromatography (silica gel, 10-30% EtOAc-hexanes) to afford 2-methoxy-4-(oxiran-2-yl)benzonitrile:1H NMR (CDCl3, 500 MHz) δ 7.57 (d, J = 8 Hz, 1H), 6.99 (dd, J = 1.1 Hz, J = 1.2 Hz, 1H), 6.89 (s, 1H),3.97 (s, 3H), 3.94-3.92 (m, 1H), 3.22 (dd, J = 5.2, Hz, J = 4.1 Hz, 1H), 2.77 (d, J = 2.5 Hz, 1H); LC/MS: (IE, m/z) [M+ 1]+ = 176.33. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a stirred solution of 4-bromo-2-methoxybenzonitrile (1.0 g, 4.7 mmol) in 30 mL of anhydrous THF was added BuLi (1.6 M, 3.3 mL, 5.2 mmol) dropwise at -78 C under nitrogen atmosphere. After the addition, the pale red solution was stirred for 5 min at -78 C and dry DMF (0.6 mL) then added dropwise. After 20 min, the reaction mixture was poured onto a saturated solution of sodium chloride (50 mL). The organic phase was separated, extracted with diethyl ether (100 mL), dried over Na2SO4 and distilled off the solvent to afford 4-formyl-2-methoxybenzonitrile. MS m/z: 162 (M+1)+. |