Structure of 876343-10-1
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CAS No. : | 876343-10-1 |
Formula : | C6H3ClIN3 |
M.W : | 279.47 |
SMILES Code : | IC1=CC2=C(Cl)N=CN=C2N1 |
MDL No. : | MFCD11518919 |
InChI Key : | DXPVKZYVQANEDW-UHFFFAOYSA-N |
Pubchem ID : | 45789732 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 51.62 |
TPSA ? Topological Polar Surface Area: Calculated from |
41.57 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.76 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.31 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.22 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.7 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.18 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.23 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.63 |
Solubility | 0.065 mg/ml ; 0.000233 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.82 |
Solubility | 0.422 mg/ml ; 0.00151 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.1 |
Solubility | 0.0221 mg/ml ; 0.0000791 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.36 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.13 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate;bis-triphenylphosphine-palladium(II) chloride; In 1,4-dioxane; water; at 100℃;Product distribution / selectivity; | te^-ButyI4-(4-chloro-7Jy-pyrrolo[2,3-«qpyrimidm-6-yl)-3,6-dihydropyridine-l(2fl)-carboxylate (compound of Formula VIII-Boc).; IXMKCn[228] To a suspension of <strong>[876343-10-1]4-chloro-6-iodo-7H-pyrrolo[2,3-d]pyrimidine</strong> (5.0g,O.OlSmol) in 1,4-dioxane (120mL) and water (30mL) were added 4-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-l-carboxylic acid tert-butyl ester (5.97g,0.0193mol), potassium carbonate (4.9g, 0.036mol) and PdCl2(dppf)-CH2Cl2 (0.73g,0.89mmol). The flask was evacuated and refilled with N2 (3x). The mixture was heated at100C overnight. LC-MS showed the reaction was complete. The mixture was diluted withethyl acetate (200mL), then washed with brine (2x50mL), and dried over anhydrous sodiumsulfate. The filtrate was concentrated under reduced pressure to wlOOmL, the resulting whiteprecipitate was collected by filtration to give the first batch of the title compound. The filtratewas concentrated and the residue was purified by chromatography on silica gel, eluting withHex:EtOAc = 70:30 -> 50:50 to give a white solid (containing pinacol), which was furthercrystallized with EtOAc/hexanes to give the second batch of the title compound as a whitesolid. LC-MS (ES, Pos.): 335/337 (3/1) [MH+]. 'H NMR (CDC13,400 MHz): 5 = 1.51 (s,9H), 2.61 (m, 2H), 3.70 (m, 2H), 4.20 (m, 2H), 6.27 (s, 1H), 6.55 (s, 1H), 8.61 (s, 1H), 10.3(brs, 1H). | |
With bis-triphenylphosphine-palladium(II) chloride; sodium carbonate; In propan-1-ol; water; at 100℃; for 18h; | 4-(4-(5-Fluoro-3-r4-(1-fluoro-cvclopropyl)-benzoylaminol-2-methyl-phenyl)-7H- Pyrrolor2 -dlpyrimidin-6-yl)-3,6-dihvdro-2H-pyridine-1-carboxylic acid dimethylamide(1 ) 4-(4-Chloro-7H-pyrrolor2,3-dlpyrimidin-6-yl)-3,6-dihvdro-2H-pyridine-1-carboxylic acid tert-butyl ester, Intermediate 1To a mixture of <strong>[876343-10-1]4-chloro-6-iodo-7H-pyrrolo[2,3-d]pyrimidine</strong> (2.6 g, 9.30 mmol) and dichlorobis(triphenylphosphine)palladium (II) (0.52 g, 0.74 mmol) in 1-propanol (120 ml) and aqueous sodium carbonate solution (2M, 10.23 ml, 20.46 mmol), 4-(4, 4,5,5- tetramethyl-[1 ,2,3]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester (3.02 g, 9.77 mmol) was added. The mixture was heated to 100C for 18 hours. After cooling the brownish mixture was diluted with 200 ml water and extracted with DCM. The organic layer was washed with brine (2x) and dried over sodium sulfate, than filtered and evaporated. The residue was purified by flash chromatography on silica (cyclohexane/EtOAc 1 :1 ) to afford the compound Intermediate 1 as a beige solid.MS (ESI): 335 [M+H]+ , 1H-NMR (DMSO-d6): delta (ppm) 12.64 (br s, 1 H), 8.56 (s, 1 H), 6.59 (s, 2H), 4.08 (br s, 2H), 3.57 (m, 2H), 2.55 (m, 2H), 1.45 (s, 9H). (2) 4-Chloro-6-(1.2.3.6-tetrahvdro-pyridin-4-vn-7H-pyrrolor2.3-dlpyrimidine. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With methanol; sodium hydroxide; In tetrahydrofuran; for 1h; | 4-Chloro-6-iodo-7H-pyrrolo [2,3-i/] yrimidine (37) Compound 53 (14.4 g, 34.2 mmol) was mixed with THF (300 ml) and a NaOH/MeOH-solution (5M, 49 ml, 244 mmol) and stirred for 1 hour before a saturated aq. NH4C1 solution (300 ml) was added. The mixture was concentrated in vacuo to remove most of the solvent before it was filtered and washed with water (2 x 30 ml). The crude product was precipitated from boiling acetonitrile (9.2 g in 100 ml). This gave 8.99 g (32.2 mmol, 94 %) of 54 as a white solid, mp 220 C (dec); purity: 98% (HPLC), tR = 17.5 min; 1H NMR (400 MHz, DMSO-dg) delta: 13.14 (s, 1H), 8.53 (s, 1H), 6.89 (d, J= 1.8, 1H); 13C NMR (100 MHz, DMSO-dg) delta: 153.8, 150.3, 148.3, 118.6, 108.2, 84.8; IR (neat, cm"1): 2790, 1549, 1327, 983, 752; HRMS (EI, 70 eV, m/z): 278.9053 (calcd. C6H3N335C1I, 278.9050, [M]+). |
With methanol; sodium hydroxide; In tetrahydrofuran; for 0.166667h; | 4-ChIoro-6-iodo-7JH-pyrrolo [2,3-d pyrimidine (compound of Formula IV).ci[226]; To a stirred solution of 4-chloro-6-iodo-7-(phenylsulfonyl)-7./7-pyrrolo[2,3-djpyrimidine (538mg, 1.283mmol) in THF (6.0mL) was added 5M sodium hydroxidemethanolic solution (1.8mL, 0.009mmol). After lOmin the solvent was removed underreduced pressure, sat. ammonium chloride solution (S.OmL) was added and the mixtureevaporated to dryness. The resulting solid was triturated with water to afford 4-chloro-6-iodo-7No.-pyrrolo[2,3-^pyrimidine. IH NMR (d6-DMSO, 400 MHz) 6.90(1H, s) and 8.55 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In butan-1-ol; at 145℃; | General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | 4-Chloro-7-(phenylsulfonyl)-7H-pyrrolo [2,3-d]pyrimidine (1) [20], (5.42g, 18.5mmol) was iodinated as previously described [20]. This gave a 9: 1 mixture of 2 and 3 (6.0g) which was mixed with THF (125mL) and 5M NaOH solution in MeOH (21mL). After 2h stirring at room temperature, a saturated aqueous NH4Cl-solution (125mL) was added and the mixture concentrated. The formed precipitate was collected by filtration and washed with water. Trituration from boiling acetonitrile (1g/10mL) gave 3.96g (14.2mmol, 77%) of 4 as a white solid, mp 219C (dec.) (lit. [20] 220C); 1H NMR (400MHz, DMSO-d6) delta: 12.57 (s, 1H), 8.51 (s, 1H), 6.88 (s, 1H). The 1H NMR data is in agreement with that previously reported [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | In butan-1-ol; at 145℃; for 24h; | General procedure thermal amination of 37 Compound 37 (1 mmol) was mixed with the selected amine (3 mmol, 3 eq) and n- butanol (5 ml) and agitated at 145 C for 14-24 hours. Then the mixture was cooled to 22 C, diluted with water (15 ml) and ethyl acetate (40 ml). After phase separation, the water phase was back extracted with more EtOAc (2 x 10 ml). The combined organic phases were washed with brine (10 ml), dried over anhydrous Na2S04, filtered and concentrated in vacuo, before the crude mixture was purified as specified for each individual compound. o-N-(l-phenylethyl)-7H-pyrrolo[2,3-i ]pyrimidin-4-amine is was performed as described above starting with compound 37 (2.01 g, 7.20 mmol) and (i?)-l-phenylethaneamine (2.73 mL, 21.5 mmol). The reaction time was 24 hours. The crude product was purified by silica-gel column chromatography (EtOAc/n-pentane, 4/1 , Rf = 0.28). Drying gave 2.24 g (6.20 mmol, 86%) of (R)-39 as a pale yellow solid, mp 214 - 216 C; HPLC purity: 96%, tR = 20.9 min; [a]D2 = -227.4 (c 0.34, DMSO); 1H NMR (400 MHz, DMSO-dg) delta: 12.06 (s, 1H), 7.97 (s, 1H), 7.74 - 7.72 (m, 1H), 7.40 - 7.38 (m, 2H), 7.31 - 7.27 (m, 2H), 7.20 - 7.16 (m, 1H), 6.93 (s, 1H), 5.50 - 5.42 (m, 1H), 1.50 (d, J = 6.9, 3H); 13C NMR (100 MHz, DMSO-de) delta: 153.5, 152.6 , 151.5, 145.4, 128.2 (2C), 126.4, 126.0 (2C), 108.5, 105.0, 72.7, 48.6, 22.8; IR (neat, cm"1): 3088, 2710, 1585, 1476, 1304, 888, 695; HRMS (APCI/ASAP, m/z): 365.0263 (calcd. C14H14N4I, 365.0263 [M+H]+). |
In butan-1-ol; at 145℃; | General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In butan-1-ol; at 145℃; | General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In butan-1-ol; at 145℃; | General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound |