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Chemical Structure| 876343-10-1 Chemical Structure| 876343-10-1

Structure of 876343-10-1

Chemical Structure| 876343-10-1

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Product Details of [ 876343-10-1 ]

CAS No. :876343-10-1
Formula : C6H3ClIN3
M.W : 279.47
SMILES Code : IC1=CC2=C(Cl)N=CN=C2N1
MDL No. :MFCD11518919
InChI Key :DXPVKZYVQANEDW-UHFFFAOYSA-N
Pubchem ID :45789732

Safety of [ 876343-10-1 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 876343-10-1 ] Show Less

Physicochemical Properties

Num. heavy atoms 11
Num. arom. heavy atoms 9
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 2.0
Num. H-bond donors 1.0
Molar Refractivity 51.62
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

41.57 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.76
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

2.31
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.22
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

1.7
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

3.18
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.23

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.63
Solubility 0.065 mg/ml ; 0.000233 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.82
Solubility 0.422 mg/ml ; 0.00151 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-4.1
Solubility 0.0221 mg/ml ; 0.0000791 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Moderately soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.36 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<0.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.13

Application In Synthesis of [ 876343-10-1 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 876343-10-1 ]

[ 876343-10-1 ] Synthesis Path-Downstream   1~35

  • 1
  • [ 876343-10-1 ]
  • [ 375853-82-0 ]
  • [ 876343-11-2 ]
YieldReaction ConditionsOperation in experiment
With potassium carbonate;bis-triphenylphosphine-palladium(II) chloride; In 1,4-dioxane; water; at 100℃;Product distribution / selectivity; te^-ButyI4-(4-chloro-7Jy-pyrrolo[2,3-«qpyrimidm-6-yl)-3,6-dihydropyridine-l(2fl)-carboxylate (compound of Formula VIII-Boc).; IXMKCn[228] To a suspension of <strong>[876343-10-1]4-chloro-6-iodo-7H-pyrrolo[2,3-d]pyrimidine</strong> (5.0g,O.OlSmol) in 1,4-dioxane (120mL) and water (30mL) were added 4-(4,4,5,5-tetramethyl-[l,3,2]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-l-carboxylic acid tert-butyl ester (5.97g,0.0193mol), potassium carbonate (4.9g, 0.036mol) and PdCl2(dppf)-CH2Cl2 (0.73g,0.89mmol). The flask was evacuated and refilled with N2 (3x). The mixture was heated at100C overnight. LC-MS showed the reaction was complete. The mixture was diluted withethyl acetate (200mL), then washed with brine (2x50mL), and dried over anhydrous sodiumsulfate. The filtrate was concentrated under reduced pressure to wlOOmL, the resulting whiteprecipitate was collected by filtration to give the first batch of the title compound. The filtratewas concentrated and the residue was purified by chromatography on silica gel, eluting withHex:EtOAc = 70:30 -> 50:50 to give a white solid (containing pinacol), which was furthercrystallized with EtOAc/hexanes to give the second batch of the title compound as a whitesolid. LC-MS (ES, Pos.): 335/337 (3/1) [MH+]. 'H NMR (CDC13,400 MHz): 5 = 1.51 (s,9H), 2.61 (m, 2H), 3.70 (m, 2H), 4.20 (m, 2H), 6.27 (s, 1H), 6.55 (s, 1H), 8.61 (s, 1H), 10.3(brs, 1H).
With bis-triphenylphosphine-palladium(II) chloride; sodium carbonate; In propan-1-ol; water; at 100℃; for 18h; 4-(4-(5-Fluoro-3-r4-(1-fluoro-cvclopropyl)-benzoylaminol-2-methyl-phenyl)-7H- Pyrrolor2 -dlpyrimidin-6-yl)-3,6-dihvdro-2H-pyridine-1-carboxylic acid dimethylamide(1 ) 4-(4-Chloro-7H-pyrrolor2,3-dlpyrimidin-6-yl)-3,6-dihvdro-2H-pyridine-1-carboxylic acid tert-butyl ester, Intermediate 1To a mixture of <strong>[876343-10-1]4-chloro-6-iodo-7H-pyrrolo[2,3-d]pyrimidine</strong> (2.6 g, 9.30 mmol) and dichlorobis(triphenylphosphine)palladium (II) (0.52 g, 0.74 mmol) in 1-propanol (120 ml) and aqueous sodium carbonate solution (2M, 10.23 ml, 20.46 mmol), 4-(4, 4,5,5- tetramethyl-[1 ,2,3]dioxaborolan-2-yl)-3,6-dihydro-2H-pyridine-1-carboxylic acid tert-butyl ester (3.02 g, 9.77 mmol) was added. The mixture was heated to 100C for 18 hours. After cooling the brownish mixture was diluted with 200 ml water and extracted with DCM. The organic layer was washed with brine (2x) and dried over sodium sulfate, than filtered and evaporated. The residue was purified by flash chromatography on silica (cyclohexane/EtOAc 1 :1 ) to afford the compound Intermediate 1 as a beige solid.MS (ESI): 335 [M+H]+ , 1H-NMR (DMSO-d6): delta (ppm) 12.64 (br s, 1 H), 8.56 (s, 1 H), 6.59 (s, 2H), 4.08 (br s, 2H), 3.57 (m, 2H), 2.55 (m, 2H), 1.45 (s, 9H). (2) 4-Chloro-6-(1.2.3.6-tetrahvdro-pyridin-4-vn-7H-pyrrolor2.3-dlpyrimidine.
  • 2
  • [ 876343-09-8 ]
  • [ 876343-10-1 ]
YieldReaction ConditionsOperation in experiment
94% With methanol; sodium hydroxide; In tetrahydrofuran; for 1h; 4-Chloro-6-iodo-7H-pyrrolo [2,3-i/] yrimidine (37) Compound 53 (14.4 g, 34.2 mmol) was mixed with THF (300 ml) and a NaOH/MeOH-solution (5M, 49 ml, 244 mmol) and stirred for 1 hour before a saturated aq. NH4C1 solution (300 ml) was added. The mixture was concentrated in vacuo to remove most of the solvent before it was filtered and washed with water (2 x 30 ml). The crude product was precipitated from boiling acetonitrile (9.2 g in 100 ml). This gave 8.99 g (32.2 mmol, 94 %) of 54 as a white solid, mp 220 C (dec); purity: 98% (HPLC), tR = 17.5 min; 1H NMR (400 MHz, DMSO-dg) delta: 13.14 (s, 1H), 8.53 (s, 1H), 6.89 (d, J= 1.8, 1H); 13C NMR (100 MHz, DMSO-dg) delta: 153.8, 150.3, 148.3, 118.6, 108.2, 84.8; IR (neat, cm"1): 2790, 1549, 1327, 983, 752; HRMS (EI, 70 eV, m/z): 278.9053 (calcd. C6H3N335C1I, 278.9050, [M]+).
With methanol; sodium hydroxide; In tetrahydrofuran; for 0.166667h; 4-ChIoro-6-iodo-7JH-pyrrolo [2,3-d pyrimidine (compound of Formula IV).ci[226]; To a stirred solution of 4-chloro-6-iodo-7-(phenylsulfonyl)-7./7-pyrrolo[2,3-djpyrimidine (538mg, 1.283mmol) in THF (6.0mL) was added 5M sodium hydroxidemethanolic solution (1.8mL, 0.009mmol). After lOmin the solvent was removed underreduced pressure, sat. ammonium chloride solution (S.OmL) was added and the mixtureevaporated to dryness. The resulting solid was triturated with water to afford 4-chloro-6-iodo-7No.-pyrrolo[2,3-^pyrimidine. IH NMR (d6-DMSO, 400 MHz) 6.90(1H, s) and 8.55
  • 3
  • [ 876343-10-1 ]
  • [ 1418127-62-4 ]
  • 4
  • [ 876343-10-1 ]
  • [ 1418128-20-7 ]
  • 5
  • [ 876343-10-1 ]
  • [ 1418127-77-1 ]
  • 6
  • [ 876343-10-1 ]
  • [ 876460-94-5 ]
  • 7
  • [ 876343-10-1 ]
  • [ 1418128-31-0 ]
  • 8
  • [ 876343-10-1 ]
  • [ 1418128-35-4 ]
  • 9
  • [ 876343-10-1 ]
  • [ 140373-17-7 ]
  • [ 1637437-41-2 ]
YieldReaction ConditionsOperation in experiment
In butan-1-ol; at 145℃; General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound
  • 10
  • [ 3680-71-5 ]
  • [ 876343-10-1 ]
  • 12
  • [ 186519-89-1 ]
  • [ 876343-10-1 ]
YieldReaction ConditionsOperation in experiment
77% 4-Chloro-7-(phenylsulfonyl)-7H-pyrrolo [2,3-d]pyrimidine (1) [20], (5.42g, 18.5mmol) was iodinated as previously described [20]. This gave a 9: 1 mixture of 2 and 3 (6.0g) which was mixed with THF (125mL) and 5M NaOH solution in MeOH (21mL). After 2h stirring at room temperature, a saturated aqueous NH4Cl-solution (125mL) was added and the mixture concentrated. The formed precipitate was collected by filtration and washed with water. Trituration from boiling acetonitrile (1g/10mL) gave 3.96g (14.2mmol, 77%) of 4 as a white solid, mp 219C (dec.) (lit. [20] 220C); 1H NMR (400MHz, DMSO-d6) delta: 12.57 (s, 1H), 8.51 (s, 1H), 6.88 (s, 1H). The 1H NMR data is in agreement with that previously reported [20].
  • 14
  • [ 876343-10-1 ]
  • [ 1637438-32-4 ]
  • 15
  • [ 876343-10-1 ]
  • C21H20N4O [ No CAS ]
  • 16
  • [ 876343-10-1 ]
  • [ 1637438-64-2 ]
  • 17
  • [ 876343-10-1 ]
  • [ 1637569-24-4 ]
  • 18
  • [ 876343-10-1 ]
  • [ 497841-30-2 ]
  • 19
  • [ 876343-10-1 ]
  • [ 497841-27-7 ]
  • 22
  • [ 876343-10-1 ]
  • [ 1637438-12-0 ]
  • 23
  • [ 876343-10-1 ]
  • [ 1637437-61-6 ]
  • 24
  • [ 876343-10-1 ]
  • [ 1637438-04-0 ]
  • 25
  • [ 876343-10-1 ]
  • [ 1637437-96-7 ]
  • 26
  • [ 876343-10-1 ]
  • C21H17FN4O2 [ No CAS ]
  • 27
  • [ 876343-10-1 ]
  • C21H19FN4O2 [ No CAS ]
  • 28
  • [ 876343-10-1 ]
  • [ 3886-69-9 ]
  • [ 1643962-37-1 ]
YieldReaction ConditionsOperation in experiment
86% In butan-1-ol; at 145℃; for 24h; General procedure thermal amination of 37 Compound 37 (1 mmol) was mixed with the selected amine (3 mmol, 3 eq) and n- butanol (5 ml) and agitated at 145 C for 14-24 hours. Then the mixture was cooled to 22 C, diluted with water (15 ml) and ethyl acetate (40 ml). After phase separation, the water phase was back extracted with more EtOAc (2 x 10 ml). The combined organic phases were washed with brine (10 ml), dried over anhydrous Na2S04, filtered and concentrated in vacuo, before the crude mixture was purified as specified for each individual compound. o-N-(l-phenylethyl)-7H-pyrrolo[2,3-i ]pyrimidin-4-amine is was performed as described above starting with compound 37 (2.01 g, 7.20 mmol) and (i?)-l-phenylethaneamine (2.73 mL, 21.5 mmol). The reaction time was 24 hours. The crude product was purified by silica-gel column chromatography (EtOAc/n-pentane, 4/1 , Rf = 0.28). Drying gave 2.24 g (6.20 mmol, 86%) of (R)-39 as a pale yellow solid, mp 214 - 216 C; HPLC purity: 96%, tR = 20.9 min; [a]D2 = -227.4 (c 0.34, DMSO); 1H NMR (400 MHz, DMSO-dg) delta: 12.06 (s, 1H), 7.97 (s, 1H), 7.74 - 7.72 (m, 1H), 7.40 - 7.38 (m, 2H), 7.31 - 7.27 (m, 2H), 7.20 - 7.16 (m, 1H), 6.93 (s, 1H), 5.50 - 5.42 (m, 1H), 1.50 (d, J = 6.9, 3H); 13C NMR (100 MHz, DMSO-de) delta: 153.5, 152.6 , 151.5, 145.4, 128.2 (2C), 126.4, 126.0 (2C), 108.5, 105.0, 72.7, 48.6, 22.8; IR (neat, cm"1): 3088, 2710, 1585, 1476, 1304, 888, 695; HRMS (APCI/ASAP, m/z): 365.0263 (calcd. C14H14N4I, 365.0263 [M+H]+).
In butan-1-ol; at 145℃; General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound
  • 29
  • [ 876343-10-1 ]
  • [ 140-75-0 ]
  • [ 1637569-25-5 ]
YieldReaction ConditionsOperation in experiment
In butan-1-ol; at 145℃; General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound
  • 30
  • [ 876343-10-1 ]
  • [ 20989-17-7 ]
  • [ 1643962-38-2 ]
YieldReaction ConditionsOperation in experiment
In butan-1-ol; at 145℃; General procedure: Compound 1a-d or 54 (1 mmol) was mixed with the selected amine, 2-25, (3 mmol) and n-butanol (5 ml) and agitated at145 C for 14-24 h. Then the mixture was cooled to 22 C, dilutedwith water (15 ml) and ethyl acetate (40 ml). After phase separation,the water phase was back extracted with more ethyl acetate(2 10 ml). The combined organic phases were washed with brine(10 ml), dried over anhydrous Na2SO4, filtered and concentrated invacuo, before the crude mixture was purified as specified for eachindividual compound
  • 31
  • [ 3680-71-5 ]
  • [ 876343-10-1 ]
  • 32
  • [ 876343-10-1 ]
  • [ 1637438-75-5 ]
  • 33
  • [ 876343-10-1 ]
  • [ 1637438-57-3 ]
  • 34
  • [ 876343-10-1 ]
  • (S)-4-(4-((1-(4-fluorophenyl)-2-hydroxyethyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-3-methoxybenzaldehyde [ No CAS ]
  • 35
  • [ 876343-10-1 ]
  • (S)-2-(4-fluorophenyl)-2-((6-(4-(hydroxymethyl)-2-methoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)ethan-1-ol [ No CAS ]
 

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