Structure of 7724-12-1
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Batch number can be found on the product's label following the word 'Batch'.
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CAS No. : | 7724-12-1 |
Formula : | C8H5N3S |
M.W : | 175.21 |
SMILES Code : | NC1=CC=C2N=C(SC2=C1)C#N |
MDL No. : | MFCD11040279 |
InChI Key : | ZOHSEULTWOYIMS-UHFFFAOYSA-N |
Pubchem ID : | 14157112 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H319 |
Precautionary Statements: | P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 48.74 |
TPSA ? Topological Polar Surface Area: Calculated from |
90.94 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.46 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.67 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.76 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.22 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.36 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.49 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.53 |
Solubility | 0.513 mg/ml ; 0.00293 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.19 |
Solubility | 0.112 mg/ml ; 0.00064 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.69 |
Solubility | 0.354 mg/ml ; 0.00202 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.18 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.37 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | In dimethyl sulfoxide; at 120℃; | (C) Synthesis of 2-cyano-6-aminobenzothiazole (4) Potassium cyanide (1.29 g, 19.7 mmol) was added to dimethyl sulfoxide (DMSO, 150 mL). After argon substitution, the mixture was refluxed overnight at 135° C. with stirring. The temperature was lowered to 120° C., and Compound 3 (1.02 g, 5.55 mmol) dissolved in DMSO (20 mL) was added. After disappearance of the starting materials was confirmed by thin layer chromatography (developing solvent: ethyl acetate/n-hexane=2/1), the reaction mixture was poured into a mixed solution of 1.0 mol/L potassium dihydrogenphosphate solution (100 mL) and diethyl ether, (150 mL), and the diethyl ether layer was separated. The aqueous layer was extracted 5 times with ethyl acetate, the organic layer was mixed with the diethyl ether layer, and this organic solvent layer was washed twice with purified water and twice with saturated brine. The organic layer was dried over anhydrous sodium sulfate and concentrated under reduced pressure. The residue was purified by silica gel column chromatography (developing solvent: ethyl acetate/n-hexane=1/4 to 1/2) to obtain Compound 4 as yellow solid (521 mg, 54percent yield). 1H-NMR (300 MHz, CDCl3) delta 4.13 (br, 2H), 6.96 (dd, 1H, J=2.4, 8.9 Hz), 7.09 (d, 1H J=2.4 Hz), 7.95 (d, 1H, J=8.9 Hz). MS (ESI+) 176.0, [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | (D) Synthesis of 2-cyano-6-methylaminobenzothiazole (5) Formaldehyde (37percent (v/v), 48 mg, 0.60 mmol) dissolved in tetrahydrofuran (THF, 20 mL) was added with 180 mmol/L sulfuric acid (3.2 mL, 0.6 mmol), and stirred at room temperature for several minutes. Compound 4 (99 mg, 0.57 mmol) and sodium borohydride (23 mg, 0.62 mmol) were dissolved in THF (40 mL), and added to the reaction mixture, and the mixture was stirred at room temperature. After progression of the reaction was confirmed by thin layer chromatography (developing solvent: ethyl acetate/n-hexane=2/1), the reaction mixture was added with purified water, and then added with saturated brine, and the aqueous layer was separated from the THF layer. The aqueous layer was extracted 5 times with ethyl acetate, the organic layer was mixed with the THF layer, and this organic solvent layer was dried over anhydrous sodium sulfate, then concentrated under reduced pressure. The residue was purified by silica gel chromatography (developing solvent: ethyl acetate/n-hexane=1/8 to 1/6) to obtain Compound 5 (66 mg, 29percent yield). 1H-NMR (300 MHz, CDCl3) delta 2.94 (d, 3H, J=5.1 Hz), 4.27 (br, 1H), 6.88 (dd, 1H, J=2.4, 8.9 Hz), 6.92 (d, 1H, J=2.4 Hz), 7.92 (d, 1H, J=8.9 Hz). 13C-NMR (75 MHz, CDCl3) delta 30.4, 99.2, 113.9, 116.8, 125.4, 129.5, 138.8, 144.6, 149.9. MS (EI+) 189, M+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
E) Synthesis of N-methylaminoluciferin (10); D-Cysteine hydrochloride monohydrate (102 mg, 0.58 mmol) was dissolved in purified water degassed with argon, and its pH was adjusted to 7.9 with a 0.5 mol/L potassium carbonate solution to prepare D-cysteine solution. Compound 4 (45 mg, 0.24 mmol) was dissolved in methanol (15 mL) degassed with argon, and added with the D-cysteine solution. After argon substitution, the mixture was stirred at room temperature under light shielding condition. The reaction mixture's pH was adjusted to about 4 by adding several drops of hydrochloric acid, and methanol was evaporated. The remaining aqueous layer was extracted 3 times with ethyl acetate. The organic layer was washed with saturated brine, dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by preparative HPLC (Eluent A=water/0.1percent trifluoroacetic acid, Eluent B=80percent acetonitrile/20percent water/0.1percent trifluoroacetic acid, A/B=80/20 to 20/80 (20 minutes)) (54 mg, 78percent yield) and recrystallized from ethanol/n-hexane to obtain Compound 10. M.p. 132-134° C. (dec.). 1H-NMR (300 MHz, CD3OD) delta 2.84 (s, 3H), 3.67-3.78 (m, 2H), 5.35 (t, 1H, J=9.1 Hz), 6.88 (dd, 1H, J=2.3, 9.0 Hz), 6.99 (d, 1H, J=2.3 Hz), 7.75 (d, 1H, J=9.0 Hz). 13C-NMR (75 MHz, CD3OD) delta 32.0, 35.8, 79.2, 104.3, 118.0, 125.7, 140.0, 147.9, 148.5, 157.0, 167.9, 173.3. HRMS (ESI+) Calcd for [M+H]+: 294.0371, Found: 294.0340. Anal. Calcd for C12H11N3O2S2*0.25H2O: C, 48.4; H, 3.9; N, 14.1, Found: C, 48.5; H, 4.2; N, 13.7. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | (F) Synthesis of 2-cyano-N-dimethylaminobenzothiazole (6) Formaldehyde (37percent (v/v), 390 mg, 4.85 mmol) was dissolved in tetrahydrofuran (THF, 20 mL), and added with 180 mmol/L sulfuric acid (3.7 mL, 0.7 mmol), and the mixture was stirred at room temperature for several minutes. Compound 4 (119 mg, 0.68 mmol) and sodium borohydride (26 mg, 0.70 mmol) were dissolved in THF (40 mL), and added to the reaction mixture, and the mixture was stirred at room temperature. After progression of the reaction was confirmed by thin layer chromatography (developing solvent: ethyl acetate/n-hexane=2/1), the reaction mixture was added with purified water, then added with saturated brine, and the aqueous layer was separated from the THF layer. After the aqueous layer was extracted 5 times with ethyl acetate, the organic layer was mixed with the THF layer, dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified by silica gel chromatography (developing solvent: ethyl acetate/n-hexane =1/6 to 1/4) to obtain Compound 6 (74 mg, 54percent yield). 1H-NMR (300 MHz, CDCl3) delta 3.10 (s, 6H), 7.01 (d, 1H, J=2.6 Hz), 7.06 (dd, 1H, J=2.6, 9.2 Hz), 7.98 (d, 1H, J=9.2 Hz). 13C-NMR (75 MHz, CDCl3) delta 40.6, 100.7, 114.0, 114.8, 125.1, 129.4, 138.6, 143.8, 150.6. MS (EI+) 203, M+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | (C) Synthesis of 2-cyano-6-(4'-benzyloxycarbonylamidophenethyl)-aminobenzothiazole (18) Compound 17 (376 mg, 1.40 mmol) was dissolved in THF (70 mL), and the solution was added with 180 mmol/L sulfuric acid (8 mL, 1.4 mmol), and stirred at room temperature for several minutes. The mixture was added with Compound 4 and sodium borohydride (54 mg, 1.43 mmol) dissolved in THF (60 mL) were added to mixture, and stirred at room temperature. After progression of the reaction was confirmed by thin layer chromatography (developing solvent: ethyl acetate/n-hexane=2/1), the reaction mixture was added with purified water and added with saturated brine, then the aqueous layer was separated from the THF layer. After the aqueous layer was extracted 5 times with ethyl acetate, the organic layer was mixed with the THF layer, dried over anhydrous sodium sulfate, and concentrated under reduced pressure. The residue was purified twice by silica gel chromatography (developing solvent: ethyl acetate/n-hexane=1/6 to 1/4 to 1/2) to obtain Compound 18 (157 mg, 29percent yield). 1H-NMR (300 MHz, CDCl3) delta 2.93 (t, 2H, J=6.9 Hz), 3.45 (td, 2H, J=6.1, 6.9 Hz), 4.19 (br, 1H), 5.20 (s, 2H), 6.66 (br, 1H), 6.83 (dd, 1H, J=2.3, 9.0 Hz), 6.93 (d, 1H, J=2.3 Hz), 7.16 (td, 2H, J=1.8, 8.4 Hz), 7.29-7.43 (m, 7H), 7.90 (d, 1H, J=9.0 Hz). 13C-NMR (75 MHz, CDCl3) delta 34.2, 44.6, 66.8, 99.8, 113.8, 116.9, 119.1, 125.3, 127.9, 128.1, 128.2, 128.4, 129.1, 133.5, 135.9, 136.4, 138.6, 144.5, 148.7, 153.4. HRMS (ESI+) Calcd for [M+Na]+: 451.1205, Found: 451.1243. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 4-methyl-morpholine; trifluoroacetic acid; In tetrahydrofuran; diethyl ether; dichloromethane; ethyl acetate; methoxybenzene; acetonitrile; | Part E. Synthesis of 4-(6-(2-cyanobenzo[d]thiazol-6-ylamino)-6-oxohexylcarbamoyl)-2-(3-(dimethylamino)-6-(dimethyliminio)-6H-xanthen-9-yl)benzoate (compound 3082) 6-(tert-Butoxycarbonylamino)hexanoic acid (316 mg) was mixed with anhydrous THF (10 mL), <strong>[7724-12-1]6-aminobenzo[d]thiazole-2-carbonitrile</strong> (200 mg), iso-butylchloroformate (193 muL), and N-methylmorpholine (314 muL) at -4° C. The reaction was allowed to stir overnight at RT. The reaction was partitioned between ethyl acetate and bicarbonate. The ethyl acetate layer was evaporated, and the residue was eluted through silica with heptane: ethyl acetate (1:2). Yield 354 mg. tert-Butyl 6-(2-cyanobenzo[d]thiazol-6-ylamino)-6-oxohexylcarbamate (350 mg) was added to cold (0° C.) solution of dichloromethane (4 mL), trifluoroacetic acid (4 mL), and anisole (400 muL). After 135 minutes, the majority of solvent was evaporated, and 10 mL acetonitrile and 30 mL of diethyl ether was added. The mixture was allowed to sit overnight. The precipitate was isolated and used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1. Weigh 175 mg Boc-glycine and 150 mg NMM into 20 mL THF.2. Add 100mg of isobutyl chloroformate under nitrogen atmosphere at 0 ° C and react at 0 ° C for 30min.3. To the above reaction solution was added 87.5mg CABT (purchased from Shanghai Ou Kun Chemical Co., Ltd.), the reaction was stirred at 0 ° C 2h, then stirred at room temperature for 12h.4. To the above reaction solution was added 100 mL of saturated NaHCO 3, extracted with 3 × 150 mL of ethyl acetate, and the organic phase was dried over anhydrous sodium sulfate.5. After removing the organic phase by rotary evaporation under reduced pressure, the product was purified by column chromatography on silica gel. The final product Boc-glycine-CBT was eluted with dichloromethane: methanol (10: 1-5: 1). |
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