Structure of 73841-32-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 73841-32-4 |
Formula : | C6H4INO2 |
M.W : | 249.01 |
SMILES Code : | O=C(O)C1=NC=CC=C1I |
MDL No. : | MFCD01928487 |
InChI Key : | NBPSOUHMLHTKID-UHFFFAOYSA-N |
Pubchem ID : | 11253692 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 43.91 |
TPSA ? Topological Polar Surface Area: Calculated from |
50.19 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.99 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.36 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.38 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.18 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.71 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.05 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.62 |
Solubility | 0.599 mg/ml ; 0.00241 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.02 |
Solubility | 2.4 mg/ml ; 0.00963 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.35 |
Solubility | 1.1 mg/ml ; 0.00443 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.85 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.73 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
66% | A solution of 2,2,6,6-tetramethylpiperidine (8.48 g, 60 mmol) in tetrahydrofuran (100 mL)Cooling to -78 deg C, N-butyllithium (2.5 mol / L, 16 mL, 40 mmol) was added dropwise, Slowly warmed to room temperature for 30 minutes. Cooling to -78 deg C, This was added dropwise to a suspension of pyridine-2-carboxylic acid (2.46 g, 20 mmol) in tetrahydrofuran, After completion of the dropwise addition, the reaction was allowed to proceed at room temperature for 30 minutes, Cooling to -30 deg C, A solution of iodine (15.23 g, 60 mmol) in tetrahydrofuran was added dropwise to the reaction flask, The mixture was stirred at room temperature for 1 hour, add water, Standing overnight Precipitation of solids, The target compound was filtered (3.3 g, yield 66percent). | |
41% | Description 1; 3-Iodo-2-pyridinecarboxylic acid (D1); To a stirred solution of 2,2,6,6-tetramethylpiperidine (20 ml, 0.122 mol) in dry THF (100 ml) at -78° C., under argon was added n-butyllithium (52 ml, 0.163 mol, 2.5M solution in hexanes) dropwise, followed 15 min later by a solution of 2-pyridinecarboxylic acid (5.0 g, 0.0407 mol) in dry THF (30 ml). After 10 min at -78° C., the reaction mixture was warmed to 0° C. for 30 min. and then transferred to a solution of iodine (30.9 g, 0.243 mol) in dry THF (70 ml) at 0° C., under argon. After 15 min at 0° C. the reaction mixture was warmed to 25° C. and stirred for 1 h. After this period water (80 ml) was added and the reaction mixture concentrated in vacuo. The residue was re-dissolved in water (100 ml) and washed with EtOAc (100 ml). The aqueous layer was separated, concentrated in vacuo and the resulting residue triturated with diethyl ether. The solid material was filtered and dried in vacuo before being re-dissolved in MeOH (200 ml). To this solution was added Amberlyte IR-120 ion-exchange resin (100 g) and the reaction mixture stirred at 25° C. for 2 h. After this period the resin was filtered off and the solvents concentrated in vacuo to afford the title compound (4.15 g, 41percent). deltaH (DMSO-d6, 250 MHz) 6.79 (1H, bs) 7.28 (1H, dd), 8.37 (1H, dd), 8.58 (1H, dd). MS (ES): C6H41NO2 requires 249. found (M-H+) 248. | |
41% | Description 1; 3-lodo-2-pyridinecarboxylic acid (D1);To a stirred solution of 2,2,6,6-tetramethylpiperidine (20ml, 0.122mol) in dry THF (100ml) at -78 °C, under argon was added /7-butyllithium (52ml, 0.163mol, 2.5M EPO <DP n="40"/>solution in hexanes) dropwise, followed 15min later by a solution of 2- pyridinecarboxylic acid (5.Og, 0.0407mol) in dry THF (30ml). After 10min at -78 0C, the reaction mixture was warmed to 00C for 30 min. and then transferred to a solution of iodine (30.9g, 0.243mol) in dry THF (70ml) at 00C, under argon. After 15min at O0C the reaction mixture was warmed to 25°C and stirred for 1h. After this period water (80ml) was added and the reaction mixture concentrated in vacuo. The residue was re-dissolved in water (100ml) and washed with EtOAc (100ml). The aqueous layer was separated, concentrated in vacuo and the resulting residue triturated with diethyl ether. The solid material was filtered and dried in vacuo before being re- dissolved in MeOH (200ml). To this solution was added Amberlyte IR-120 ion- exchange resin (100g) and the reaction mixture stirred at 25°C for 2h. After this period the resin was filtered off and the solvents concentrated in vacuo to afford the title compound (4.15g, 41percent). deltaH (DMSO-d6, 250MHz) 6.79 (1H, bs) 7.28 (1H, dd), 8.37 (1 H, dd), 8.58 (1H, dd). MS (ES): C6H4INO2 requires 249; found (M-H+) 248. |
Example 503-[4-Chloro-3-[[(2-tricyclo[3.3.1.13'7]dec-l-ylethyl)amino]carbonyl]phenyl]-2-pyridinecarboxylic acidCIa) 3-Iodo-2-pyridinecarboxylic acid, methyl esterButyllithium (32 mL, 2.5 M in hexanes) was added dropwise over 10 minutes to a solutionof 2,2,6,6-tetramethylpiperidine (10.2 mL) in tetrahydrofuran (100 mL) at-7 8 °C undernitrogen. The mixture was stirred at -78 °C for 15 minutes and then picolinic acid (2.4 g)was added portionwise over 10 minutes. After a further 10 minutes at -78 °C the mixturewas allowed to warm to 0 °C and stirred under nitrogen for 30 minutes. The reactionmixture was then added dropwise over 15 minutes to a solution of iodine (15 g) intetrahydrofuran (100 mL) at 0 °C. This was then allowed to warm to room temperature andstirred for 1 hour before water (20 mL) was added. The mixture was evaporated to drynessto leave a black oil. Dichloromethane (50 mL) was added and the mixture was cooled to 0°C. A^JV-Dimethylformamide (1 drop) and oxalyl chloride (4 mL) were added. The reactionwas allowed to warm to room temperature and stirred under nitrogen for 2 hours, thenevaporated to dryness. The residue was dissolved hi dichloromethane (20 mL) and thenmethanol (20 mL) was added. The mixture was then stirred for 10 minutes before beingevaporated to afford the sub-title compound as an oil (1.0 g) which was used in the nextstep without purification.MS: APCI(+ve) 264 (M+H4"). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Description 2; Methyl 3-iodo-2-pyridinecarboxylate (D2); A mixture of D1 (3.0 g, 0.012 mol) and c.H2SO4 (2 ml) in MeOH (100 ml) was heated at 65° C. for 18 h. After this period, solvents were evaporated in vacuo and the residue basified with solid NaHCO3. The residue was then extracted with EtOAc (3.x.100 ml). The organic layer was separated, dried (Na2SO4) and concentrated in vacuo to afford the title compound (2.2 g, 70percent). deltaH(CDCl3, 250 MHz) 4.01 (3H, s), 7.13 (1H, dd), 8.29 (1H, dd), 8.64 (1H, dd). MS (ES): C7H61NO2 requires 263. found 264 (MH+) | |
70% | Description 2; Methyl 3-iodo-2-pyridinecarboxylate (D2); A mixture of D1 (3.Og, 0.012mol) and CH2SO4 (2ml) in MeOH (100ml) was heated at65°C for 18 h. After this period, solvents were evaporated in vacuo and the residue basified with solid NaHCO3. The residue was then extracted with EtOAc (3x100ml). The organic layer was separated, dried (Na2SO4) and concentrated in vacuo to afford the title compound (2.2g, 70percent). deltaH (CDCI3, 250MHz) 4.01 (3H, s), 7.13 (1 H, dd), 8.29 (1H, dd), 8.64 (1H, dd). MS (ES): C7H6INO2 requires 263; found 264 (MH+) | |
Example 503-[4-Chloro-3-[[(2-tricyclo[3.3.1.13'7]dec-l-ylethyl)amino]carbonyl]phenyl]-2-pyridinecarboxylic acidCIa) 3-Iodo-2-pyridinecarboxylic acid, methyl esterButyllithium (32 mL, 2.5 M in hexanes) was added dropwise over 10 minutes to a solutionof 2,2,6,6-tetramethylpiperidine (10.2 mL) in tetrahydrofuran (100 mL) at-7 8 °C undernitrogen. The mixture was stirred at -78 °C for 15 minutes and then picolinic acid (2.4 g)was added portionwise over 10 minutes. After a further 10 minutes at -78 °C the mixturewas allowed to warm to 0 °C and stirred under nitrogen for 30 minutes. The reactionmixture was then added dropwise over 15 minutes to a solution of iodine (15 g) intetrahydrofuran (100 mL) at 0 °C. This was then allowed to warm to room temperature andstirred for 1 hour before water (20 mL) was added. The mixture was evaporated to drynessto leave a black oil. Dichloromethane (50 mL) was added and the mixture was cooled to 0°C. A^JV-Dimethylformamide (1 drop) and oxalyl chloride (4 mL) were added. The reactionwas allowed to warm to room temperature and stirred under nitrogen for 2 hours, thenevaporated to dryness. The residue was dissolved hi dichloromethane (20 mL) and thenmethanol (20 mL) was added. The mixture was then stirred for 10 minutes before beingevaporated to afford the sub-title compound as an oil (1.0 g) which was used in the nextstep without purification.MS: APCI(+ve) 264 (M+H4"). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
5.6% | With caesium carbonate; In toluene; at 110℃; | <strong>[73841-32-4]3-iodopyridine-2-carboxylic acid</strong> (3 g, 12 mmol) was suspended in toluene (100 mL) Cesium carbonate (11.7 g, 36 mmol) was added, 2,5-dichlorophenol (1.96 g, 12 mmol) and tetrafluoroacetonitrile hexafluoride (447 mg, 1.2 mmol) 110 ° C overnight. Vacuum concentration, Add water (100mL), Ethyl acetate extraction (200 mL x 2), Dried over anhydrous sodium sulfate, Concentrated in vacuo to give the title compound (215mg, 5.6percent yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With HATU; In dichloromethane; acetonitrile; at 20℃; for 12h; | A solution of <strong>[73841-32-4]3-iodopicolinic acid</strong> 2a (1.8 g, 7.23 mmol), (S)-l-tert-butyl 3-methyl piperazine-1,3- dicarboxylate (1.766 g, 7.23 mmol), HATU (3.02 g, 7.95 mmol), DIEA (5.05 mL, 28.9 mmol) in DCM (100 mL) / Acetonitrile (20 mL) was stirred at r.t. for 12 h. DCM (50 mL) and satd. H4Cl (100 mL) were added. The DCM layer was washed with brine, dried over Na2S04, filtered and concentrated. The reaction was purified by column chromatography and the product was eluted by EtOAc to yield (S)-l-tert-butyl 3-methyl 4-(3-iodopicolinoyl)piperazine-l,3-dicarboxylate 2b. |