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[ CAS No. 405939-79-9 ] {[proInfo.proName]}

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Chemical Structure| 405939-79-9
Chemical Structure| 405939-79-9
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Product Details of [ 405939-79-9 ]

CAS No. :405939-79-9 MDL No. :MFCD03426666
Formula : C6H4INO2 Boiling Point : -
Linear Structure Formula :- InChI Key :CEYJTEYGGAWURJ-UHFFFAOYSA-N
M.W : 249.01 Pubchem ID :818278
Synonyms :

Calculated chemistry of [ 405939-79-9 ]

Physicochemical Properties

Num. heavy atoms : 10
Num. arom. heavy atoms : 6
Fraction Csp3 : 0.0
Num. rotatable bonds : 1
Num. H-bond acceptors : 3.0
Num. H-bond donors : 1.0
Molar Refractivity : 43.91
TPSA : 50.19 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : Yes
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -6.85 cm/s

Lipophilicity

Log Po/w (iLOGP) : 1.1
Log Po/w (XLOGP3) : 1.36
Log Po/w (WLOGP) : 1.38
Log Po/w (MLOGP) : -0.18
Log Po/w (SILICOS-IT) : 1.71
Consensus Log Po/w : 1.07

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.56

Water Solubility

Log S (ESOL) : -2.62
Solubility : 0.599 mg/ml ; 0.00241 mol/l
Class : Soluble
Log S (Ali) : -2.02
Solubility : 2.4 mg/ml ; 0.00963 mol/l
Class : Soluble
Log S (SILICOS-IT) : -2.35
Solubility : 1.1 mg/ml ; 0.00443 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.53

Safety of [ 405939-79-9 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P280-P305+P351+P338 UN#:N/A
Hazard Statements:H302-H315-H319-H332-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 405939-79-9 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 405939-79-9 ]
  • Downstream synthetic route of [ 405939-79-9 ]

[ 405939-79-9 ] Synthesis Path-Upstream   1~6

  • 1
  • [ 405939-79-9 ]
  • [ 552331-00-7 ]
Reference: [1] Patent: WO2004/43940, 2004, A1,
  • 2
  • [ 24484-93-3 ]
  • [ 405939-79-9 ]
YieldReaction ConditionsOperation in experiment
89%
Stage #1: With hydrogen iodide; hypophosphorous acid In water at 85 - 107℃;
Stage #2: With sodium hydroxide In water at 20 - 95℃; for 1 h;
[00092] 4-lodopicolinic acid methyl ester (CYD-1-4). A mixture of 4-chloropicolinic acid methyl ester CYD-1-1 (4.8 g, 27.9 mmol), 57percent hydriodic acid (26.6 mL, 232.2 mmol) and 50percent) aqueous hypophosphorous acid (1.32 mL, 12.0 mmol) was stirred at 85°C for 2 h and then was stirred at 107°C overnight. The mixture was cooled to 95°C. At this temperature 8.4 mL of 10 N sodium hydroxide aqueous solution was added into the reaction mixture slowly. The mixture was cooled to room temperature and stirred for 1 h, and the yellow solid was precipitated. The precipitate was filtered, washed with cold water and dried under the vacuum overnight to give 4-iodopicolinic acid as a yellow solid (6.8 g, 89percent>). To a solution of 4-iodopicolinic acid (6.73 g, 27.0 mmol) in methanol (101 mL) was added concentrated sulfuric acid (508 μ), and the mixture was refluxed at 80°C for two days. The solvent was evaporated and the residue was taken up with the saturated sodium bicarbonate and extracted with ethyl acetate (three times). The organic layers were combined, washed with saturated brine, dried over anhydrous Na2S04 and evaporated. The residue was purified with silica gel column; eluting with 1 :3 ethyl acetate -hexane provided 4-iodopicolinic acid methyl ester (CYD-1-4) as a yellow solid (2.88 g, 40percent for two steps); mp 73-74°C; 1H NMR (600 MHz, CDCls) δ 8.50 (d, 1H, J = 1.2 Hz), 8.39 (d, 1H, J= 5.4 Hz), 7.87 (dd, 1H, J = 1.8 Hz and 4.8 Hz), 4.02 (s, 3H).
89%
Stage #1: at 85 - 107℃;
Stage #2: at 20 - 95℃; for 1 h;
A mixture of 4-chloropicolinic acid methyl ester CYD-1-1 (4.8 g, 27.9 mmol), 57percent hydriodic acid (26.6 mL, 232.2 mmol) and 50percent aqueous hypophosphorous acid (1.32 mL, 12.0 mmol) was stirred at 85° C. for 2 h and then was stirred at 107° C. overnight. The mixture was cooled to 95° C. At this temperature 8.4 mL of 10 N sodium hydroxide aqueous solution was added into the reaction mixture slowly. The mixture was cooled to room temperature and stirred for 1 h, and the yellow solid was precipitated. The precipitate was filtered, washed with cold water and dried under the vacuum overnight to give 4-iodopicolinic acid as a yellow solid (6.8 g, 89percent). To a solution of 4-iodopicolinic acid (6.73 g, 27.0 mmol) in methanol (101 mL) was added concentrated sulfuric acid (508 μL), and the mixture was refluxed at 80° C. for two days. The solvent was evaporated and the residue was taken up with the saturated sodium bicarbonate and extracted with ethyl acetate (three times). The organic layers were combined, washed with saturated brine, dried over anhydrous Na2SO4 and evaporated. The residue was purified with silica gel column; eluting with 1:3 ethyl acetate-hexane provided 4-iodopicolinic acid methyl ester (CYD-1-4) as a yellow solid (2.88 g, 40percent for two steps); mp 73-74° C.; 1H NMR (600 MHz, CDCl3) δ 8.50 (d, 1H, J=1.2 Hz), 8.39 (d, 1H, J=5.4 Hz), 7.87 (dd, 1H, J=1.8 Hz and 4.8 Hz), 4.02 (s, 3H).
66%
Stage #1: With hydrogen iodide; hypophosphorous acid In water at 85 - 107℃;
Stage #2: at 20 - 95℃; for 1.5 h;
A mixture of picolinic acid (Aldrich) (20 g, 162 mmol, [1] equiv) and sodium bromide (33.43 g, 325 mmol, 2 equiv) in thionyl chloride (81 mL) was refluxed for 5 h. The solvent was removed under vacuum. Absolute methanol (160 mL) was added and the mixture was stirred at rt for 30 minutes. The solvent was evaporated, and the residue was taken up in 5percent sodium bicarbonate and extracted with ethyl acetate (3x). The organic layers were combined and dried over [MGS04] and evaporated. The residue was purified by chromatography to give 4- chloropicolinic acid methyl ester as a white solid (19.9 g, 72percent) [: 1H] NMR (300 MHz, [CDC13)] 8 8.63 (d, J= 5.4, 1), 8.13 (d, J= 2.1, 1), 7.48 (dd, J= 2.0, 5.3, 1), 4.00 (s, 3). [[0217]] A mixture of 4-chloropicolinic acid methyl ester (2.4 g, 14.1 mmol), 57percent hydroiodic acid (13.3 mL) and 50percent aqueous hypophosphorous acid (0.66 mL) was stirred at 85 [°C] for 2 h and then was stirred at [107 °C] overnight. The mixture was cooled to 95 [°C.] At this temperature over 30 minutes 10 M sodium hydroxide aqueous solution (4.2 mL) was added, followed by the addition of water (15.2 mL). The mixture was cooled to rt and stirred at rt for [LH.] The precipitate was filtered, washed with cold water and dried under high vacuum overnight to give 4-iodopipecolinic acid 13a (3.5 g, [66percent) : 1H] NMR (300 MHz, DMSO d6) 8 8. [39] (d, [J=] 5.1, 1), [8. 35] (d, [J= 1.] 8,1), 8.07 (dd, [J= 1.] 7,5. 2, [1) ;] MS (ESPOS): 250.2 [M + H] [+.] [[0218]] To a mixture of 7-Me MTL HCl salt 2b [(RAPOS;=ME,] R2=Me) (200 mg, 0.69 mmol, [1] equiv) in dry DMF (1.8 mL) at [0 °C] was added triethylamine (0.50 mL, 3.61 mmol, 5.2 equiv), followed by the addition of BSTFA (0.28 mL, 1.04 mmol, 1.5 equiv). The reaction mixture was stirred at [0 °C] for 10 minutes, and then was stirred at rt for 50 minutes. To the reaction mixture was added the acid 13a (341 mg, 0.90 mmol, 1.3 equiv) and HATU (423 mg, 1.11 mmol, 1.6 equiv). The reaction mixture was stirred at rt for 3 h. The reaction mixture was evaporated to dryness, taken up in ethyl acetate, washed with water [(1] x), sat. [NAHC03] [(1] x) and brine. The organic layer was dried over [NA2S04] and evaporated to give a yellow residue which was dissolved in methanol (20 mL) to which was added dry Dowex resin (250 mg). The reaction mixture was stirred at rt for 1 h. The resin was removed by filtration and the crude product eluted with 2M ammonia in methanol. The methanolic eluent was evaporated, and the resulting residue was purified by chromatography to provide a white solid 13b (Rl=Me, R2= Me, [R3=H)] (250 mg, 75percent) [: LH NMR] (300 MHz, CD30D) 8 8.46 (d, [J= 1.] 8,1), 8.30 (d, J= 5.4, 1), 7.98 (dd, J= 1.8, 5.1, 1), 5.25 (d, J= 6.0, 1), 4.32-4. 23 (m, 2), 4.09 (dd, J= 5.7, 10.2, 1), 3.87 (d, J= 3.0, 1), 3.54 (dd, J= 3.3, 10.2, 1), 2.24-2. 15 (m, 1), 2.11 (s, 3), 0.99-0. 96 (m, 6); MS (ESPOS): [483.] 5 [M + [H] +] ; MS (ESNEG): 481.4 [[M-H]-.] [0219] To a dry flask was added 13b [(RL=ME,] R2= Me, R3=H) (133.9 mg, [0.] 28 mmol, 1 equiv), triphenylphosphine (46.7 mg, 0.18 mmol, 0.64 equiv), copper (I) iodide [(33.] 9 mg, 0.18 mmol, 0.64 equiv), palladium acetate (20 mg, 0.09 mmol, 0.32 equiv) and triethylamine (1.6 mL). The mixture was deaerated with nitrogen, followed by addition of 3-prop-2-ynyl- cyclopentane (120 mg, [1.] 11 mmol, 4 equiv). The mixture was stirred at 50 oC overnight. The solvent was removed under vacuum to give a dark residue. The residue was purified by chromatography to give 13c (Rl=Me, R9'= 3-cyclopentyl-prop-1-ynyl, R2= Me, R3=H) as a yellow solid (106 mg, 83percent): 1H NMR (300 [MHZ, CD30D) 6] 8.55 (d, J= 4.8, 1), 7.98 (s, 1), 7.47 [(DD,] [J=] 1.7, 5.0, 1), 5.26 (d, [J=] 5.4, [1),] 4. [33-4.] 22 (m, 2), 4.10 (dd, [J=] 5.5, 10.4, 1), 3.86 (d, J= 3.3, 1), 3.55 (dd, J= 3.3, 10.5, 1), 2.49 (d, J= 6.9, 2), 2.26-2. 12 (m, 2), 2.11 (s, 3), 1.93- 1.82 (m, 2), 1.73-1. 55 (m, 4), 1.43-1. 31 (m, 2), 1.00-0. 96 (m, 6); MS (ESPOS): 463.6 [M [+ H] +] ; MS (ESNEG): 461.5 [M-H]-.
Reference: [1] Patent: WO2013/86266, 2013, A2, . Location in patent: Paragraph 00092
[2] Patent: US9533973, 2017, B2, . Location in patent: Page/Page column 34-35
[3] Patent: WO2004/16632, 2004, A2, . Location in patent: Page 57-58
  • 3
  • [ 24484-93-3 ]
  • [ 405939-79-9 ]
Reference: [1] Patent: US2005/43248, 2005, A1,
[2] Patent: US2005/215488, 2005, A1,
  • 4
  • [ 98-98-6 ]
  • [ 405939-79-9 ]
Reference: [1] Patent: WO2013/86266, 2013, A2,
[2] Patent: US9533973, 2017, B2,
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  • [ 5470-22-4 ]
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Reference: [1] Patent: WO2013/86266, 2013, A2,
  • 6
  • [ 67-56-1 ]
  • [ 405939-79-9 ]
  • [ 380381-28-2 ]
YieldReaction ConditionsOperation in experiment
86% Heating / reflux To a solution [OF 13A] prepared in general method Q (5 g, 13. 26 mmol) in methanol (500 mL) was added a few drops of [CONC.] sulfuric acid. The reaction mixture was refluxed overnight. The solvent was evaporated and the residue was purified by chromatography to give 4-iodopipecolinic acid methyl ester 14a as a yellow solid (3.0 g, [86percent}] [: LH NMR] (300 MHz, CDC13) 8 8.49 (d, J= 1.5, 1), 8.37 (d, J= 5.4, 1), 7.85 (dd, J= 1.6, 5.2, 1), 4.00 (s, 3); MS (ESPOS): 264.3 [M + H] +. [[0221]] To a dry flask were added 14a [(1] g, 3.8 mmol, [1] equiv), triphenylphosphine (79.7 mg, 0.3 mmol, 0.08 equiv), copper [(1)] iodide (57.9 mg, 0.3 mmol, 0.08 equiv), palladium acetate (34.1 mg, 0.15 mmol, 0.04 equiv) and triethylamine (14 mL). The mixture was deaerated with nitrogen, followed by addition [OF 3-BUTYN-1-OL] (0.53 g, 7.6 mmol, 2 equiv). The mixture was stirred at rt for 3 h. The solvent was removed under vacuum to give a dark residue. The residue was purified by chromatography to give 14b [(R9APOS;= 3-HYDOXY-BUT-1-YNYL)] as a yellow oil (0.78 g, 100percent) [:APOS;H NMR (3 00] MHz, [CDC13)] [8] 8.66-8. 63 (m, 1), 8.09-8. 08 (m, 1), 7.43-7. 40 (m, 1), 3.99 (s, 3), 3.88-3. 82 (m, 2), 2.72 (t, [J=] 6.3, 2). MS (ESPOS): 206.4 [M + [H] +.] [[0222]] To a solution of the above 14b [(R9APOS;= 3-HYDOXY-BUT-1-YNYL)] (0.78 g, 3.8 mmol) in methanol (40 mL) was added 10 percent palladium on carbon (0.4 g). The flask containing the reaction mixture was purged and charged with hydrogen (1 atm) and stirred at rt overnight. The palladium was removed by filtration and the filtrate was concentrated to give 14c [(R9=3-] hydroxybutyl) as an oil (0.77 g, 97percent) [: LH NMR (300] MHz, [CDCL3)] [8] 8.60 (d, [J=] 4.5, 1), 7.97 (d, [J= 1.] 2,1), 7.29 (dd, [J=] 1.6, 5.0, 1), 3.99 (s, 3), 3.67 (t, [J=] 6.3, 2), 2.72 (t, [J=] 7.7, 2), 1. [81-] 1.69 (m, 2), 1.62-1. 54 (m, 2); MS (ESPOS): 210.4 [M + [H] +.]
40% at 80℃; for 48 h; [00092] 4-lodopicolinic acid methyl ester (CYD-1-4). A mixture of 4-chloropicolinic acid methyl ester CYD-1-1 (4.8 g, 27.9 mmol), 57percent hydriodic acid (26.6 mL, 232.2 mmol) and 50percent) aqueous hypophosphorous acid (1.32 mL, 12.0 mmol) was stirred at 85°C for 2 h and then was stirred at 107°C overnight. The mixture was cooled to 95°C. At this temperature 8.4 mL of 10 N sodium hydroxide aqueous solution was added into the reaction mixture slowly. The mixture was cooled to room temperature and stirred for 1 h, and the yellow solid was precipitated. The precipitate was filtered, washed with cold water and dried under the vacuum overnight to give 4-iodopicolinic acid as a yellow solid (6.8 g, 89percent>). To a solution of 4-iodopicolinic acid (6.73 g, 27.0 mmol) in methanol (101 mL) was added concentrated sulfuric acid (508 μ), and the mixture was refluxed at 80°C for two days. The solvent was evaporated and the residue was taken up with the saturated sodium bicarbonate and extracted with ethyl acetate (three times). The organic layers were combined, washed with saturated brine, dried over anhydrous Na2S04 and evaporated. The residue was purified with silica gel column; eluting with 1 :3 ethyl acetate -hexane provided 4-iodopicolinic acid methyl ester (CYD-1-4) as a yellow solid (2.88 g, 40percent for two steps); mp 73-74°C; 1H NMR (600 MHz, CDCls) δ 8.50 (d, 1H, J = 1.2 Hz), 8.39 (d, 1H, J= 5.4 Hz), 7.87 (dd, 1H, J = 1.8 Hz and 4.8 Hz), 4.02 (s, 3H).
2.88 g at 80℃; for 48 h; A mixture of 4-chloropicolinic acid methyl ester CYD-1-1 (4.8 g, 27.9 mmol), 57percent hydriodic acid (26.6 mL, 232.2 mmol) and 50percent aqueous hypophosphorous acid (1.32 mL, 12.0 mmol) was stirred at 85° C. for 2 h and then was stirred at 107° C. overnight. The mixture was cooled to 95° C. At this temperature 8.4 mL of 10 N sodium hydroxide aqueous solution was added into the reaction mixture slowly. The mixture was cooled to room temperature and stirred for 1 h, and the yellow solid was precipitated. The precipitate was filtered, washed with cold water and dried under the vacuum overnight to give 4-iodopicolinic acid as a yellow solid (6.8 g, 89percent). To a solution of 4-iodopicolinic acid (6.73 g, 27.0 mmol) in methanol (101 mL) was added concentrated sulfuric acid (508 μL), and the mixture was refluxed at 80° C. for two days. The solvent was evaporated and the residue was taken up with the saturated sodium bicarbonate and extracted with ethyl acetate (three times). The organic layers were combined, washed with saturated brine, dried over anhydrous Na2SO4 and evaporated. The residue was purified with silica gel column; eluting with 1:3 ethyl acetate-hexane provided 4-iodopicolinic acid methyl ester (CYD-1-4) as a yellow solid (2.88 g, 40percent for two steps); mp 73-74° C.; 1H NMR (600 MHz, CDCl3) δ 8.50 (d, 1H, J=1.2 Hz), 8.39 (d, 1H, J=5.4 Hz), 7.87 (dd, 1H, J=1.8 Hz and 4.8 Hz), 4.02 (s, 3H).
Reference: [1] Patent: WO2004/16632, 2004, A2, . Location in patent: Page 58-59
[2] Patent: WO2013/86266, 2013, A2, . Location in patent: Paragraph 00092
[3] Patent: US9533973, 2017, B2, . Location in patent: Page/Page column 34-35
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