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Chemical Structure| 67808-64-4 Chemical Structure| 67808-64-4
Chemical Structure| 67808-64-4
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Product Details of [ 67808-64-4 ]

CAS No. :67808-64-4
Formula : C7H6O3S
M.W : 170.19
SMILES Code : C(=O)C1=CC=C(S1)C(=O)OC
MDL No. :MFCD01859942
InChI Key :APNKWEPRZUSZCJ-UHFFFAOYSA-N
Pubchem ID :818924

Safety of [ 67808-64-4 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H332-H335
Precautionary Statements:P261-P280-P305+P351+P338

Calculated chemistry of [ 67808-64-4 ] Show Less

Physicochemical Properties

Num. heavy atoms 11
Num. arom. heavy atoms 5
Fraction Csp3 0.14
Num. rotatable bonds 3
Num. H-bond acceptors 3.0
Num. H-bond donors 0.0
Molar Refractivity 40.99
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

71.61 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.57
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

1.58
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

1.35
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

0.28
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.51
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

1.46

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.03
Solubility 1.59 mg/ml ; 0.00936 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.69
Solubility 0.344 mg/ml ; 0.00202 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-1.69
Solubility 3.51 mg/ml ; 0.0206 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.22 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.32

Application In Synthesis of [ 67808-64-4 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 67808-64-4 ]

[ 67808-64-4 ] Synthesis Path-Downstream   1~27

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YieldReaction ConditionsOperation in experiment
60% With pyridine; hydroxylamine hydrochloride; In ethanol; for 3h;Reflux; Hydroxylamine hydrochloride (420 mg, 6.1 mmol) and pyridine (0.5 mL) were added to a solution of <strong>[67808-64-4]methyl 5-formylthiophene-2-carboxylate</strong> (690 mg, 4.1 mmol) in EtOH (25 mL). The reaction mixture was refluxed for 3 h, cooled to room temperature and concentrated under reduced pressure. The residue was dissolved in diethyl ether, the organic layer was washed with water and brine, and dried over anhydrous sodium sulfate. The solvent was removed under reduced pressure to get product methyl 5-((hydroxyimino)methyl)thiophene-2-carboxylate (440 mg, yield 60percent), which was carried through without any further purification. 1H NMR (400 MHz, DMSO-d6) delta 12.5 (s, 1 H), 7.98 (s, 1 H), 7.78 (d, J = 4.1 Hz, 1H), 7.51 (d, J = 4.1 Hz, 1 H), 3.82 (s, 3H). MS (ESI) m/z: Calculated for C7H7NO3S: 185.01; found: 186.0 (M+H)+.
In ethanol; EXAMPLE 19 Methyl 5-formyl-2-thiophenecarboxylate oxime A solution of <strong>[67808-64-4]methyl 5-formyl-2-thiophenecarboxylate</strong>, prepared according to Example 10, (6.26 g, 36.78 mmoles), hydroxylamine hydrochloride (3.07 g, 44.14 mmoles) and pyridine (3.49 g, 44.14 mmoles) in 200 ml of ethanol was refluxed for 2 hours. The ethanol was removed in vacuo, the residue dissolved in ether and washed with water. The organic layer was dried (magnesium sulfate) and evaporated to a yellow solid. Trituration with a small amount of ether furnished the title compound as a white solid (4.93 g, 72percent), m.p. 164°-7° C. Oxime Z:E ratio:(82:18). Analysis: Calculated for C7 H7 NO3 S: C, 45.39; H, 3.81; N, 7.56percent. Found: C, 45.41; H, 3.69; N,7.48percent. EIMS (m/z): 185 (M+, 97percent), 154 (M+ --CH3 O, base); 1 H-NMR (DMSO-d6) delta, Z isomer:12.52 (1H, br s), 7.99 (1H, s), 7.77 (1H, d, J=4.0 Hz), 7.50 (1H, d, J=4.0 Hz), 3.83 (3H, s); E isomer:11.66 (1H, br s), 8.38 (1H, s), 7.74 (1H, d, J=4.0 Hz), 7.34 (1H, d, J=4.0 Hz), 3.82 (3H, s); ir (potassium bromide): 3400, 1649, 918 cm-1.
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YieldReaction ConditionsOperation in experiment
62% With sodium carbonate; In N,N-dimethyl-formamide; at 25℃; for 20h; Step 1. Methyl 5-formyl-2-thiophenecarboxylateA mixture of <strong>[4565-31-5]5-formyl-2-thiophene carboxylic acid</strong> (2.34 g, 15 mmol) and sodium carbonate (5.57 g, 52.5 mmol) in DMF (25 ml) at 25 0C was treated with iodomethane (1.15 ml, 18 mmol) and the mixture was stirred for 20 h before being quenched with the addition of water and saturated aqueous NH4Cl. The resulting solid precipitate was collected by filtration to give methyl 5-formyl-2- thiophenecarboxylate as a solid. The filtrate was extracted with EtOAc (3 x 30 ml) and the combined organic extracts were washed with water and brine, dried (Na2SO4), concentrated under reduced pressure, and subjected to flash chromatography to give solid material that was combined with the solid collected by precipitation to give methyl 5-formyl-2-thiophenecarboxylate as a white solid (1.60 g, 62percent): ESI-MS (m/z): 171.2 (M+H+).
With sodium carbonate; In N,N-dimethyl-formamide; EXAMPLE 10 Methyl 5-Formyl-2-thiophenecarboxylate The title compound has been described by Gronowitz, S., et al., Arkiv. for Kemi. 21:265 (1963), and was prepared according to the following procedure. Methyliodide (4.36 g, 30.74 mmoles) was added to a stirred suspension of <strong>[4565-31-5]5-formyl-2-thiophenecarboxylic acid</strong> (prepared according to Carpenter, A. J., et al., Tetrahedron 41:3808 (1985)) (4.00 g, 25.61 mmoles) and sodium carbonate (9.50 g, 89.65 mmoles) in 75 ml of N,N-dimethylformamide. After stirring overnight at room temperature the mixture was poured into water (350 ml), saturated with solid sodium chloride and extracted with ethyl acetate. The combined extracts were washed with brine, dried (magnesium sulfate) and concentrated in vacuo to a gray solid (3.83 g, 88percent), m.p. 85°-87° C. EIMS (m/z): 170 (M+, 95percent), 139 (M+ --CH3 O, base), 111 (M+ --CH3 O2 C, 64percent); 1 H-NMR (DMSO-d6) delta, 9.94 (1 H, s), 7.81 (1H, d, J=3.9Hz), 7.71 (1H, d, J=3.9 Hz), 3.91 (3H, s).
With sodium carbonate; In N,N-dimethyl-formamide; at 20℃; for 11h; Reference Example 7 methyl 5-formylthiophene-2-carboxylate 5-formylthiophene-2-carboxylic acid (3.13 g, manufactured by Tokyo Chemical Industry Co.) was dissolved in N,N-dimethylformamide (100 mL), and sodium carbonate (8.64 g, manufactured by Wako Pure Chemical Industries, Inc.) and iodomethane (2.49 mL, manufactured by Tokyo Chemical Industry Co.) were sequentially added at room temperature followed by stirring for 11 hours. Insoluble substances were removed from the reaction solution by filtration. Water (200 mL) was added to the filtrate, and the mixed solution was extracted with ethyl acetate. The extract solution was washed with saturated brine and was concentrated after drying over anhydrous magnesium sulfate to obtain the titled compound (3.26 g).
With sodium carbonate; In DMF (N,N-dimethyl-formamide); at 20℃; for 20h; A mixture of 4.5 g (29 mmol) of <strong>[4565-31-5]5-formyl-2-thiophene carboxylic acid</strong> and 12.6 g (102 mmol, 3.5 eqiv. ) of Na2C03 in 50 mL of DMF was treated with 2.2 mL of iodomethane (35 mmol, 1.2 eqiv. ) at room temperature for 20 h. The mixture was quenched with H20 with some addition of sat. NH4Cl sol. 5-Formyl-thiophene-2-carboxylic acid methyl ester formed as a precipitate and was collected by filtration (quantitative yield), used directly for next step. A mixture of 170 mg (1 mmol) of <strong>[4565-31-5]5-formyl-thiophene-2-carboxylic acid</strong> methyl ester, 197 mg (lmmol) of tosylmethyl isocyanide and 138 mg (lmmol) of K2CO3 in MeOH was refluxed for 0.5 hr. The solvent was evaporated under reduced pressure. The resulting residue was poured into ice-water, and extracted with EtOAc. The extract was washed with saturated aquaous NH4Cl, water, brine and dried over MgS04. The organic solvent was evaporated under reduced pressure and the residue was purified by combiflash to yield 170 mg of 5-oxazol-5-yl-thiophene-2-carboxylic acid methyl ester. Yield 81percent. The above ester (170 mg) was dissolved in 9 mL of THF, 3 mL of MeOH and 3 mL of IN OH solution and stirred overnight. The organic solvent was removed. Acetic acid was added to pH-4-5 and a light yellow precipitate formed. The suspension was diluted with water and the precipitate collected by filtration to yield 105 mg of the title compound. Yield 66percent.

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YieldReaction ConditionsOperation in experiment
With phthalic anhydride; hydroxylamine hydrochloride; triethylamine; In acetonitrile; at 20 - 90℃; for 48h; Reference Example 8 methyl 5-cyanothiophene-2-carboxylate Hydroxyamine hydrochloride (1.44 g, manufactured by Wako Pure Chemical Co.) was suspended in acetonitrile (80 mL), and triethylamine (2.88 mL, manufactured by Wako Pure Chemical Co.), an acetonitrile solution (100 mL) of the compound (2.93 g) obtained in Reference Example 7 and phthalic anhydride (2.82 g, manufactured by Aldrich Co.) were sequentially added at room temperature, and the solution was stirred at 90° C. for 48 hours in nitrogen atmosphere. After concentrating the reaction solution, ethyl acetate was added to the residue obtained, and the ethyl acetate solution was washed with saturated aqueous sodium hydrogen carbonate solution followed by concentration after drying over anhydrous magnesium sulfate. The residue obtained was purified by column chromatography (hexane/ethyl acetate=6/1) to obtain the titled compound (2.48 g)
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Historical Records

Technical Information

Categories

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[ 67808-64-4 ]

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