Structure of 676273-39-5
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CAS No. : | 676273-39-5 |
Formula : | C16H11IN2O2S |
M.W : | 422.24 |
SMILES Code : | N#CC1=CC2=C(N(S(=O)(C3=CC=C(C)C=C3)=O)C=C2I)C=C1 |
MDL No. : | MFCD13177481 |
InChI Key : | IUOBIBLYALVHRN-UHFFFAOYSA-N |
Pubchem ID : | 21955913 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 22 |
Num. arom. heavy atoms | 15 |
Fraction Csp3 | 0.06 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 93.41 |
TPSA ? Topological Polar Surface Area: Calculated from |
71.24 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.8 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.96 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
4.74 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.59 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.28 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.68 |
Log S (ESOL):? ESOL: Topological method implemented from |
-5.33 |
Solubility | 0.002 mg/ml ; 0.00000473 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (Ali)? Ali: Topological method implemented from |
-5.16 |
Solubility | 0.00294 mg/ml ; 0.00000697 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-6.23 |
Solubility | 0.000251 mg/ml ; 0.000000594 mol/l |
Class? Solubility class: Log S scale |
Poorly soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
Yes |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.06 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<2.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.96 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95.5% | Preparation of compound 69b: 3-iodo-l-tosyl-l/7-indole-5-carbonitrileTo a solution of 3-iodo-l//-indole-5-carbonitrile (2 g, 7.40 mmol) in DMF (20 mL) was added 60% NaH (538 mg, 22.38 mmol) portion wise at 0 C and the reaction was stirred for 10 min RT. To the above mixture at 0 C, p-TsCl (2.2 g, 11.19 mmol) solution in DMF (4 mL) was added and stirred for further 2 h at RT. The reaction was quenched with ice cold H20 (20 mL). The resulting suspension was filtered and the solid was washed with H20 (10 mL) and dried. The crude was purified with silica gel chromatography (eluent: 20% EtOAc in petroleum ether) to afford 3-iodo-l-tosyl-l//-indole-5-carbonitrile (3.0 g, 95.5%) as an off brown solid. .H NMR (400MHz, DMSO-d6): delta 8.30 (s, 1H), 8.13 (d, J=8.8Hz, 1H), 7.98 (d, J=8.4Hz, 2H), 7.87-7.81 (m, 2H), 7.43 (d, J=8.0Hz, 2H), 2.32 (s, 3H). | |
95% | Compound 14 (22 g) was taken in dry THF (200 ml) and cooled to 0C and added NaH portion wise under stirring. After 30 minutes, tosyl chloride was added portion wise and the reaction mixture was stirred at RT for 3 hr and reaction was monitored by TLC. Reaction was quenched with saturated ammonium chloride solution and diluted with ethyl acetate. Aqueous layer was extracted with ethyl acetate and the combined organic layer was again washed with water and brine. Organic layer was dried over sodium sulphate and concentrated under vacuum. Ethyl ac- etate was evaporated to minimum quantity and was diluted with heptane and stirred for 1hr. A solid was obtained which was filtered and dried under vacuum.33 g of the pure solid compound 15 was obtained. 1H NMR (300 MHz, DMSO-d6) delta 8.31 (s, 1H), 8.13 (d, J = 8.6 Hz, 1H), 7.99 (d, J = 8.4 Hz, 2H), 7.91- 7.78 (m, 2H), 7.44 (d, J = 8.2 Hz, 2H), 2.34 (s, 3H). | |
91% | With N-benzyl-N,N,N-triethylammonium chloride; sodium hydroxide; In dichloromethane; at 20℃;Inert atmosphere; | Example 2 Synthesis of 3-iodo-1-tosyl-1H-indole-5-carbonitrile (V) [0062] 3-iodo-1H-indole-5-carbonitrile (V), obtained as described in Example 1 (8.7 g, 32.5 mmol), NaOH (2.1 g, 52.5 mmol), triethylbenzylammonium chloride (0.7 g, 3.1 mmol) and tosyl chloride (6.7 g, 35.1 mmol) are suspended in CH2Cl2 (260 mL) under inert atmosphere, and the reaction mixture is maintained under stirring at ambient temperature overnight. The mixture is treated with water and the phases are separated. The organic phase is further washed with water and a saturated solution of NaCl, then dried on Na2SO4, filtered and concentrated at low pressure. Product (V) is thus obtained as a solid (12.5 g) with a yield of 91%. [0063] 1H-NMR (400 MHz, CDCl3), delta: 8.02 (1H, d, J=8.4 Hz); 7.78-7.54 (3H, m); 7.69 (1H, s); 7.58 (1H, d, J=8.4 Hz); 7.26 (2H; d, J=8.0 Hz); 2.34 (3H, s). |
With N-ethyl-N,N-diisopropylamine; In acetonitrile; for 1h; | 5-cyanoindole (4.0 g, 28.1 mMol) was dissolved in DMF (20 mL) and potassium hydroxide (4.74 g, 84.4 mMol) was added. The reaction was cooled in a water bath at 10 C. and iodine (7.12 g, 28.1 mMol) was added. After stirring for 30 min the reaction was poured into water (100 mL) with sodium thiosulfate (2 g). The resulting solid 5-cyano-3-iodo-lindole was collected by filtration and recrystallized from ethyl acetate and hexanes.The crystals were dissolved in acetonitrile (60 mL) and N,N-diisopropylethylamine (5.64 mL, 32.3 mMol) and solid p-toluenesulfonyl chloride (6.17 g, 32.3 mMol) was added. After stirring for 1 h, the reaction was poured into water (100 mL) and the resulting solids were collected. The material was recrystallized from hot ethyl acetate/hexanes to provide the product as white needles (7.92 g, 67%): 1H NMR (400 MHz, CDCl3) delta 8.06 (1H, d, J=9.2 Hz), 7.79 (3H, m), 7.73 (1H, d, J=1.5 Hz), 7.61 (1H, dd, J=8.6, 1.5 Hz), 7.29 (2H, d, J=8.5 Hz), 2.38 (3H, s); MS m/e 454.9 (M+Na). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | palladium diacetate; triphenylphosphine; In DMF (N,N-dimethyl-formamide); at 60℃; for 0.666667h; | <strong>[676273-39-5]3-Iodo-1-(toluene-4-sulfonyl)-1H-indole-5-carbonitrile</strong> (5.0 g, 11.8 mMol) was added to a solution of bis(tributyltin) (6.27 mL, 12.4 mMol) in DMF (50 mL). Triphenyl phosphine (310 mg, 0.10 mMol) and palladium(II)acetate (133 mg, 0.59 mMol) were added and the reaction was heated to 60 C. for 40 min. The reaction was cooled in a water bath, then poured into brine (500 mL), and extracted with ethyl acetate (3×50 mL). The organic phase was dried with magnesium sulfate and the solvent was removed in vacuo. The reaction was purified by chromatography on silica gel with hexanes to remove tin byproducts followed by elution with ethyl acetate/hexanes (8%) to give the product as an off-white solid (5.67 g, 82%). 1H NMR (400 MHz, CDCl3) delta 8.02 (1H, d, J=8.6 Hz), 7.75 (3H, m), 7.52 (1H, dd, J=8.6, 1.5 Hz), 7.49 (1H, s), 7.24 (2H, m), 2.35 (3H, s), 1.05-1.82 (18H, m), 0.89 (9H, m); MS m/e 587.3 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
63% | palladium diacetate; In N,N-dimethyl-formamide; at 60 - 90℃; for 5 - 16h; | Example 44 Preparation of QR-0311[00400] Compound QR-031 1 was prepared by reactions depicted in Scheme 50 below.[00401] The following General Procedure H was used. <n="125"/>General Procedure H[00402] Arylbromide or aryliodide (1 mmol). boric acid ( 1.2 mmol) andPd(OAc)2 (0.05 mmol) in DMF (5 niL) were stirred under argon at 60-90 0C for 5-16 h. The mixture was then cooled to room temperature, ethyl acetate (50 mL) was added and the mixture washed with brine 3 times (50 mL). The organic layer wasdried with MgSO4 and concentrated. The residue was purified by flash columnchromatography.100403] General Procedure H was used to yield 259 (63% yield). 1H NMR(CDCl3): 2.38 (s, 3H). 7.30 (d, 2H. J=8.4). 7.37-7.41 (m, 2H), 7.55 (s, I H), 7.64 (d.1 H. J=8.6), 7.82-8-7.86 (m, 4H), 7.96 (s. 1 H), 8.14 (d. 1 H, .1=8.6). 8.31 (s, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With potassium penicillin V; sodium thiosulfate; In N,N-dimethyl-formamide; | Example 1 Synthesis of 3-iodo-1H-indole-5-carbonitrile (V) 1H-indole-5-carbonitrile (5 g, 35.2 mmol), KOH (7.90 g, 141 mmol) and I2 (8.90 g, 35.2 mmol) are suspended in 25 mL of DMF under inert atmosphere. The reaction is maintained under stirring in the dark for 30 min. at 10C, and then treated with an 0.1M solution of Na2S2O3 (150 mL). The resulting suspension is maintained under stirring for 30 min, then filtered, and the resulting solid is washed with water and dried at 50C under vacuum to constant weight. Product (V) (9.0 g) is obtained as a white solid with a yield of 95%. 1H-NMR (400 MHz, CDCl3), delta: 8.78 (1H, bs); 7.80 (1H, s); 7.46-7.40 (3H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88.7% | With hydroxylamine hydrochloride; triethylamine; In ethanol; at 20℃; for 48h; | Preparation of compound 69c: N'-hydroxy-3-iodo-l-tosyl-l/7-indole-5- carboximidamideTo a suspension of 3-iodo-l-tosyl-l//-indole-5-carbonitrile (1 g, 2.37 mmol) in EtOH (10 mL) was added Et3N (1.65 mL, 11.87 mmol) followed by NH2OH.HCl (410 mg, 5.93 mmol) and the reaction was stirred for 48 h at RT. The solvent was removed in vacuo and the residue was treated with H20 (10 mL) and extracted with EtOAc (25 mL). The aqueous layer was extracted with EtOAc (25 mL). The combined organic layers were dried over anhydrous Na2S04, filtered and concentrated. The residue was further triturated with n-pentane to give N'-hydroxy-3-iodo-l-tosyl-l//-indole-5- carboximidamide (950 mg, 88.7%o) as an off brown solid. MS (ESI, pos. ion) m/z: 455.8; .H NMR (400MHz, CDC13): delta 7.99 (d, J=8.8Hz, 1H), 7.84-7.73 (m, 4H), 7.68 (d, J=8.4Hz, 1H), 7.63-7.61 (m, 1H), 7.31-7.24 (m, 1H), 4.92 (brs, 2H), 3.14-3.09 (m, 1H), 2.36 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With copper(l) iodide; triethylamine; triphenylphosphine; palladium dichloride; In N,N-dimethyl-formamide; at 20 - 30℃;Inert atmosphere; | Example 3 Synthesis of 3-(4-hydroxybut-1-inyl)-1-tosyl-1H-indole-5-carbonitrile (IV) <strong>[676273-39-5]3-iodo-1-tosyl-1H-indole-5-carbonitrile</strong> (V) (12.5 g, 28.3 mmol), PdCl2 (150 mg, 0.85 mmol), PPh3 (668 mg, 2.55 mmol) and CuI (162 mg, 0.85 mmol) are suspended in a mixture of triethylamine (65 mL) and DMF (60 mL) under inert atmosphere. The mixture is heated to the temperature of 30 C., then treated with a solution (10 mL) obtained by dissolving 3-butyn-1-ol (2.7 mL, 30.0 mmol) in DMF added by slow dripping. At the end of the addition the reaction mixture is left to stand at ambient temperature and maintained under stirring overnight. The mixture is then diluted with ethyl acetate (200 mL) and treated with a solution of 1M HCl until markedly acid. The phases are separated and the organic phase is washed sequentially with a saturated solution of NaHCO3 with the addition of a 33% solution of NH4OH, an 0.1M solution of Na2S2O3 and a saturated solution of NaCl. The organic phase is dried on Na2SO4, filtered, and concentrated at low pressure. Crude product (IV) is obtained as a solid (11 g), which is not purified but used "as is" in the subsequent reaction.A portion of the crude product is purified by flash chromatography (petroleum ether/AcOEt 50/50) to obtain chemically pure product ( IV) as a white solid. [0065] 1H-NMR (400 MHz, CDCl3), delta: 7.97 (1H, d, J=8.4 Hz); 7.89 (1H, s); 7.71-7.68 (3H, m); 7.50 (1H, d, J=8.8 Hz); 7.20 (1H, d, J=8.4 Hz); 3.78 (2H, m); 3.65 (1H, bs); 2.67 (2H, t, J=6.4 Hz); 2.29 (3H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34.7% | With bis-triphenylphosphine-palladium(II) chloride; sodium carbonate; In butan-1-ol; at 110℃; for 2h;Inert atmosphere; | Compound 15 (0.682 g), [2-(trifluoromethyl)-3-thienyl] boronic acid (0.38 g) and 2N solution of Na2CO3 (0.514 g, 2.4ml) were taken in n-Butanol (5ml) in a RB flask. Resulting mixture was de- gassed for 10 min. To this, was added PdCl2(PPh3)2 (0.057 g) and again degassed for 5 min. Resulting reaction mixture was stirred and heated at 110C for 2 hrs under nitrogen atmos- phere. Reaction completion was monitored by TLC. After completion of reaction it was cooled to RT. Filtered the reaction through celite bed and washed with ethyl acetate. Filtrate was washed with water and brine. Organic layer was dried over Na2SO4 and evaporated completely. Crude compound was purified by flash column chromatography. Pure compound was eluted with 10- 25% ethyl acetate in heptane. Evaporated solvent under vacuum. It was concentrated under vacuum to afford 0.25 g (34.70%) of the desired product 18. 1H NMR (300 MHz, DMSO-d6) delta 8.20 (d, J = 8.7 Hz, 1H), 8.11 (d, J = 4.9 Hz, 2H), 8.05- 7.95 (m, 3H), 7.84 (dd, J = 8.7, 1.4 Hz, 1H), 7.51 (dd, J = 5.1, 1.4 Hz, 1H), 7.44 (d, J = 8.2 Hz, 2H), 2.34 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With palladium bis[bis(diphenylphosphino)ferrocene] dichloride; potassium carbonate; In 1,4-dioxane; water; at 110℃; for 2h;Inert atmosphere; | Compound 15 (10 g), Thiophene boronic acid and K2CO3 were taken in Dioxane (120 ml): Wa- ter(15ml) mixture in a two neck RB flask equipped with Nitrogen balloon and reflux condenser. Reaction mass was degassed for 20 min. Palladium catalyst was added and reaction mass was again degassed for 3 min. Reaction mixture was refluxed at 110C for 2 hrs under Nitrogen. Re- action progress was monitor by TLC. After completion of the reaction, the mixture was filtered through a bed of celite. Filtrate was diluted with ethyl acetate. Ethyl acetate layer was washed with water and brine and concentrated. Crude material was taken in 80 ml methanol and stirred for 45 min at RT. Solid obtained is filtered and wash with cold methanol to get 8.4 g white solid product. (0863) 1H NMR (300 MHz, DMSO-d6) delta 8.50 (s, 1H), 8.40 (s, 1H), 8.22- 8.08 (m, 2H), 7.98 (d, J = 8.3 Hz, 2H), 7.82 (d, J = 8.7 Hz, 1H), 7.70 (d, J = 1.8 Hz, 2H), 7.41 (d, J = 8.2 Hz, 2H), 2.31 (s, 3H). |
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