Structure of Boc-Lys(Ac)-OH
CAS No.: 6404-26-8
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CAS No. : | 6404-26-8 |
Formula : | C13H24N2O5 |
M.W : | 288.34 |
SMILES Code : | O=C(O)[C@@H](NC(OC(C)(C)C)=O)CCCCNC(C)=O |
MDL No. : | MFCD00057791 |
InChI Key : | IOKOUUAPSRCSNT-JTQLQIEISA-N |
Pubchem ID : | 7016049 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 20 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.77 |
Num. rotatable bonds | 11 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 3.0 |
Molar Refractivity | 73.89 |
TPSA ? Topological Polar Surface Area: Calculated from |
104.73 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.32 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.94 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.27 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.67 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.8 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.0 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.49 |
Solubility | 9.25 mg/ml ; 0.0321 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.73 |
Solubility | 0.542 mg/ml ; 0.00188 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.25 |
Solubility | 1.6 mg/ml ; 0.00556 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.39 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
1.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.02 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | A solution of <strong>[6404-26-8]Boc-Lys(Ac)-OH</strong> (0.3 g, 1.04 mmol) and NMM (0.11 niL, 1.04 mmol) in DMF (10 mL) is treated at -20 0C with IBCF, 0.14 mL, 1.04 mmol). After 10 min at -20 0C, ?-phenylendiamine (0.11 g, 1.04 mmol) is added. The reaction mixture is allowed to stir while slowly warming to room temperature (1 h) and is then stirred for an additional 3 h. The solvent is evaporated, and the residue is partitioned between EtOAc and H2O. The EtOAc layer is washed with 5% NaHCO3 and brine and dried over Na2SO4. The solution is filtered, the solvent is evaporated, and the residual solid is dissolved in glacial AcOH (10 mL). The solution is heated at 65 0C for 1 h. After the solvent is evaporated, the residue is precipitated from Et2O/Pe (1:9, v/v): yield 0.3 g (80%); RbetaB) 0.71; HPLC K 3.03; mp 141- 143 0C; [(X]20D -7.6; m/z 362 (M+H)+; 1H-NMR (DMSO-^6) delta 1.29-1.84 (m, 15H), 2.02 (s, 3H), 3.20 (m, 2H), 4.87 (m, IH), 7.26-7.70 (m, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 1. Synthesis of H-Lvs(Ac)-aminocvanobenzothiazole, trifluoroacetate salt; [0078] To a stirred solution of Boc-Lys-(Ac)-OH (20.5 g, 71 mmol) in dry THF (410 mL), N- methylmorpholine (7.8 mL, 71 mmol) was added under an atmosphere of N2. The reaction vessel was cooled to 4C for 20 minutes, at which time isobutylchloro formate (9.3 mL, 71 mmol) was added drop-wise. The reaction was allowed to stir in an ice bath for approximately 60 minutes, at which time 6-amino-2-cyanobenzothiazole (10 g, 57 mM) was added. The reaction was allowed to stir for approximately 30 minutes in the ice bath, removed, and the reaction mixture allowed to reach room temperature overnight. The reaction was then filtered through a Buchner funnel, and the filtrate concentrated to a solid foam. This solid foam was dissolved in dichloromethane (1 L) and washed 2X with NaHC03 (sat. aq., 300 mL). The organic phase was dried over Na2S04, filtered, and concentrated to provide a solid foam. This solid foam was then purified by silica gel chromatography with a gradient of heptane / ethyl acetate (EtOAc) (40 % EtOAc to 100% EtOAc step gradient over 80 minutes) to provide 24.7 g of Boc-Lys(Ac)-aminocyanobenzothiazole as a foamy solid.[0079] To the foamy solid, a precooled (-20 C) mixture of thioanisole (48 mL) andtrifluoroacetic acid (270 mL) was added under an atmosphere of N2. The progress was monitored by reverse phase HPLC. Once the starting material was consumed, the reaction was concentrated to a thick syrup under high vacuum. This was then purified by silica gel chromatography with a gradient of dichloromethane (DCM)/methanol (MeOH) (5% MeOH to 30% MeOH step gradient over 45 minutes.) to give 22.4 g (85%) of the title compound: 1H NMR (DMSO-d6) delta 10.97 (s, 1H), 8.71 (s, 1H), 8.29 (s, 3H), 8.24 (d, 1H), 7.79-7.76 (m, 1H), 3.98 (s, 1H), 2.99 (q, 2H), 1.82 (q, 2H), 1.72 (s, 3H), 1.40-1.33 (m, 4H); MS expected 346 (Ci6Hi9N502S, M+l), found 346. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of BOC-L-Lys(Ac)-OH (22.5 mg, 0.08 mmol) in DMF (0.5 mL) was added diisopropylethylamine (36 uL, 0.2 mmol) and TSTU (23.5 mg, 0.8 mmol). The mixture was stirred at room temperature for 30 minutes that was followed by the addition of Compound No. 12 (10 mg, 0.026 mmol). After stirring at room temperature for 2 hrs, the solution was concentrated to dryness in vacuo and the residue was stirred as a suspension in CH3CN (0.5 mL) and EtOAc (0.5 mL) at room temperature overnight. The dark blue precipitate (2 mg) was collected by suction filtration and dried to a constant weight. Compound No. 13 serves as a HDAC substrate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With O-(benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium tetrafluoroborate; N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In dichloromethane; at 20℃; for 1h;Inert atmosphere; | General procedure: All peptide coupling reactions were carried out under N2 atmosphere.with dry solvent, using methylene chloride and/or acetonitrile for peptide couplings. The amine (1.1 -1.5 equiv.) and acid (1.0 equiv.) were weighed into a dry flask along with 4-8 equiv of DIPEA and 1.1 equiv of TBTU.* Anhydrous methylene chloride and/or acetonitrile were added to generate a 0.1M solution. The solution was stirred at room temperature for 1 hour and reactions were monitored by TLC upon completion. The crude reaction was extracted with pH 1 hydrochloric acid solution, then saturated sodium bicarbonate solution, and finally brine. The organic layers were combined, and dried over sodium sulfate, filtered and concentrated in vacuo. The crude product underwent purification via flash column chromatography on silica gel using a gradient of ethyl acetate-hexane to yielded desired peptide. * Some coupling reactions would not go to completion using only TBTU and therefore 0.8-1.0 equiv of HATU, and/or DMTMM or T3P were used. In a few cases up to 0.8 equiv of all three coupling reagents were used. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 18h; | A mixture of puromycin dihydrochloride (50 mg, 0.092 mmol) , Oi-Boc-Lys (epsilon-Ac) -OH (31 mg, 0.11 mmol) , EDC-HC1 (21 mg, 0.11 mmol), HOBt-H20 (17 mg, 0.11 mmol), and DIEA (N,N- diisopropylethylamine) (18 ]1L, 0.11 mmol) was stirred in DMF (10 ml) at rt for 18 h. After concentrating the solution under reduced pressure, the residue was dissolved in DCM. The DCM solution was washed with 0 three times, dried over Na2S04, and concentrated. The crude oil was purified by silica gel column chromatography using a linear gradient from 5 to 10 % MeOH in DCM and dried to yield a-Boc-Lys ( E-AC) -Puromycin as a white solid (55 mg, 75 % yield) : mp: 182-183 C; NMR (500 MHz, DMSO) delta 8.43 (s, 1H, H-29) , 8.22 (s, 1H, H-32), 8.15 (d, J = 1.1 Hz, 1H, H-8'), 7.74 (d, J = 7.1 Hz, 2H, Eta-2', H-23'), 7.15 (d, J = 8.4 Hz, 2H, H-17), 6.86 (d, J = 8.3 Hz,' 1H, H-9'), 6.80 (d, J = 8.6 Hz, 2H, H-16, H-20), 6.03 (d, J = 4.6 Hz, 1H, H-28), 5.98 (d, J = 2.8 Hz, 1H, H-27) , 5.18 (t, J = 5.4 Hz, 1H, H-22), 4.60 (dd, J - 13.6, 8.1 Hz, 1H, H-7), 4.52 - 4.39 (m, 2H, H-25, H-26), 3.98 - 3.76 (m, 2H, H-24), 3.70 (s, 3H, H-14) , 3.69 -3.40 (m, 6H, H-34, H-35), 3.02 - 2.86 (m, 3H, H-3, H-21) , 2.76 (dd, J = 13.7, 8.7 Hz, 1H, H-21), 1.77 (s, 3H, H-l) , 1.52 - 1.38 (m, 2H, H-6), 1.38 - 1.32 (s, 9H, H-ll, H-12, H-13), 1.33 - 1.05 (ra, 6H, H-4, H-5) ppm. 13C NMR (101 MHz, DMSO) delta 169.5 (C-8, C-23), 158.4 (C-9), 155.8 (C-2), 154.8 (C-33), 152.4 (C-32), 150.2 (C-31) , 138.4 (C-29), 138.3 (C-15), 131.0 (C-17, C-19), 129.8 (C-18) , 120.2 (C- 30), 114.0 (C-16, C-20), 90.0 (C-28) , 78.8 (C-10, C-25) , 73.8 (C- 27), 61.5 (C-24), 55.6 (C-26) , 55.3 (C-7), 54.5 (C-22), 51.0 (C- 14), 40 ( (C-34, C-35, underneath DMSO peak), 39.1 (C-3), 38.2 (C- 21), 32.5 (C-6), 29.5 (C-4) , 28.9 (C-ll, C-12, C-13), 23.7 (C-5) , 23.4 (C-l); MS (ifl/z) : [M] + calcd. for C35H51N9O9, 742.38; found, 742.47. |
75% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 18h; | A mixture of 15 puromycin dihydrochloride (50 mg, 0.092 mmol), 16 alpha-Boc-Lys(epsilon-Ac)-OH (31 mg, 0.11 mmol), 17 EDC.HCl (21 mg, 0.11 mmol), HOBt.H2O (17 mg, 0.11 mmol), and 18 DIEA (N,N-diisopropylethylamine) (18 muL, 0.11 mmol) was stirred in 19 DMF (10 ml) at rt for 18 h. After concentrating the solution under reduced pressure, the residue was dissolved in 20 DCM. The DCM solution was washed with H2O three times, dried over Na2SO4, and concentrated. The crude oil was purified by silica gel column chromatography using a linear gradient from 5 to 10% 21 MeOH in DCM and dried to yield alpha-Boc-Lys(s-Ac)-Puromycin as a white solid (55 mg, 75% yield): mp: 182-183 C.; 1H NMR (500 MHz, DMSO) delta 8.43 (s, 1H, H-29), 8.22 (s, 1H, H-32), 8.15 (d, J=7.7 Hz, 1H, H-8?), 7.74 (d, J=7.1 Hz, 2H, H-2?, H-23?), 7.15 (d, J=8.4 Hz, 2H, H-17), 6.86 (d, J=8.3 Hz, 1H, H-9?), 6.80 (d, J=8.6 Hz, 2H, H-16, H-20), 6.03 (d, J=4.6 Hz, 1H, H-28), 5.98 (d, J=2.8 Hz, 1H, H-27), 5.18 (t, J=5.4 Hz, 1H, H-22), 4.60 (dd, J=13.6, 8.1 Hz, 1H, H-7), 4.52-4.39 (m, 2H, H-25, H-26), 3.98-3.76 (m, 2H, H-24), 3.70 (s, 3H, H-14), 3.69-3.40 (m, 6H, H-34, H-35), 3.02-2.86 (m, 3H, H-3, H-21), 2.76 (dd, J=13.7, 8.7 Hz, 1H, H-21), 1.77 (s, 3H, H-1), 1.52-1.38 (m, 2H, H-6), 1.38-1.32 (s, 9H, H-11, H-12, H-13), 1.33-1.05 (m, 6H, H-4, H-5) ppm. 13C NMR (101 MHz, DMSO) delta 169.5 (C-8, C-23), 158.4 (C-9), 155.8 (C-2), 154.8 (C-33), 152.4 (C-32), 150.2 (C-31), 138.4 (C-29), 138.3 (C-15), 131.0 (C-17, C-19), 129.8 (C-18), 120.2 (C-30), 114.0 (C-16, C-20), 90.0 (C-28), 78.8 (C-10, C-25), 73.8 (C-27), 61.5 (C-24), 55.6 (C-26), 55.3 (C-7), 54.5 (C-22), 51.0 (C-14), 40 ((C-34, C-35, underneath DMSO peak), 39.1 (C-3), 38.2 (C-21), 32.5 (C-6), 29.5 (C-4), 28.9 (C-11, C-12, C-13), 23.7 (C-5), 23.4 (C-1); MS (m/z): [M]+ calcd. for C35H51N9O9, 742.38; found, 742.47. |
Tags: 6404-26-8 synthesis path| 6404-26-8 SDS| 6404-26-8 COA| 6404-26-8 purity| 6404-26-8 application| 6404-26-8 NMR| 6404-26-8 COA| 6404-26-8 structure
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P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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