Structure of 2-Chloro-3-nitropyridin-4-ol
CAS No.: 629655-23-8
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CAS No. : | 629655-23-8 |
Formula : | C5H3ClN2O3 |
M.W : | 174.54 |
SMILES Code : | OC1=C([N+]([O-])=O)C(Cl)=NC=C1 |
MDL No. : | MFCD07778466 |
InChI Key : | RGJVVCCIZKLJRL-UHFFFAOYSA-N |
Pubchem ID : | 45789635 |
GHS Pictogram: | ![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 40.09 |
TPSA ? Topological Polar Surface Area: Calculated from | 78.94 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from | 0.98 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by | 1.84 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from | 1.35 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from | -0.7 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by | -0.53 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions | 0.59 |
Log S (ESOL):? ESOL: Topological method implemented from | -2.42 |
Solubility | 0.665 mg/ml ; 0.00381 mol/l |
Class? Solubility class: Log S scale | Soluble |
Log S (Ali)? Ali: Topological method implemented from | -3.12 |
Solubility | 0.133 mg/ml ; 0.000762 mol/l |
Class? Solubility class: Log S scale | Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by | -1.44 |
Solubility | 6.29 mg/ml ; 0.0361 mol/l |
Class? Solubility class: Log S scale | Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg | High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg | No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) | No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) | No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) | No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) | No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) | No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) | No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from | -6.06 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from | 0.0 |
Ghose? Ghose filter: implemented from | None |
Veber? Veber (GSK) filter: implemented from | 0.0 |
Egan? Egan (Pharmacia) filter: implemented from | 0.0 |
Muegge? Muegge (Bayer) filter: implemented from | 1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat | 0.55 |
PAINS? Pan Assay Interference Structures: implemented from | 0.0 alert |
Brenk? Structural Alert: implemented from | 3.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from | No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) | 2.01 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In butan-1-ol; at 110℃; for 48h; | A solution of <strong>[629655-23-8]2-chloro-3-nitro-4-hydroxypyridine</strong> (4.99 g, 28.59 mmol) and (1R)-1-(4-bromophenyl)ethanamine (5.20 g, 25.99 mmol) and 3.61 mL (25.99 mmol) of triethylamine (TEA) in 50 mL of n-butanol was heated to 110 C. for 48 hours. The solvent was removed in vacuo and the crude mixture filtered through silica gel using CH2Cl2. The solvent was removed in vacuo and the crude material (4.2 g) diluted with 50 mL of acetonitrile, treated with 4 mL of phosphorous oxychloride (POCl3), and the reaction mixture was heated to 80 C. for three hours. Additional POCl3 was added during this time to drive the reaction to completion. The solvent was concentrated in vacuo, diluted with EtOAc, washed with aqueous sodium bicarbonate and brine, dried over MgSO4, filtered and concentrated under vacuum. The residue was subjected to silica gel chromatography eluted with 10-30% ethyl acetate in hexanes to afford N-[(1R)-1-(4-bromophenyl)ethyl]-4-chloro-3-nitropyridin-2-amine with a mass ion (ES+) of 338.0 for M+H+(Br79). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With sodium acetate; In N,N-dimethyl-formamide; at 120℃; for 5h; | To a solution of 2 , 4-dichloro-3-nitropyridine (100 g, 518 mmol) in N,iV-dimethylformamide (500 mL) was added sodium acetate (106 g, 1295 mmol) at room temperature. The mixture was stirred at 120C for 5 hours. The reaction completion was confirmed by TLC, then the mixture was cooled to room temperature and diluted with water (500 mL) followed by aqueous 2N HC1 solution to adjust the pH < 4. The aqueous layer was extracted with ethyl acetate (5 x 750 mL) . The combined organic layers were washed with brine, dried over sodium sulfate and under vacuum to give a crude product. The crude product was triturated with water, and the resulting solid was collected by filtration, and dried under vacuum to give the title compound (63 g, 65%). MS(ESI)m/z: 175.1 (M+l); XH NMR (400 MHz, DMSO-d6) : delta 7.10 (d, J = 6.0 Hz, 1H) , 8.25 (d, J = 5.6 Hz, 1H) , 13.10 (br s, 1H) . |
60% | With sodium acetate; In N,N-dimethyl-formamide; at 120℃; for 3h; | [0715] To a solution of XIV-2 (10 g, 52.1 mmol) in DMF (60 mL) was added NaOAc (10.3 g, 125 mmol), the reaction mixture was stirred at 120 C. for 3 hrs. The mixture was cooled to rt and poured into water, extracted with EtOAc. Combined organic phase was washed with brine and concentrated under vacuum to afford the crude product. The residue was purified by column chromatography (PE:EA=1:1) to afford XIV-3 as a pale yellow solid (5.4 g, 60% yield). 1HNMR (CD3OD, 300 MHz) delta 8.14 (d, J=6.0 Hz, 1H), 6.98 (d, J=6.0 Hz, 1H). |
60% | With sodium acetate; In N,N-dimethyl-formamide; at 120℃; for 3h; | To a solution of XIV-2 (10 g, 52.1 mmol) in DMF (60 mL) was added NaOAc (10.3 g, 125 mmol), the reaction mixture was stirred at 120C for 3 hrs. The mixture was cooled to rt and poured into water, extracted with EtOAc. Combined organic phase was washed with brine and concentrated under vacuum to afford the crude product. The residue was purified by column chromatography (PE:EA=1:1) to afford XIV-3 as a pale yellow solid (5.4 g, 60% yield). ?HNMR (CD3OD, 300MHz) oe 8.14 (d, J=6.0 Hz, 1H), 6.98 (d, J=6.0Hz, 1H). |
With cesium acetate; In DMF (N,N-dimethyl-formamide); at 80℃; for 2h; | A solution of 2,4-dichloro-3-nitropyridine (6.5 g, 33.7 mmol) and cesium acetate (16.2 g, 84.2 mmol) in 100 mL of DMF was heated at 80 C. for 2 h. The reaction was cooled to room temperature, 50 mL of sat. aq. NH4Cl was added and the mixture was concentrated. The residue was partitioned between 200 mL DCM, 100 mL sat. aq. NH4Cl and 50 mL H2O. The layers were separated and the aqueous layers was backwashed with 200 mL DCM (4×). The combined organics were dried and concentrated (high vacuum) to afford the title compound as a tan solid: 1H NMR (CD3OD) delta6.97 (d, 1H, 5.9 Hz); 8.14 (d, 1H, 5.6 Hz). MS: MH+=174.9. | |
Step-III: Synthesis of 2-chloro-3-nitropyridin-4-ol from 2, 4-dichloro-3-nitro- pyridine; Charged in a R.B. flask dimethylformamide (500 ml), . 2,4-dichlo-3-nitropyridine (100 gm) and sodium acetate (102.4 gm) at 25- 300 C. Heated the reaction mass to 120 to 125C and maintained for 2 hrs. Stopped heating and cooled the reaction mass gradually to 30 to 35C. Charged saturated ammonium chloride solution (800 ml) and stirred for 1045 min. Concentrated the reaction mass at 65 to 7O0C under vacuum to get crude solid product. Charged to the residue saturated ammonium chloride solution (1600 ml) DM water (800 ml) and dichloromethane (1000 ml) and stirred for 15 minutes. Separated the organic layer and extracted the aqueous layer further with dichloromethane (4x500 ml). Combined the organic layer and concentrated under vacuum to get thick solid mass. Charged toluene (1200 ml) to the residue and stirred at 25 - 30C for 30-45 minutes. Filtered the product, washed with cold toluene (400 ml), and dried under vacuum at 40 to 45C to get 2-chloro-3-nitropyridin-4-ol. Dry wt = 45 gm (50%). | ||
With sodium acetate; In N,N-dimethyl-formamide; at 120℃; for 3h;Inert atmosphere; | Compound WX065-1 (35.00 g, 181.36 mmol) and sodium acetate (44.63 g, 544.08 mmol) were dissolved in N,N-dimethylformamide (600.00 mE) at room temperature. The reaction mixture was heated to 120 C. and stirred for 3 hours under nitrogen atmosphere. After the reaction, the mixture was cooled to room temperature and concentrated under reduced pressure to remove the solvent. Ethyl acetate (500 mE) and water (200 mE) were added to the obtained residue. The organic phases were separated and the aqueous phases were extracted with ethyl acetate (200 mEx3). The organic phases were combined, washed with saturated brine (200 mE) and dried over anhydrous sodium sulfate, followed by filtration. The filtrate was concentrated under reduced pressure to remove the solvent to obtain the crude product. The obtained crude product was slurried for 30 minutes with the mixture of petroleum ether and ethyl acetate, followed by filtration. The filter cake was dried in vacuum for 30 minutes to obtain the target product WX068- 3. ?H NMR (400 MHz, DMSO_d5) oe: 8.19 (d, J=6.0 Hz, 1H), 7.03 (d, J=6.0 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In ethanol; for 72h;Heating / reflux; | To a solution of tert-butyl 2-(2-aminoethyl)piperidine-1-carboxylate (1.50 g, 6.59 mmol) and <strong>[629655-23-8]2-chloro-3-nitropyridin-4-ol</strong> (0.959 g, 5.50 mmol) in 5 mL of EtOH, was added DIEA (1.50 mL, 8.25 mmol). The reaction was refluxed at 78 C. for 3 days, diluted with 200 mL of DCM, washed with 100 mL of saturated sodium bicarbonate solution (2×0 and concentrated. The residue was purified with 10% MeOH-DCM to give the title comnpound: 1H NMR (CDCl3) delta1.36-1.71 (m, 16H), 2.05-2.15 (b, 1H), 2.76-2.84 (t, 1H), 3.37 (b, 1H), 3.80 (b, 1H), 4.00 (b, 1H ), 4.39 (b, 1H), 6.24-6.25 (d, 1H, 5.5 Hz), 8.06-8.08 (d, 1H, 5.5 Hz), 12.4 (b, 1H). MS: MH+=367. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In 1,1-dichloroethane; N,N-dimethyl-formamide; at 20℃; for 1h; | To a solution of <strong>[629655-23-8]2-chloro-3-nitropyridin-4-ol</strong> (0.722 g, 4.14 mmol) in 20 mL of dichloroethane and 0.5 mL DMF, was added DIEA (2.20 mL, 12.4 mmol) followed by chloro(methoxy)methane (0.63 mL, 8.28 mmol). After 1.0 h at ambient temperature, the reaction was concentrated and redisolved in 150 mL DCM. The DCM solution was washed with 100 mL of saturated sodium bicarbonate solution, 100 mL water and 100 mL of brine, respectively. The organics were dried and concentrated to afford the title compound as a white solid: 1H NMR (CDCl3) delta3.47 (s, 3H), 5.37 (s, 2H), 6.58-6.60 (d, 1H, 7.9 Hz), 7.54-7.57 (d, 1H, 7.9 Hz). MS: MH+=219.0 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In DMF (N,N-dimethyl-formamide); dichloromethane; at 20℃; for 1h; | To a solution of <strong>[629655-23-8]2-chloro-3-nitropyridin-4-ol</strong> (0.305 g, 1.75 mmol) in 10 mL DCM and 0.5 mL of DMF, was added DIEA (0.460 mL, 2.63 mmol) followed by [2-(chloromethoxy)ethyl](trimethyl)silane (0.370 mL, 2.10 mmol). The reaction was stirred at ambient temperature for 1.0 h, diluted with 100 mL of DCM, and washed with saturated sodium bicarbonate solution (2×). The organic layer was dried, concentrated and purified with 15%-100% EtOAc-Hexane on silica chromatography to give the title compound as white solid: 1H NMR (CDCl3) delta0.034 (s, 9H), 0.96-1.02 (m, 2H), 3.63-3.68 (m, 2H), 5.39 (s, 2H), 6.59-6.62 (d, 1H, 7.9 Hz), 7.51-7.54 (d, 1H, 7.9 Hz |
Tags: 629655-23-8 synthesis path| 629655-23-8 SDS| 629655-23-8 COA| 629655-23-8 purity| 629655-23-8 application| 629655-23-8 NMR| 629655-23-8 COA| 629655-23-8 structure
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