Structure of 53234-56-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 53234-56-3 |
Formula : | C7H3ClN2O2 |
M.W : | 182.56 |
SMILES Code : | O=C(O)C1=NC(Cl)=C(C#N)C=C1 |
MDL No. : | MFCD18258363 |
InChI Key : | ROPFRDWKBGCDEZ-UHFFFAOYSA-N |
Pubchem ID : | 53433239 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H312-H315-H319-H332-H335 |
Precautionary Statements: | P261-P264-P270-P271-P280-P301+P312-P302+P352-P304+P340-P305+P351+P338-P330-P332+P313-P337+P313-P362-P403+P233-P405-P501 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 40.92 |
TPSA ? Topological Polar Surface Area: Calculated from |
73.98 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.77 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.39 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.3 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-1.12 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.35 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.74 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.15 |
Solubility | 1.29 mg/ml ; 0.00705 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.55 |
Solubility | 0.518 mg/ml ; 0.00284 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.1 |
Solubility | 1.45 mg/ml ; 0.00793 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.43 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.79 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With potassium fluoride; In 1-methyl-pyrrolidin-2-one; at 95.0℃; for 18.0h; | EXAMPLE 225-cyano-6-(isobufylamino)picolinic acid (70) A mixture of <strong>[53234-56-3]6-chloro-5-cyanopicolinic acid</strong> (30 mg, 0.16 mmol), isopropylamine (20 ul, 0.23 mmol), and KF (28 mg, 0.48 mmol) in N-methylpyrrolidinone (1 ml) was heated for 18 hrs at 95 C. The mixture was diluted with water (4ml) and standed overnight. The resulting precipitate was collected by filtration and dried under vacuum to afford 25 mg (75%) of the desired product 70. 1H NMR (600MHz, DMSOd6) delta 13.2 (s, IH), 8.03 (d, IH, J= 7.8 Hz), 7.25-7.21 (m, IH), 7.17 (d, IH, J= 7.8 Hz), 3.26-3.24 (m, 2H), 1.99-1.95 (m, IH), 0.89 (d, 6H, 6.6 Hz). MS: m/z Calcd 219.2 Found MH+ 220.1 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | Step 2Synthesis of 6-(4-chlorobenzylthio)-5-cyanopicolinic acid (52)A mixture of <strong>[53234-56-3]6-chloro-5-cyanopicolinic acid</strong> (30 mg, 0.16 mmol), 4-chlorophenyl methanethiol (24 ul, 0.18 mmol), and CsCO3 (156 mg, 0.48 mmol) in dimethylformamide (2 ml) was heated for 16 hrs at 45 0 C. After removal of the solvent, the residue was treated with water (2 ml) and acidified with IN-HCl to pH2. The precipitate was collected by filtration and dried under vacuum to afford 40 mg (82%) of the desired product 52. 1H NMR (600MHz, DMSO-d^) delta 13.6 (br s, IH), 8.46 (d, IH, J=7.8 Hz), 8.15 (d, IH, J=7.8 Hz), 7.55 (d, 2H, J=9 Hz), 7.47 (d, 2H, J= 9Hz). MS: m/z Calcd 304.8 Found MH+ 305.0 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
EXAMPLE 216-(4-chlorobenzylthio)-5-cyanopicolinic acid (52) <n="101"/> Step 1Synthesis of 6-chloro-5-cyanopicolinic acid (51) To a solution of 6-chloro-5-cyano-2-picoline 50 (3.0 g, 20 mmol) in COnC-H2SO4 (20 ml) was added CrO3 (4.9 g, 49 mmol) portionwise over 2 hr period while the reaction mixture was kept below 2O 0 C. After stirring overnight at room temperature, the mixture was poured into ice-water and the resulting solid was collected by filtration to give the crude 6-chloro-5-(aminocarbonyl)-2-picolinic acid which was dissolved in POCl3 (15 ml). After heating at reflux for 30 min, the reaction mixture was concentrated in vacuo and the residue was treated with ice water. The precipitate was collected by filtration to afford 2.5 g (71% for 2 steps) of the desired product 51. 1H NMR (600MHz, DMSO-d6) delta 8.65 (delta, IH, theta= 7.8 Hzeta), 8.17 (delta, IH, theta= 7.8 Hzeta) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With oxalyl dichloride;N,N-dimethyl-formamide; In dichloromethane; at 20.0℃; for 4.0h; | Example 18: Preparation of 6-Chloro-5-cyano-pyridine-2-carboxylic acid (2-methyl-5- pentafluoroethyl-4-trifluoromethyl-2H-pyrazol-3-yl)-amideTo a suspension of <strong>[53234-56-3]6-chloro-5-cyano-pyridine-2-carboxylic acid</strong> (5.6 g, 25.2 mmol)(commercially available) in dichloromethane (100 ml) was added N,N-dimethylformamide (0.2 ml) at ambient temperature, followed by oxalyl chloride (3.2 ml, 38 mmol). The reaction mixture was stirred for 4 hour at room temperature and then concentrated. The residue was was used for the next step.2-Methyl-5-pentafluoroethyl-4-trifluoromethyl-2H-pyrazol-3-ylamine (Example II, 6.66 g, 23.5 mmol) was dissolved in tetrahydrofuran (120 ml) and pyridine (2.7 ml, 34 mmol) was added. 6-Chloro-5-cyano-pyridine-2-carboxylic acid chloride was added portionwise. The reaction mixture was stirred at ambient temperature for 19 hours. Then aqueous sodium hydrogen carbonate (saturated) was added and the aqueous phase was extracted three times with ethyl acetate. The combined organic extracts were dried over sodium sulphate, filtered and concentrated. The residue was purified by columnchromatography on silica gel (eluent: heptane / ethyl acetate 3 : 1) to give 6-chloro-5-cyano- pyridine-2-carboxylic acid (2-methyl-5-pentafluoroethyl-4-trifluoromethyl-2H-pyrazol-3-yl)- amide (7.1 g, 71% yield). 1H- MR (400 MHz, CDC13): 9.4 (sb, 1H), 8.35 (d, 1H), 8.31 (d, 1H), 3.90 (s, 3H) ppm. |
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