Structure of 4385-77-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 4385-77-7 |
Formula : | C12H9NO2 |
M.W : | 199.21 |
SMILES Code : | OC(=O)C1=CC=CC(=C1)C1=CC=CN=C1 |
MDL No. : | MFCD03426512 |
InChI Key : | PXASTGBSGPFLFJ-UHFFFAOYSA-N |
Pubchem ID : | 2795575 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 15 |
Num. arom. heavy atoms | 12 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 56.63 |
TPSA ? Topological Polar Surface Area: Calculated from |
50.19 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.54 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.0 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.45 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.61 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.37 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.99 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.8 |
Solubility | 0.319 mg/ml ; 0.0016 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.68 |
Solubility | 0.416 mg/ml ; 0.00209 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.92 |
Solubility | 0.0239 mg/ml ; 0.00012 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.1 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.95 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | With potassium carbonate;bis-triphenylphosphine-palladium(II) chloride; In water; acetonitrile;Reflux; | Example 163 A3-(pyridin-3-yl)benzoic acid; To a solution of 3-boronobenzoic acid (1.5 g, 9 mmol) and 3-bromopyridine (1.5 g, 9.9 mmol) in acetonitrile (40 mL) and water (40 mL), potassium carbonate (5.5 g, 40 mmol), Bis(triphenylphosphine)palladium(II) chloride (400 mg, 0.37 mmol) was added. The mixture was stirred under reflux overnight. Then the hot suspension was filtered and concentrated to half of the original volume and washed with dichloromethane. The aquatic phase was adjusted to pH=3 with hydrochloric acid (1 M) and filtrated, washed with water. The residue was dried in vacuum to obtain 1.5 g of 3-(pyridin-3-yl)benzoic acid. Yield: 83%. LC-MS (ESI) m/z: 200 (M+1)+. |
With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In acetonitrile; at 90℃; for 14.0h; | 20 ml of 0.4 M sodium carbonate aqueous solution,3.2 g of 3-bromopyridine (21), 3.3 g of 3-carboxyphenylboronic acid and 1.15 g of tetrakis (triphenylphosphine) palladium (0) were added to 100 ml of acetonitrile,And the mixture was stirred at 90 C. for 14 hours. After completion of the reaction,Filter through Celite, add 1N dilute hydrochloric acid to the filtrate, Extracted with ethyl acetate, and washed with saturated brine.The organic layer was dried over anhydrous magnesium sulfate,The solvent was distilled off under reduced pressure.The precipitated crystals were washed with hexane and filtered,3- (Pyridin-3-yl) benzoic acid (22)Was obtained. To the solid,50 ml of ethanol and 5 ml of concentrated sulfuric acid were added.After heating under reflux for 12 hours,Sodium bicarbonate was added to the reaction solution to quench. After distilling off ethanol under reduced pressure,An aqueous sodium hydrogen carbonate solution was addedAnd extracted three times with ethyl acetate. The organic layers were combined,Washed with saturated brine,After drying with anhydrous magnesium sulfate,The solvent was distilled off under reduced pressure.The residue was purified by silica gel column chromatography (n-hexane: ethyl acetate = 4: 1)Ethyl 3- (pyridin-3-yl) benzoate(23) was obtained |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-yloxyl-tris-(pyrrolidino)-phosphonium hexafluorophosphate; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 16.0h; | A mixture of PyBOP (0.08 mmol in 200 ml_ of DMF), [3'-(1 - piperazinylmethyl)-3-biphenylyl]methyl}amine (44 Dmol in 200 mL of DMF) and DIPEA (30 mL) were added to <strong>[4385-77-7]3-(3-pyridinyl)benzoic acid</strong> (0.07 mmol). The resulting mixture was stirred for 16 hours at room temperature, then the solvent was removed under vacuum. The residue was redissolved in methanol and purified by loading onto a SPE cartridge (SCX, 500 mg), washing with MeOH, and eluting with a 2 M solution of NH3 in MeOH. The NH3 fraction was collected and evaporated under vacuum to give a gum which was redissolved in 1 :1 CHCI3 / TFA (0.5 mL). After stirring for 2 hours, the solvent was removed under vacuum and the residue was purified by MDAP to give the desired compound as a TFA salt. The free base of the compound was obtained by loading the salt onto a SPE cartridge (SCX, 500 mg), washing with MeOH, and eluting with 2 M NH3ZMeOH. The ammonia fraction was collected and the solvent was removed under vacuum to give the title compound (14 mg). LC/MS: m/z, 463 (M+H), 2.32 min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With oxalyl dichloride;N,N-dimethyl-formamide; In dichloromethane; at 0 - 20℃; for 3.5h; | EXAMPLE 5; (S)-8-cyano-15-methyl-N-[3-(3-pyridin-3-ylphenyl)-1H-1,2,4-triazol-5- yl]tetracyclo[6.6.2.02'7.09'14]hexadeca-2,4,6,9,11,13-hexaene-15-carboxamide EPO <DP n="61"/>; Step a; methyl 3-(pyridin-3-yI)benzoate; [00191] To a suspension of <strong>[4385-77-7]3-(pyridin-3-yl)benzoic acid</strong> (0.8 g, 4 mmol) and N,N- dimethylfo?nide (2 drops) in anhydrous methylene chloride (30 mL) was added oxalyl chloride (0.42 mL, 4.8 mmol) dropwise at 0C under argon. The mixture was stirred at RT for 3.5 hr and then concentrated. The yellow solid obtained was dissolved in anhydrous methanol (20 mL) at 0C. After stirring at RT for 30 min, the mixture was concentrated. The residue was dissolved in ethyl acetate, washed with saturated aqueous sodium bicarbonate solution, brine, and dried over anhydrous sodium sulfate. Concentration gave 0.84 g (99% yield) of methyl 3-(pyridin-3- yl)benzoate as a yellow solid. (M+H)+ = 214.16. | |
With thionyl chloride;N,N-dimethyl-formamide; for 17.0h;Heating / reflux; | N-(3-Pyrid-3-ylbenzoyl)-6,7-dihydroxy-l,2,3,4-tetrahydroisoquinoline (Id)3-Pyrid-3-ylbenzoic acid (100 mg, 0.502 mmol) was suspended in 3 triL thionyl chloride together with a catalytical amount of DMF and refluxed for 17 hours before evaporation. The remaining residue was dissolved in 5 mL DMF and 6,7- dihydroxy-l,2,3,4-tetrahydroisoquinoline hydrobromide (124 mg, 0.502 mmol) followed by Et3N (141 muL, 1.00 mmol) were added. The resulting mixture was stirred at room temperature for 3 hours and then diluted with 25 ml water followed by extraction with ethyl acetate (3*30mL). The combined organic phase was dried over MgSO4 and evaporated into a pale mass. Purification with flash chromatography (pet.ether/EtOAc 1/1 ? 1/5) yielded 67 mg (39%) of N-(3-pyrid-3-ylbenzoyl)-6,7-dihydroxy-l,2,3,4- tetrahydroisoquinoline as pale solids. 1H-NMR (CD3OD) rotameric mixture delta 8.83 (br s, IH), 8.53 (br s, IH), 8.10 (br t, IH), 7.79 (br d, IH), 7.72 (br d, IH), 7.60 (br t, IH), 7.55-7.45 (br m, 2H), 6.63-6.55 (ma+mi)(m, 2H), 6.32 (mi)(s, IH), 4.70 (ma)(s, 2H), 4.46 (mi)(s, 2H), 3.95-3.88 (mi)(br, 2H), 3.65-3.57 (ma)(br, 2H), 2.85-2.75 (mi)(br, 2H), 2.75-2.68 (ma)(br, 2H). TLC (EtOAc) Rf 0.45. HRMS (ESI) calc for C2IHi9N2O3 [M+H] 347.1396, found 347.1367. | |
With thionyl chloride;Reflux; | Example 163 Bmethyl 2-hydroxy-3-(3-(pyridin-3-yl)benzamido)benzoate; Thionyl chloride (10 mL) was added to <strong>[4385-77-7]3-(pyridin-3-yl)benzoic acid</strong> (1.5 g, 7.5 mmol) and the mixture was stirred under reflux overnight. The solvent was evaporated under reduced pressure and the residue was dried in vacuum giving 1.5 g crude 3-(pyridin-3-yl)benzoyl chloride. To a solution of methyl 3-amino-2-hydroxybenzoate (950 mg, 5.8 mmol) and pyridine (480 mg, 6 mmol) in toluene (50 mL) was added 3-(pyridin-3-yl)benzoyl chloride (1.5 g, 7 mmol) portion-wise at 0 C. and then stirred at 70 C. for 4 h. The resulting mixture was extracted with ethyl acetate (100 mL×4), the organic phase was washed with water and saturated sodium bicarbonate, dried with anhydrous sodium sulfate and evaporated under reduced pressure to obtain methyl 2-hydroxy-3-(3-(pyridin-3-yl)benzamido)benzoate as a yellow solid (1.8 g, yield 85%). LC-MS (ESI) m/z: 349 (M+1)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With borane-THF; In tetrahydrofuran;Heating / reflux; | 3- (3-PYRIDYL)-BENZYL alcohol 46. To a 100 ML recovery flask was added 3- (3- pyridyl) -benzoic acid 45 (2.00 g, 10.0 mmol, 1.0 eq. ) and THF (20 mL). The resulting suspension is stirred. BH3 (1.0 M in THF, 15 mL, 15 mmol, 1.5 eq. ) was added the resulting mixture was refluxed overnight. Incomplete reduction was observed by LC/MS. Additional BH3 (10 mL) was added and the mixture was refluxed for an additional 6 h. LC/MS indicates complete reduction of the benzoic acid. The reaction mixture was concentrated and diluted with EtOAc. The organic layer was washed with a succession of water, HC1, brine. The combined aqueous layers were extracted with EtOAc. The organic phases were dried over anhydrous NA2SO4, filtered, and concentrated to give a clear oil. The crude materal was purified via flash chromatography (40% to 60% ETOAC/HEX) to give a white solid (995 mg, 53%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃; for 24.0h; | The amine (120 mg, 0.48 mmol) was dissolved in anhydrous CH2C12 (4 mL) then 3- (31- pyridyl)benzoic acid (97 mg, 0.49 mmol), EDC (0.121 g, 0.64 mmol, 1.3 eq.), HOBt (86 mg, 0.64 mmol, 1.3 eq.) and N,N-diisopropyl-N-ethylamine (0.340 mL, 2.0 mmol, 4 eq.) were added sequentially. The mixture was stirred 24 hours at room temperature. Silica gel (~lg) was added and the mixture was concentrated to dryness under reduced pressure. Flash column chromatography (RediSepRf Si02 (24g), 2% MeOH in CH2C12) gave Tripos 8 as a white amorphous solid (143 nig, 68 %). 1H NMR (CDC13, 300 MHz): delta 8.86 (d, J - 2.1 Hz, 1H), 8.61 (dd, J - 1.5 Hz, 4.8 Hz, 1H), 8.08 (d, J = 2.1 Hz, 1H), 8.01 (s, 1H), 7.91 (dt, J = 2.1 Hz, 5.7 Hz, 1H), 7.83 (dd, J - 2.4 Hz, 8.7 Hz, 1H), 7.78 (d, J - 7.8 Hz, 1H), 7.70 (d, J - 7.8 Hz, 1H), 7.54 (t, J - 7.8 Hz, 1H), 7.38 (dd, J = 4,8 Hz, 7.8 Hz, 1H), 6.72 (d, J = 7.2 Hz, 1H), 6.32 (d, J = 8.1 Hz, 1H), 4.25 (d, J = 12.6 Hz, 2H), 3.83 (s, 2H), 2.99 (m, 2H), 2.85 (q, J = 7.2 Hz, 2H), 2.48 (s, 3H), 2.07 (m, 2H), 1.54 (m, 2H); 1.23 (t, J = 7.2 Hz, 3H). EIMS m/r. 430 ([M+H]+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With benzotriazol-1-ol; dicyclohexyl-carbodiimide; In tetrahydrofuran; dichloromethane; | To a flask containing 6.4 g (32.1 mmol) of <strong>[4385-77-7]3-pyrid-3-ylbenzoic acid</strong> (Maybridge), 4.6 g (34 mmol) HOBt-hydrate, was added dry THF (40mL) and methylene chloride (400mL). To the heterogeneous mixture was added 6.88 g (33.4 mmol) Dicyclohexylcarbodiimide (DCC), followed by 6.75 g (33.7 mmol) of 4-Amino- 1-Boc-piperidine (Aldrich). The reaction mixture became nearly homogeneous before a fine white precipitate is observed. The reaction was followed by TLC (5%MeOH/CH2C12) until complete. Upon completion, the reaction mixture was filtered and the filtrate concentrated to dryness. The residue was triturated with hot EtOAc (180mL), filtered and the solids washed with cold EtOAc. The filtrate was then concentrated to dryness, and re-dissolved in 30-40mL CH2C12 before adding 21 g of Si02 and concentrating the mixture to dryness. The solids were eluted on 220 g of Si02 starting with 1 :1 Et0Ac/CH2C12 and increasing to 100% EtOAc. The desired fractions were combined, heptane was added, and the solution concentrated to give 10.4 g (85%) of the Boc-piperidine Amide A as a white solid. 'HNMR (300 MHz, CDC13) = 8.85 (s, 1H), 8.61 (dd, J-4.7, 3.1 Hz, 1H), 7.98 (s, 1H), 7.90 (m, 1H), 7.72 (m, 2H), 7.54 (t, J-8Hz, 1H), 7.38 (m, 1H), 6.17 (d, J=8 Hz, 1H), 4,14 (br m, 3H), 2.91 (t, J=7Hz, 2H), 2.05 (d, J=7Hz, 2H), 1.49 (s,9H). MS(ESI+) - 382 (M+l), 282 (M- Boc+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | at 120℃; for 72.0h; | The mixture of Zn(NO3)2.6H2O (0.5 mmol, 0.149 g), and3 mL NMF in a 20 mL vial was heated to 120C for three days,and then cooled to room temperature. The colorless crystalswere obtained in pure phase, washed with water and ethanol,and dried at room temperature (Yield: 88%). Anal. Calcd. forC24 H16ZnN2O4: C, 62.42; H, 3.49; N, 6.07. Found: C, 62.50;H, 3.48; N,6.05. IR: 1601 m, 1547 m, 1439 m, 1337 s, 1272 m,772 m, 617 m. |
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