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Structure of 42972-46-3

Chemical Structure| 42972-46-3

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Product Details of [ 42972-46-3 ]

CAS No. :42972-46-3
Formula : C8H9NO
M.W : 135.16
SMILES Code : CC(=O)C1=CC(C)=CN=C1
MDL No. :MFCD11553496
InChI Key :DIASEPULVQSMAS-UHFFFAOYSA-N
Pubchem ID :577569

Safety of [ 42972-46-3 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H320-H335
Precautionary Statements:P261-P280-P301+P312-P302+P352-P305+P351+P338

Computational Chemistry of [ 42972-46-3 ] Show Less

Physicochemical Properties

Num. heavy atoms 10
Num. arom. heavy atoms 6
Fraction Csp3 0.25
Num. rotatable bonds 1
Num. H-bond acceptors 2.0
Num. H-bond donors 0.0
Molar Refractivity 39.4
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

29.96 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.58
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

0.9
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

1.59
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

0.46
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.11
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

1.33

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-1.62
Solubility 3.22 mg/ml ; 0.0238 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-1.11
Solubility 10.4 mg/ml ; 0.0769 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-2.72
Solubility 0.26 mg/ml ; 0.00192 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.49 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.18

Application In Synthesis of [ 42972-46-3 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 42972-46-3 ]

[ 42972-46-3 ] Synthesis Path-Downstream   1~23

  • 1
  • [ 42972-46-3 ]
  • [ 49617-20-1 ]
  • 3-acetyl-1-(2,3-O-isopropylidene-5-O-trityl-α-D-ribofuranosyl)-5-methylpyridinium chloride [ No CAS ]
  • 2
  • [ 42972-46-3 ]
  • [ 3222-49-9 ]
  • 3
  • [ 42972-46-3 ]
  • [ 73611-06-0 ]
  • [ 73591-77-2 ]
  • [ 73591-77-2 ]
  • 4
  • [ 42972-46-3 ]
  • [ 22860-91-9 ]
  • [ 73591-87-4 ]
  • [ 73591-88-5 ]
  • 6
  • [ 42972-46-3 ]
  • [ 29681-45-6 ]
  • 7
  • [ 42972-46-3 ]
  • [ 73591-74-9 ]
  • 8
  • [ 42972-46-3 ]
  • [ 73591-81-8 ]
  • 9
  • [ 42972-46-3 ]
  • [ 73591-81-8 ]
  • 10
  • [ 42972-46-3 ]
  • [ 298-12-4 ]
  • C10H8NO3(1-)*K(1+) [ No CAS ]
YieldReaction ConditionsOperation in experiment
With potassium carbonate; In water; at 20℃; for 2.5h; Potassium carbonate (1.97 g, 14.26mmol) was portionwise added to a cold solution of glyoxylic acid (0.548 g, 7.4mmol) in water (10 mL) and the title compound from Preparation 78 (1 g, 7.4 mmole) was slowly incorporated. The mixture was stirred at room temperature for 2.5 hours and then cooled in ice. Acetic acid (3ml, 51.8mmol) was added, followed by hydrazine monohydrate (0.43 mL, 8.9mmol). The solution was heated under reflux for 2 hours and cooled in ice. The pH was adjusted to 7 by the addition of saturated aq. sodium bicarbonate and the solid obtained filtered, washed with cold water, diethyl ether and dried under vacuum to yield a orange solid (0.69 g, 50 %) which was used in the next step without further purification. 8 (DMSO-d6): 2.40 (s, 3H), 7.05 (d,1H), 8.10 (d, 2H), 8.50 (bs,1H), 8.90 (d, 1H). LRMS (m/z): 188 (M+1) +. Retention Time: 4.57 min.
  • 11
  • [ 342602-12-4 ]
  • methyl magnesium (1+); bromide [ No CAS ]
  • [ 42972-46-3 ]
YieldReaction ConditionsOperation in experiment
91% In diethyl ether; at 0 - 20℃; for 6.0h; To an ice-cooled suspension of the title compound of Preparation 77 (2.67 g, 14.8 mmole), methyl magnesium bromide (3M in diethyl ether, 9.86 mL) was dropwise added under argon. After the addition was completed, the reaction mixture was stirred at 0 C for one hour and the temperature was then allowed to rise to room temperature and stirred for five additional hours. After this period of time, the reaction was poured into ice, brine was added and the aqueous phase extracted with EtOAc, dried and concentrated to afford a yellowish oil (1.81 g, 91 %) which was used in the next step without further purification. (CDCI3) : 2.40 (s, 3H), 2.65 (s, 3H), 8.05 (bs, 1 H), 8.62 (d,1 H), 8.98 (d, 1H). LRMS (m/z): 136(M+1) +. Retention Time: 4.77 min.
  • 12
  • [ 42972-46-3 ]
  • [ 1027255-35-1 ]
  • 6-chloro-N-[(1S)-1-(3-[1-(3-methylphenyl)ethyl]amino}phenyl)ethyl]pyrazin-2-amine [ No CAS ]
YieldReaction ConditionsOperation in experiment
14% With sodium tris(acetoxy)borohydride; acetic acid; In 1,2-dichloro-ethane; at 80℃; for 1.0h;Microwave irradiation; Example 12; To a solution of l-(5-methylpyridin-3-yl)ethanone (135 mg, 1 mmol) and N-[(15)-l-(3-aminophenyl)ethyl]-6-chloropyrazin-2-amine (248 mg, 1 mmol) in 1,2-dichloroethane (5 mL) was added sodium triacetoxyborohydride (300 mg, 1.4 mmol), in one portion, and glacial acetic acid (0.18 mL, 3 mmol). The mixture was heated in the microwave reactor at 800C for 1 hour. After this time the mixture was stirred with dilute aqueous hydrochloric acid (2M, 7 mL) for 15 minutes and the two phases were separated. The aqueous phase was basified to pH 9 with solid potassium hydroxide and was extracted with dichloromethane (2 x 20 mL). The extracts were washed with brine (20 mL), dried (MgSθ4) and concentrated under reduced pressure to give an orange oil which was purified by flash chromatography (silica, ethyl acetate/methanol) to give6-chloro-N-[( 1 S)- 1 -(3 - { [ 1 -(3-methy lpheny l)ethy l]amino} pheny l)ethy l]pyrazin-2 -amine (52 mg, 14%) as a pale yellow oil.
  • 13
  • [ 42885-14-3 ]
  • [ 75-16-1 ]
  • [ 42972-46-3 ]
YieldReaction ConditionsOperation in experiment
30% In tetrahydrofuran; diethyl ether; for 2.0h;Heating / reflux; Synthesis of N-(2-methyl-5-nitrophenyl)-4-(5-methylpyridin-3-yl)pyrimidin-2-amine 21; 5-Methyl-nicotinonitrile (2.08 g, 17.6 mmol) is heated at reflux in dry THF (20 mL) with MgMeBr (3 M solution in Et2O, 10 mL, 30 mmol) for 2 h. After cooling down, aq. Na2CO3 is added slowly to quench the reaction. Extractions with DCM affords the crude <n="33"/>mixture which is purified by silica gel chromatography to yield l-(5-methyl-pyridin-3-yl)- ethanone 18 (0.7 g, 30 %). LC/MS (m/z) (M+l)+: 136.1.
  • 14
  • [ 3430-16-8 ]
  • [ 78191-00-1 ]
  • [ 42972-46-3 ]
YieldReaction ConditionsOperation in experiment
To 3-bromo-5-methylpyridine 1-1 (2 g, 11.63 mmol) in diethyl ether (30 ml) at -78 C was added uLi (8.72 ml, 13.95 mmol) dropwise. After 30 min, N-methoxy-N- methylacetamide n-BuLi was added. The resulting mixture was stirred at -78 C for 2 h then at rt overnight, quenched with saturated NH4CI solution and diluted with EtOAc. The organic layer was washed with water, brine, dried over magnesium sulfate and concentrated to give a yellow residue, which was purified by column chromatography (0-65% EtOAc in hexane) to give the desired product 1-2: 1H NMR (400 MHz, CDCI3) δ 8.98 (s, IH), 8.62 (s, IH), 8.04 (s, IH), 2.63 (s, 3H)5 2.41 (s, 3H).
  • 15
  • [ 42972-46-3 ]
  • [ 1431710-10-9 ]
  • 16
  • [ 42972-46-3 ]
  • [ 1431710-19-8 ]
  • 17
  • [ 42972-46-3 ]
  • [ 1431709-76-0 ]
  • 18
  • [ 42972-46-3 ]
  • [ 95-92-1 ]
  • [ 1431710-07-4 ]
YieldReaction ConditionsOperation in experiment
With sodium ethanolate; In tetrahydrofuran; ethanol; at 20 - 60℃; To a mixture of 1-2 (0.5 g, 3.70 mmol) and diethyl oxalate (1.010 ml, 7.40 mmol) in THF (15 ml) was added sodium ethoxide (3.45 ml, 21% wt. in ethanol, 9.25 mmol). The resulting mixture was heated at 60 C for lh followed by stirring at rt overnight. The reaction mixture was poured into cold hexane and the desire product 1^3 was collected as a light yellow solid: ESI+ MS [M+H]+ C12HI4N04 = 236.1.
  • 19
  • [ 42972-46-3 ]
  • 2-bromo-1-(5-methylpyrid-3-yl)ethanone hydrobromide [ No CAS ]
YieldReaction ConditionsOperation in experiment
600 mg With hydrogen bromide; bromine; acetic acid; at 20℃; for 2.0h; 2-bromo-<strong>[42972-46-3]1-(5-methylpyrid-3-yl)ethanone</strong> hydrobromide 300 mg (2.22 mmol) of <strong>[42972-46-3]1-(5-methylpyrid-3-yl)ethanone</strong> are dissolved in 15 mL of glacial acetic acid. 365 μl (2.22 mmol) of hydrobromic acid and 126 μΙ (2.44 mmol) of bromine are added to the medium. The reaction mixture is placed under magnetic stirring at room temperature for 2 hours. Ethyl ether is added to the solution until a precipitate appears. The precipitate corresponding to 2-bromo-<strong>[42972-46-3]1-(5-methylpyrid-3-yl)ethanone</strong> hydrobromide is filtered off, washed with ether and dried. The 600 mg of product obtained have the following characteristics: LC/MS (method G): ESI+ [M+H]+: m/z 214 tr (min) = 1.17. 1H NMR (300 MHz, δ in ppm, DMSO-d6): 2.46 (s, 3H), 5.05 (s, 2H), 8.48 (s,1 H), 8.82 (s, 1 H), 9.12 (s, 1 H).
600 mg With hydrogen bromide; bromine; In acetic acid; at 20℃; for 2.0h; 300 mg (2.22 mmol) of <strong>[42972-46-3]1-(5-methylpyrid-3-yl)ethanone</strong> are dissolved in 15 mL of glacial acetic acid. 365 μl (2.22 mmol) of hydrobromic acid and 126 μl (2.44 mmol) of bromine are added to the medium. The reaction mixture is placed under magnetic stirring at room temperature for 2 hours. Ethyl ether is added to the solution until a precipitate appears. The precipitate corresponding to 2-bromo-<strong>[42972-46-3]1-(5-methylpyrid-3-yl)ethanone</strong> hydrobromide is filtered off, washed with ether and dried. The 600 mg of product obtained have the following characteristics: LC/MS (method G): ESI+ [M+H]+: m/z 214 tr (min)=1.17 1H NMR (300 MHz, δ in ppm, DMSO-d6): 2.46 (s, 3H), 5.05 (s, 2H), 8.48 (s, 1H), 8.82 (s, 1H), 9.12 (s, 1H).
  • 20
  • [ 42972-46-3 ]
  • (8S)-9-[2-(5-methylpyrid-3-yl)-2-oxoethyl]-2-(1S,4S)-2-oxa-5-azabicyclo[2.2.1]hept-5-yl-8-trifluoromethyl-6,7,8,9-tetrahydropyrimido[1,2-a]pyrimidin-4-one [ No CAS ]
  • 21
  • [ 42972-46-3 ]
  • 2-methyl-1-[2-(5-methylpyrid-3-yl)-2-oxoethyl]-7-(1S,4S)-2-oxa-5-azabicyclo[2.2.1]hept-5-yl-2-((S)-trifluoromethyl)-2,3-dihydro-1H-imidazo[1,2-a]pyrimidin-5-one [ No CAS ]
  • 22
  • [ 3430-16-8 ]
  • [ 42972-46-3 ]
YieldReaction ConditionsOperation in experiment
300 mg With bis-triphenylphosphine-palladium(II) chloride; tributyl(1-ethoxyvinyl)stannane; potassium carbonate; In water; N,N-dimethyl-formamide; at 110℃; for 1.0h;Microwave irradiation; The following are successively introduced into a microwave tube: 484 μΙ (4.07 mmol) of 3-bromo-5-methylpyridine in 20 mL of H2O/DMF: (1/3: v/v), 2.03 mL (5.70 mmol) of tributyl(1-ethoxyvinyl)tin, 57.12 mg (0.081 mmol) of bis(triphenylphosphine)palladium(ll) chloride, 1.12 g (8.14 mmol) of potassium carbonate. This mixture is subjected to microwave irradiation at 110C for 1 hour. The reaction mixture is evaporated to dryness and the residue is then taken up in water and extracted with ethyl acetate. The organic phase is dried over magnesium sulfate and evaporated to dryness. The residue obtained is taken up in 6 mL of methanol and 1 mL of 6 N HCl, and the solution is stirred overnight at room temperature. The reaction medium is evaporated to dryness and the residue is taken up in saturated aqueous NaHCO3 solution and extracted with ethyl acetate. The organic phase is dried over magnesium sulfate and evaporated to dryness. The residue is purified by chromatography on silica gel (eluent: 50/50 EtOAc/heptane) to give 300 mg of 1-(5- methylpyrid-3-yl)ethanone, the characteristics of which are as follows: LC/MS (method G): ESI+ [M+H]+: m/z 136 tr (min) = 0.78 1H NMR (300 MHz, δ in ppm, DMSO-d6): 2.37 (s, 3H), 2.62 (s, 3H), 8.1 (s, 1 H), 8.63 (s, 1 H), 8.93 (s, 1 H).
  • 23
  • [ 3430-16-8 ]
  • [ 97674-02-7 ]
  • [ 42972-46-3 ]
YieldReaction ConditionsOperation in experiment
300 mg With bis-triphenylphosphine-palladium(II) chloride; potassium carbonate; In water; N,N-dimethyl-formamide; at 110℃; for 1.0h;Microwave irradiation; The following are successively introduced into a microwave tube: 484 μl (4.07 mmol) of 3-bromo-5-methylpyridine in 20 mL of H2O/DMF: (1/3: v/v), 2.03 mL (5.70 mmol) of tributyl(1-ethoxyvinyl)tin, 57.12 mg (0.081 mmol) of bis(triphenylphosphine)palladium(II) chloride, 1.12 g (8.14 mmol) of potassium carbonate. This mixture is subjected to microwave irradiation at 110 C. for 1 hour. The reaction mixture is evaporated to dryness and the residue is then taken up in water and extracted with ethyl acetate. The organic phase is dried over magnesium sulfate and evaporated to dryness. The residue obtained is taken up in 6 mL of methanol and 1 mL of 6 N HCl, and the solution is stirred overnight at room temperature. The reaction medium is evaporated to dryness and the residue is taken up in saturated aqueous NaHCO3 solution and extracted with ethyl acetate. The organic phase is dried over magnesium sulfate and evaporated to dryness. The residue is purified by chromatography on silica gel (eluent: 50/50 EtOAc/heptane) to give 300 mg of 1-(5-methylpyrid-3-yl)ethanone, the characteristics of which are as follows: LC/MS (method G): ESI+ [M+H]+: m/z 136 tr (min)=0.78 1H NMR (300 MHz, δ in ppm, DMSO-d6): 2.37 (s, 3H), 2.62 (s, 3H), 8.1 (s, 1H), 8.63 (s, 1H), 8.93 (s, 1H).
 

Historical Records

Technical Information

Categories

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[ 42972-46-3 ]

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