Structure of 348-37-8
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CAS No. : | 348-37-8 |
Formula : | C11H10FNO2 |
M.W : | 207.20 |
SMILES Code : | O=C(C(N1)=CC2=C1C=C(F)C=C2)OCC |
MDL No. : | MFCD03095203 |
InChI Key : | KOLXHQLPMICACW-UHFFFAOYSA-N |
Pubchem ID : | 15370496 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H317 |
Precautionary Statements: | P280 |
Num. heavy atoms | 15 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.18 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 54.34 |
TPSA ? Topological Polar Surface Area: Calculated from |
42.09 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.3 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.7 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.9 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.08 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.12 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.62 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.07 |
Solubility | 0.176 mg/ml ; 0.000848 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.24 |
Solubility | 0.12 mg/ml ; 0.00058 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.05 |
Solubility | 0.0185 mg/ml ; 0.0000891 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.65 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.97 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | General procedure: A mixture of compound 3a (33.5 g, 0.15 mol), 4% NaOH solution (335 mL) and ethanol (335 mL) was heated to reflux for 3 h. Upon cooling to room temperature, the mixture was poured into ice-water, adjusted to pH 5 with glacial acetic acid, and then the precipitate was collected by filtration. 4a was obtained as a white solid (26.4 g, 90%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A suspension of 7.9 g(197 mmol) of 60% sodium hydride and of 36.1 g (176 mmol) of m<strong>[348-37-8]ethyl 6-fluoro-1H-indole-2-carboxylate</strong> (obtained in stage 1.2.) in 250 ml of N,N-dimethylformamide is stirred for 2 h at ambient temperature. 12 ml (193 mmol) of iodomethane in 50 ml of N,N-dimethylformamide are subsequently added. The mixture is stirred at ambient temperature for 12 h. The above reaction medium is poured into a mixture of water and ice. Dichloromethane is added and the aqueous phase is neutralized with hydrochloric acid (1M). The organic phase is separated by settling, washed with water, dried over sodium sulphate, filtered and concentrated under reduced pressure. The residue is purified by chromatography on a column of silica gel with a mixture of solvents (cyclohexane/dichlormethane: 50/50; then dichloromethane/ethyl acetate: 100/0 to 70/30). 37.2 g (170 mmol) of a white compound formed of methyl 6-fluoro-1-methyl-1H-indole-2-carboxylate are isolated, comprising 10 to 20% of ethyl 6-fluoro-1-methyl-1H-indole-2-carboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; iron; In ethanol; water; at 0℃; for 5h;Heating / reflux; | 1.2. Methyl 6-fluoro-1H-indole-2-carboxylate A mixture of 35 g of potassium salt obtained in stage 1.1. in 500 ml of ethanol is cooled to approximately 0 C. 80 ml of concentrated hydrochloric acid are added in small portions. 35 g (627 mmol) of iron powder are also added portionwise. The mixture is heated at reflux for 5 h and then cooled and filtered. The solid obtained is rinsed with dichloromethane. The filtrate is concentrated under reduced pressure. The residue is purified by chromatography on a column of silica gel with a mixture of solvents (dichloromethane/ethyl acetate: 100/0 to 70/30). The chromatography fractions are partially concentrated. The solid which precipitates is collected by filtration, washed with cyclohexane and dried under reduced pressure. 18 g of a white solid formed of methyl 6-fluoro-1H-indole-2-carboxylate are obtained, comprising 10 to 20% of ethyl 6-fluoro-1H-indole-2-carboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With dmap; triethylamine; In dichloromethane; at 20℃; | (3-3) Ethyl 6-fluoro-1H-indole-2-carboxylate (1.70 g, 8.19 mmol) obtained in Reference Example (3-2) was dissolved in methylene chloride (82 ml) and triethylamine (4.55 ml, 32.8 mmol), di-tert-butyl dicarboxylate (3.57 g, 16.4 mmol) and N,N-dimethylaminopyridine (100 mg, 0.819 mmol) were added thereto at room temperature, followed by stirring overnight. Water and saturated aqueous NaCl solution were added to the reaction mixture and, after the mixture was extracted with methylene chloride, the organic layer was dried over anhydrous sodium sulfate. The residue obtained by evaporating the solvent under reduced pressure was purified by silica gel column chromatography (elution solvent: n-hexane/ethyl acetate=9/1) to obtain 1-tert-butyl 2-ethyl 6-fluoro-1H-indole-1,2-dicarboxylate as a yellow oil (1.94 g, yield: 95%). 1H-NMR (400MHz, CDCl3) : delta 7.77 (1H, dd, J = 10.2, 2.4 Hz) , 7.51(1H, dd, J = 8.6, 5.8 Hz), 7.05 (1H, s), 7.00 (1H, app. td, J = 9.0, 2.4 Hz), 4.36 (2H, q, J = 7.0 Hz), 1.63 (9H, s), 1.30 (3H, t, J = 7.0 Hz).; (9-7) Triethylamine (4.55 ml, 32.8 mmol), di-tert-butyl dicarbonate (3.57 g, 16.4 mmol) and N,N-dimethylaminopyridine (100 mg, 0.819 mmol) were added to a solution of <strong>[348-37-8]ethyl 6-fluoro-1H-indole-2-carboxylate</strong> (1.70 g, 8.19 mmol) obtained in Reference Example (9-6) in methylene chloride (82 ml) at room temperature, and the mixture was stirred overnight. Water and saturated aqueous NaCl solution were added to the reaction mixture and, after the mixture was extracted with methylene chloride, the organic layer was dried over anhydrous sodium sulfate. The residue obtained by evaporating the solvent under reduced pressure was purified by silica gel column chromatography (elution solvent: n-hexane/ethyl acetate=9/1) to obtain 1-tert-butyl 2-ethyl 6-fluoro-1H-indole-1,2-dicarboxylate as a yellow oil (1.94 g, yield: 95%). 1H-NMR (400MHz, CDCl3): delta 7.77 (1H, dd, J = 10.2, 2.4 Hz) , 7.51 (1H, dd, J = 8.6, 5.8 Hz), 7.05 (1H, s), 7.00 (1H, app td, J = 9.0, 2.4 Hz), 4.36 (2H, q, J = 7.0 Hz), 1.63 (9H, s), 1.30 (3H, t, J = 7.0 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With iron; In ethanol; acetic acid; for 3.5h;Heating / reflux; | (3-2) Ethyl 3-(4-fluoro-2-nitrophenyl)-2-oxopropanoate (5.51 g, 21.6 mmol) obtained in Reference Example (3-1) was dissolved in a mixed solvent of ethanol-acetic acid (1:1, 84 ml), and iron powder (10.9 g, 144 mmol) was added thereto, followed by heating under reflux for 3.5 hours. After the reaction mixture was diluted with tetrahydrofuran, the insolubles were filtered through Celite, and the residue obtained by concentrating the filtrate under reduced pressure was purified by silica gel column chromatography (elution solvent: methylene chloride/acetone=15/1) to obtain ethyl 6-fluoro-1H-indole-2-carboxylate (3.62 g, yield: 81%). 1H-NMR (400MHz, CDCl3): delta 8.89 (1H, br. s), 7.61 (1H, dd, J = 8.8, 5.5 Hz), 7.20 (1H, m), 7.09 (1H, dd, J = 9.4, 2.0 Hz), 6.94 (1H, ddd, J = 9.4, 8.8, 2.0 Hz), 4.41 (2H, q, J = 7.0 Hz), 1.42 (3H, t, J = 7.0 Hz).; (9-6) Ethyl 3-(4-fluoro-2-nitrophenyl)-2-oxopropanoate (5.51 g, 21.6 mmol) obtained in Reference Example (9-5) was dissolved in a mixed solvent of ethanol-acetic acid (1:1, 84 ml), and iron powder (10.9 g, 144 mmol) was added thereto, followed by heating under reflux of the mixture for 3.5 hours. The temperature of the reaction mixture was returned to room temperature, and the mixture was diluted with tetrahydrofuran. The insolubles were removed by filtration using Celite, and the filtrate was concentrated under reduced pressure. The thus obtained residue was purified by silica gel column chromatography (elution solvent: methylene chloride/acetone=15/1) to obtain ethyl 6-fluoro-1H-indole-2-carboxylate as yellow crystals (3.62 g, yield: 81%). 1H-NMR (400MHz, CDCl3) : delta 8.89 (1H, br. s), 7.61 (1H, dd, J = 8.8, 5.5 Hz), 7.20 (1H, m), 7.09 (1H, dd, J = 9.4, 2.0 Hz), 6.94 (1H, ddd, J = 9.4, 8.8, 2.0 Hz), 4.41 (2H, q, J = 7.0 Hz), 1.42 (3H, t, J = 7.0 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
EXAMPLE 1 Compound 1 7-fluoro-N,N,5-trimethyl-4-oxo-3-(pyridin-2-yl)-3,5-dihydro-4H-pyridazino[4,5-b]indole-1-acetamide 1.1. Methyl 6-fluoro-1-methyl-1H-indole-2-carboxylate A 60% suspension of 7.9 g (197 mmol) of sodium hydride (washed with petroleum ether beforehand) and 36.1 g (176 mmol) of m<strong>[348-37-8]ethyl 6-fluoro-1H-indole-2-carboxylate</strong> (containing 10 to 20% of <strong>[348-37-8]ethyl 6-fluoro-1H-indole-2-carboxylate</strong>) in 250 ml of N,N-dimethylformamide is stirred at ambient temperature for 2 h. Then 12 ml (193 mmol) of iodomethane in 50 ml of N,N-dimethylformamide are added and the mixture is stirred at ambient temperature for 12 h. The contents are poured into an ice/water mixture. Dichloromethane is added and the aqueous phase is neutralized with hydrochloric acid (1N). The organic phase is separated off, washed with water, dried over sodium sulfate, filtered and concentrated under reduced pressure. The residue is purified by chromatography on a silica gel column in a mixture of solvents (cyclohexane/dichloromethane: 50/50 to 0/100 then dichloromethane/ethyl acetate: 100/0 to 70/30). 32.7 g (170 mmol) are isolated of a white compound of methyl 6-fluoro-1-methyl-1H-indole-2-carboxylate containing 10 to 20% of ethyl 6-fluoro-1-methyl-1H-indole-2-carboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In hexane; at 200℃; under 9000.9 - 9750.98 Torr; for 0.0833333h;Microwave irradiation; Inert atmosphere; | General procedure: Sodium (4.0 equiv) was dissolved in absolute ethanol (0.5 mL/mmol) and the solution was cooled to -10 C in an ice/acetone bath. A corresponding benzaldehyde (1.0 equiv) was dissolved in a commercial 25% solution of ethyl azidoacetate in ethanol (2.1 g per mmol of starting benzaldehyde, 4.0 equiv) and this solution was added dropwise to the sodium ethoxide solution during 30 min while the bath temperature was kept at -10 C. The reaction mixtures typically turned into bright yellow suspensions. The stirring was continued until TLC (developing with 15% EtOAc in cyclohexane) indicated completion or the reaction (1.5-2.5 h). If the reaction required more than 1.5 h, the temperature was allowed to rise to 0 C. In one case (5r), the reaction had to be run overnight. The mixtures were partitioned between ethyl acetate and water. The aqueous phase was extracted twice with ethyl acetate and the organic layers were pooled, washed with brine, dried over magnesium sulfate, and concentrated under reduced pressure to provide crude azidoacrylic esters (5) as yellow to orange oils or liquids in a 46-100% yield. These products were suspended in n-hexane (6-9 mL/mmol of crude azidoacrylic ester) and subjected to microwave heating at 200 C for 5 min (P = 100-140 W, p = 12-13 bar). The resulting residues were taken into ethyl acetate and evaporated with silica gel. The corresponding indolic esters 3 (yields 19-93%) were purified by chromatography. In one case, a mixture of isomers was obtained. 2-Azido-3-(3-methoxyphenyl)-acrylic acid ethyl ester gave 5-methoxy-1H-indole-2-carboxylic acid ethyl ester (3j) and 7-methoxy-1H-indole-2-carboxylic acid ethyl ester (3q) in a 1:1 ratio (each in a 47% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | General procedure: An oven-dried flask was purged with argon while hot, then allowed to cool down to room temperature under argon and charged with dry THF (2 mL/mmol of starting indole 3/6) and diisopropylamine (4.0 equiv). The solution was cooled to -78 C in a dry ice/isopropanol bath and n-butyl lithium, 1.6 M solution in hexanes (4.0 equiv), was added to give a bright yellow solution. The mixture was stirred for 30 min below -60 C whereupon a solution of picoline or another appropriate reagent with an ionizable methyl(ene) group (4.0 equiv) in THF (2 mL/mmol of starting indole 3 or 6) was added to give a yellow to red colored mixture. During a further 30 min, the bath temperature was allowed to rise to approx. 0 C during which time the reaction mixture became a yellow to red suspension. The temperature was then kept at 0 C (using an ice/water bath) for an additional 30 min. At this point, a solution of the indole-2-carbonyl compound 3/6 (1.0 equiv) in THF (4 mL/mmol) was added dropwise over the flask wall. The reaction mixture darkened (dark purple to dark brown color in most cases) and was then allowed to attain room temperature overnight. At 18 h (unless otherwise stated) after the addition of the indole component, the reaction was quenched with saturated aqueous ammonium chloride solution (10 mL/mmol of starting compound 3/6) and stirred for several minutes. Upon partition between ethyl acetate and water, the aqueous phase was extracted twice with dichloromethane and the combined organic layers were dried over MgSO4. The title products were purified by chromatography (the products typically eluted with 70-80% of ethyl acetate). The products were then precipitated by concentration of the pooled column fractions combined with the addition of cyclohexane. The precipitates formed were filtered off, washed twice with cyclohexane and dried at 40 C in vacuo to yield analytically pure samples. The following compounds were prepared in this way: |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | In 5,5-dimethyl-1,3-cyclohexadiene;Reflux; | A solution of compound 8c (35.3 g, 0.15 mol) in xylene (350 mL) was heated to reflux for 3-5 h and then the solvent was removed under reduced pressure to form a light yellow solid. The crude product was purified by recrystallization from toluene and 3c was obtained as a yellow solid (16.1 g, 52%). m.p. 147-148 C. ESI-MS m/z: 206.1 [M - H]-. 1H NMR (300 MHz, DMSO-d6) delta: 1.33 (t, J = 6.9 Hz, 3H), 4.37-4.30 (q, J1 = 6.9 Hz, J2 = 14.1 Hz, 2H), 6.99-6.92 (m, 1H), 7.17-7.14 (m, 2H), 7.71-7.66 (m, 1H), 11.95 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21% | With magnesium oxide; Selectfluor; In acetonitrile; at 20℃; | Intermediate 673,6-Difluoro-lH-indole-2-carboxylic acid[0355][Chemical Formula 98]Ethyl 6-Fluoroindole-2-carboxylate (0.48 mmol, 0.10 g) was dissolved in acetonitrile (5 mL). To the solution was added magnesium oxide (0.96 mmol, 0.039 g) at room temperature. To the mixture was added Selectfluor (0.58 mmol, 0.21 g) gradually at room temperature, and stirred overnight at room temperature. The mixture was dried under reduced pressure, and purified with silica gel column chromatography (amine silica gel) (hexane/ethyl acetate = 100/0- >5/l) to give a 22.5 mg of white solid (yield 21%). The solid was dissolved in ethanol (1 mL). To the solution was added aqueous lithium hydroxide solution (2 M, 0.3 mmol, 0.15 mL) at room temperature, and stirred overnight at room temperature. The mixture was dried under reduced pressure, and the residuum was dissolved in water. To the solution was added aqueous hydrochloric acid solution (1 M), and the precipitated solid was collected by filtration to give the title compound (14.7 mg, yield 75%). MS (ESI+) 198 (M++1, 14%) [0356] |
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