Structure of 26163-07-5
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CAS No. : | 26163-07-5 |
Formula : | C7H9BrN2 |
M.W : | 201.06 |
SMILES Code : | CN(C)C1=NC=C(Br)C=C1 |
MDL No. : | MFCD00099486 |
InChI Key : | XIMCGXXYEMOWQP-UHFFFAOYSA-N |
Pubchem ID : | 3803041 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.29 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 46.14 |
TPSA ? Topological Polar Surface Area: Calculated from |
16.13 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.03 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.0 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.91 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.65 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.56 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.83 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.72 |
Solubility | 0.379 mg/ml ; 0.00189 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.97 |
Solubility | 2.18 mg/ml ; 0.0108 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.99 |
Solubility | 0.204 mg/ml ; 0.00102 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.11 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.85 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With dihydrogen peroxide; 1-butylpyridinium bromide; toluene-4-sulfonic acid; In 1,2-dimethoxyethane; at 80℃; for 24h;Schlenk technique; Inert atmosphere; Green chemistry; | General procedure: To a mixture of 2-aminopyridine (0.5 mmol, 1 equiv), p-TSA (0.4 mmol,0.8 equiv), 1-butylpyridinium bromide (1.5 mmol, 3 equiv) in a 50 mL Schlenk tube were added 1,2-dimethoxyethane (2 mL) under air. Then H2O2 (1.2 mmol, 2.4 equiv) was added. The mixture was stirred at 80C for 24 h. And then the mixture was purified by silica gel column chromatography (petroleum ether/ethyl acetate) to give the products. |
64% | With N-Bromosuccinimide; In dichloromethane; for 0.166667h; | N-Bromosuccinimide (190 mmol) was added portionwise to a solution of [2- (DIMETHYLAMINO)-PYRIDINE] (200 mmol) in DCM (1.0 L). After 10 min a HPLC- MS indicated complete conversion. The solvent was removed in vacuo and the residue was purified by flash-chromatography (ethyl acetate/heptane 1: 19) to give 25.7 g [(128] mmol, [64%)] of the desired arylbromide as a white solid. LC-MS: rt = 0.46 min, [201] (M+1, ES+). |
With N-Bromosuccinimide; ammonium acetate; In acetonitrile; at 20℃; | [00158] Pyri(mi)dyl bromides were commercially available (e.g. from SigmaAldrich) (Oakville, Ontario, Canada) or were prepared from commercially available pyridines or pyrimidines (10 mmol) in MeCN (40 mL) at room temperature in the presence of NH OAc (1.0 mmol) and NBS (10.5 mmol), as suggested by Das and co-workers (Das, B.; Venkatswarlu, K.; Majhi, A.; Siddaiah, V.; Reddy, K. J. Mol. Cat. A 2007, 267, 30-33). Reactions were monitored by thin layer chromatography (TLC) and typically were complete within minutes. After removal of acetonitrile in vacuo, water was added (100 mL) and the mixture extracted with EtOAc (3 x 50 mL). Non aqueous layers were combined and washed with 50 mL brine and dried over MgS04. Products were used without further purification. [00172] Compound 27 was prepared in 94% yield from 2-(/V,/V-dimethylamino)-5- bromopyridine (prepared as in Example 5, see also: Nara, S. J.; Jha, M.; Brinkhorst, J.; Zemanek, T. J.; Pratt, D. A. J. Org. Chem. 2008, 73, 9326) and aniline (Aldrich) as outlined in Example 3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(B) 6-(di methylami no)pyridi n-3-ylboronic acid[096] A solution of <strong>[26163-07-5]5-bromo-N,N-dimethylpyridin-2-amine</strong> (500 mg, 2.5 mmol) in THF (10 mL) was treated with n-BuLi (1 .2 mL, 3 mmol) at -72 C for 2 hours.Triisopropyl borate (705 mg, 3.75 mmol) was then added dropwise. After the completion of the addition, the mixture was stirred at -72 C for an additional 1 hour and slowly warmed up and stirred at the ambient temperature overnight. MeOH was carefully added, and the volatiles were removed under reduced pressure to give the title compound. MS (m/z): 187 (M+H)+. | ||
A solution of <strong>[26163-07-5]5-bromo-N,N-dimethylpyridin-2-amine</strong> (500 mg, 2.5 mmol) in THF (10 mL) was treated with n-BuLi (1.2 mL, 3 mmol) at -72 C. for 2 hours. Triisopropyl borate (705 mg, 3.75 mmol) was then added dropwise. After the completion of the addition, the mixture was stirred at -72 C. for an additional 1 hour and slowly warmed up and stirred at the ambient temperature overnight. MeOH was carefully added, and the volatiles were removed under reduced pressure to give the title compound. MS (m/z): 167 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In water;Reflux; | (A) 5-bromo-/V,/V-di methyl pyridi n-2-ami ne[095] A solution of 2,5-dibromopyridine (10 g, 42.3 mmol) in aqueousdimethylamine (50 mL) was refluxed overnight. The volatiles were removed in vacuo, and the residue was treated with EtOAc/PE. The precipitates were collected by filtration and dried to give the title compound. MS (m/z): 201 (M+H)+, 203 (M+H)+. | |
In water;Reflux; | A solution of 2,5-dibromopyridine (10 g, 42.3 mmol) in aqueous dimethylamine (50 mL) was refluxed overnight. The volatiles were removed in vacuo, and the residue was treated with EtOAc/PE. The precipitates were collected by filtration and dried to give the title compound. MS (m/z): 201 (M+H)+, 203 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21% | With n-butyllithium; sulfur; In tetrahydrofuran; hexane; at -78℃; for 0.433333h; | [AT-78C] a solution of [(5-BROMO-PYRIDIN-2-YL)-DIMETHYL-AMINE] (15.0 mmol) in THF (50 mL) was added dropwise to a solution of n-BuLi in Hexane (1.6 [MOVL,] 10.0 mL). The reaction mixture was stirred for 15 min and sulfur (20.0 mmol) was added. After 1 min a solution of n-BuLi in Hexane (1.6 mol/L, 20.0 ml) was added. The reaction mixture was stirred for 10 min at-78C and purified immediately by flash-chromatography (ethyl acetate/heptane 1: 3) without previous work-up. A second flash-chromatography (gradient: ethyl [ACETATE/HEPTANE] 1: 19 to 1: 9) yielded 0.50 g (3.24 mmol, 21%) of 6-dimethylamino-pyridine-3-thiol as a yellow oil. LC-MS: rt = 0.46 min, 155 [(M+1,] ES+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43% | 37 % Aqueous formaldehyde (13.55 ml, 180.3 mmol) was added dropwise to a solution of 2-amino-5-bromopyrydine (2.0 g, 11.56 mmol) in methanol (465 ml)at room temperature. To the mixture was added dropwise a solution of zinc chloride (3.94 g, 28.90 mmol) and sodium cyanoborohydride (3.63 g, 57.80 mmol) in methanol (155 ml)and the mixture was stirred at room temperature for 4 hrs. To the reaction mixture was added ice water (300 ml) at 5 C and then methanol was distilled off under reduced pressure. The residue was extracted with ethyl acetate - tetrahydrofuran (1/1) and the extract was washed with water and brine in turn and dried. The solvent was distilled off under reduced pressure. The residue was purified by column chromatography on silica gel (n-hexane/ethyl acetate = 24 and 5) to give 5-bromo-2-dimethylamino-pyridine (1.00 g, 43 %) as colorless crystals. m.p.: 39 - 41 C; IR (Nujol): 1588 cm-1; APCI-MS m/z: 201/203 [M+H]+. | |
43% | With sodium cyanoborohydride; zinc(II) chloride; In methanol; water; at 20℃; for 4h; | (Preparation 27) (0109) 1) 37% Aqueous formaldehyde (13.55 ml, 180.3 mmol) was added dropwise to a solution of 2-amino-5-bromopyrydine (2.0 g, 11.56 mmol) in methanol (465 ml)at room temperature. To the mixture was added dropwise a solution of zinc chloride (3.94 g, 28.90 mmol) and sodium cyanoborohydride (3. 63 g, 57.80 mmol) in methanol (155 ml) and the mixture was stirred at room temperature for 4 hrs. To the reaction mixture was added ice water (300 ml) at 5 C. and then methanol was distilled off under reduced pressure. The residue was extracted with ethyl acetate-tetrahydrofuran (1/1) and the extract was washed with water and brine in turn and dried. The solvent was distilled off under reduced pressure. The residue was purified by column chromatography on silica gel (n-hexane/ethyl acetate=24 and 5) to give 5-bromo-2-dimethylamino-pyridin- e (1.00 g, 43%) as colorless crystals. m.p.: 39-41 C.; IR (Nujol): 1588 cm-1; APCI-MS m/z: 201/203 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
88% | With sodium hydride; In tetrahydrofuran; at 50℃;Reflux; | General procedure: To a solution of 5-bromo-2-aminopyri(mi)dine (1.0 mmol) in dry THF (2 mL) at 50C, NaH (2.2 mmol) was added slowly and the mixture was stirred until H2 evolution ceased. Alkylbromide (2.1 mmol) was then added and the reaction was refluxed overnight. The reaction was cooled, quenched with MeOH and extracted with Et20. Thecombined organics were washed with brine and dried over MgSO4. The oil obtained was passed through a plug of silica (Et20/hexanes) to obtain pure products.5-Bromo-N,N-dihexylpyridin-2-amine (8). Compound 8 was synthesized according to the general alkylation procedure listed above. 1-Bromohexane was used as thealkylbromide of choice. Yield: quantitative |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72.0% | With sodium thiosulfate; In chloroform; water; | Example 191-1 Synthesis of 5-bromo-2-dimethylaminopyridine 2-Dimethylaminopyridine (1.0 ml) was dissolved in chloroform (60 ml). After adding tributylammonium bromide (3.88 g) thereto, the resultant mixture was stirred for 7 min. Then the reaction solution was washed with an aqueous solution of sodium thiosulfate and water, dried over anhydrous sodium sulfate and concentrated under reduced pressure. The residue was purified by silica gel column chromatography (hexane/ethyl acetate-methanol system) to give the title compound (1.097 g) as yellow crystals (yield: 72.0%). 1H-NMR (400 MHz, CDCl3): delta(ppm) 3.05(6H, s), 6.40(1H, dd, J=0.8, 8.8Hz), 7.48(1H, dd, J=2.8, 8.8Hz), 8.16(1H, dd, J=0.8, 2.8Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89.6% | In diethyl ether; N,N-dimethyl-formamide; | Example 191-2 Synthesis of 2-dimethylamino-5-formylpyridine Tetramethylethylenediamine (8.0 ml) was added to the mixture of <strong>[26163-07-5]5-bromo-2-dimethylaminopyridine</strong> (5.0 g), N,N-dimethylformamide (6.1 ml) and diethyl ether employed as the solvent. The resultant mixture was treated in as in Example 93 to give the title compound (3.273 g) as pale yellow crystals (yield: 89.6%). 1H-NMR (400 MHz, CDCl3): delta(ppm) 3.21(6H, s), 6.56(1H, dd, J=0.4, 9.2Hz), 7.91(1H, dd, J=2.4, 9.2Hz), 8.55(1H, dd, J=0.4, 2.4Hz), 9.77(1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With dimethyl amine; In tetrahydrofuran; | A. 5-Bromo-2-(dimethylamino)pyridine A solution of 2,5-dibromopyridine (11.84 g, 50.0 mmol) in 2.0 M solution of dimethylamine in tetrahydrofuran (100 mL) in a sealed tube was heated at 120 C. for 12 hours. The reaction was quenched with ethyl acetate and washed with water. The organic layer was dried over magnesium sulfate, filtered, and concentrated. The residue was then purified by chromatography (SiO2, 10-15% ethyl acetate/hexane) to provide the title compound (8.67 g, 86% yield): 1H NMR (CDCl3) 8.16 (d, 1H), 7.49 (dd, 1H), 6.41 (d, 1H), 3.05 (s, 6H); ES-MS m/z 201 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | tetrakis(triphenylphosphine)palladium (0); In toluene; | B. 2-(Dimethylamino)-5-(tributylstannyl)pyridine A mixture of 5-bromo-2-(dimethylamino)pyridine (0.71 g, 3.5 mmol), bis(tributyltin) (2.436 g, 4.2 mmol), and tetrakis(triphenylphosphine)palladium(0) (0.404 g, 0.35 mmol) in toluene (20 mL) was heated at 120 C. overnight. The reaction was concentrated and purified by chromatography (SiO2, 10% ethyl acetate/hexane) to provide the title compound (0.798 g, 55% yield): 1H NMR (CDCl3) 8.16 (dd, 1H), 7.49 (dd, 1H), 6.53 (dd, 1H), 3.07 (s, 6H), 1.28-1.70 (m, 18H), 0.85-0.95 (m, 9H); ES-MS m/z 411 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
34% | With NaH; In N,N-dimethyl-formamide; mineral oil; | a) 5-Bromo-2-(methylamino)pyridine and 5-bromo-2-(dimethylamino)pyridine To a suspension of NaH (60% dispersion in mineral oil, 0.44 g, 11 mmole) in dry DMF (40 mL) was added solid 2-amino-5-bromopyridine (1.73 g, 10 mmole) in portions over 5-10 min. Gas evolution was allowed to subside between additions. The resulting amber mixture was stirred for 15 min, then' methyl iodide (0.61 mL, 10 mmole) was added all at once. The reaction mixture was stirred at RT overnight, then was concentrated in vacuo. The residue was diluted with 5% NH4Cl (30 mL) and the mixture was extracted with CH2Cl2. The combined organic extracts were washed with brine, dried (MgSO4), and concentrated. Flash chromatography on silica gel (3% MeOH/CH2Cl2) separated the products. 5-Bromo-2-(methylamino)pyridine (0.60 g, 32 %) was obtained as a semisolid: TLC (3% MeOH/CH2Cl2) Rf 0.35; MS (ES) m/e 187 (M + H)+. 5-Bromo-2-(dimethylamino)pyridine (0.70 g, 34%) was obtained as a semisolid: TLC (3% MeOH/CH2Cl2) Rf 0.77; MS (ES) m/e 201 (M + H)+. |
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