Structure of 167298-40-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 167298-40-0 |
Formula : | C10H17NO3 |
M.W : | 199.25 |
SMILES Code : | O=C(OC(C)(C)C)N[C@@H]1CC(CC1)=O |
MDL No. : | MFCD18089809 |
InChI Key : | CLOXAWYNXXEWBT-ZETCQYMHSA-N |
Pubchem ID : | 45091924 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 52.78 |
TPSA ? Topological Polar Surface Area: Calculated from |
55.4 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.06 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.81 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.63 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.76 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.18 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.29 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.32 |
Solubility | 9.5 mg/ml ; 0.0477 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.56 |
Solubility | 5.55 mg/ml ; 0.0279 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.88 |
Solubility | 2.61 mg/ml ; 0.0131 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.94 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.55 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Preparation 45 (S)-(3-Oxocyclopentyl)carbamic acid 1,1-dimethylethyl ester 2.5M n-Butyllithium in hexane (5.83 ml) was added dropwise to a stirred solution of 1,1,1,3,3,3-hexamethyldisilazane (3.16 ml, 15 mmol) in tetrahydrofuran (30 ml) at 4 C. After 20 min the solution was cooled to -60 C. and (S)-3-[[(1,1-dimethylethoxy)carbonyl]amino]-hexanedioic acid 1-methyl 6-(phenylmethyl) ester (1.522 g, 4.16 mmol) in tetrahydrofuran (10 ml) was added dropwise over 5 min. The solution was stirred for 10 min before the addition of pH7 buffer (5 ml) and the mixture was then diluted with dichloromethane (200 ml) and pH7 buffer (300 ml). The aqueous phase was adjusted to pH6.5 with 2M hydrochloric acid and then the organic phase was separated. The aqueous phase was extracted with dichloromethane (2*200 ml) and the combined organic phase was dried (MgSO4) then evaporated to leave a solid. The solid was dissolved in ethanol (45 ml) and hydrogenated over 10% palladium-on-carbon (0.5 g) for 4 h. The hydrogen was replaced by nitrogen and the reaction was stirred for a further 18 h then filtered through celite and the pad was washed with ethanol. The filtrate and washings were combined and evaporated to leave a solid which was purified by column chromatography on flash silica eluding with 25-40% ethyl acetate in cyclohexane to give the title compound (0.437 g) as a white solid which crystallized from isopropyl ether, m.p. 97-98 C., [alpha]D -48 (CHCl3 c=0.52%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; cyclohexane; water; | Preparation 46 (1S-trans)-(3-Hydroxycyclopentyl)carbamic acid 1,1-dimethylethyl ester A 1M solution of lithium tris(1,2-dimethylpropyl)borohydride in tetrahydrofuran (1.99 ml) was diluted with tetrahydrofuran (3 ml), cooled to -78 C. and treated dropwise with a solution of (S-3-oxocyclopentyl)carbamic acid 1,1-dimethylethyl ester (0.38 g, 1.66 mmol) in dry tetrahydrofuran (2 ml) at 0 C. The reaction was stirred for 2 h at -78 C. then allowed to warm to room temperature over 1 h. Water (2 ml) was added dropwise then the mixture was diluted with water (20 ml) and ethyl acetate (30 ml). The organic phase was washed with water (20 ml), dried (MgSO4) and evaporated to give impure product which was purified by chromatography on flash silica eluding initially with 15% ethyl acetate in cyclohexane and progressing to neat ethyl acetate. Early fractions gave (1S-cis)-(3-hydroxycyclopentyl)carbamic acid 1,1-dimethylethyl ester (0.16 g) as an oil, nmr (d,CDCl3) 1.43(s,9H), 1.50-2.10(m,6H), 3.97-4.10(m,1H), 4.32-4.40(m,1~H), 5.00-5.12(m,1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The HCl form of the intermediate in example 1 step E (72mg, 0.1529mmol) in 2.5mL 1,2-dichloroethane was treated with 98.8mg diisopropylethylamine (0.7645mmol). After 5 minutes, 35mg of tert-butyl [(16)-3-oxocyclopentyl]carbamate (0.1759mmol) and 49mg sodium triacetoxyborohydride (0.2293mmol) were added. The reaction was quenched with a saturated solution of NaHCO3. After 20 min, the aqueous layer was extracted several times with EtOAc. The combined organic layers were washed with brine and dried over Na2SO4, filtered, and concentrated in vacuo. The crude residue was purified on silica gel plates and eluted with 70/15/13/2 EtOAc/acetonitrile/ H2theta/methanol. The faster moving diastereomer was called Dl and the slower moving diastereomer was called D2. MS: Dl(MH)+ 619; D2(MH)+ 619. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
330 mg; 102 mg | With lithium hexamethyldisilazane; at -78 - 20℃; | Example 25 A THF (17 mL) solution of (fluoromethylsulfonyl)benzene (852.4 mg, 4.9 mmol) was treated drop-wise with 1 M LiHMDS/THF (4.8 mL, 4.8 mmol) at -78 C followed by the drop-wise addition of a THF (3mL) solution of compound 11 (440 mg, 2.21 mmol). Initial evaluation of reaction progress by silica gel TLC after 67 min. indicated significant 1 remained. The reaction was warmed slightly before recooling to -78 C and adding additional LiHMDS (2.4 mL) solution drop-wise and allowing the reaction bath to warm to ambient temperature, at which time the reaction had consumed all of compound 1 . After the addition of 1 mL of HOAc and an approximately equal volume of THF the reaction was evaporated (in vacuo) at 30 C before partitioning between DCM and water. Combined DCM phases after an extraction of the initial aqueous phase with DCM were washed with brine, dried Na2SO4, and evaporated. Isolation and purification of compound 2 was accomplished via flash chromatography (silica gel, DCM/ethyl acetate) affording 330 mg. An alternate isomer (presumed trans) was further eluted affording 102 mg. H and 9F spectra (CDCI3) were consistent with expectations. |
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