Structure of 151978-58-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 151978-58-4 |
Formula : | C11H19NO2 |
M.W : | 197.27 |
SMILES Code : | O=C(OC(C)(C)C)NCCCCC#C |
MDL No. : | MFCD18839148 |
InChI Key : | QUIDQZORWGPNKV-UHFFFAOYSA-N |
Pubchem ID : | 11830384 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.73 |
Num. rotatable bonds | 7 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 57.67 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.33 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.8 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.22 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.39 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.29 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.0 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.34 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.0 |
Solubility | 1.97 mg/ml ; 0.01 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.66 |
Solubility | 0.432 mg/ml ; 0.00219 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.54 |
Solubility | 0.572 mg/ml ; 0.0029 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.93 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.48 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
a) 1-(3-nitrobenzyl)-4-(2-carboxyethyl)-7-(N-boc-6-amino-1-hexynyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester was prepared using the method described in part (f) of example 1. Thus, from 0.26 grams of 1-(3-nitrobenzyl)-4-(2-carboxyethyl)-7-iodo-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester and 0.19 grams of N-boc-6-amino-1-hexyne was prepared 226.3 mgs (78percent) 1-(3-nitrobenzyl)-4-(2-carboxyethyl)-7-(N-boc-6-amino-1-hexynyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester (TLC, SiO2, 1:1 ethyl acetate/hexane, Rf =0.34, upsilonnu positive). 1 H NMR (CDCl3, deltaTMS) 8.09 [1H, dt, 3 JHH =7 Hz, 4 JHH =2 Hz, NCH2 (C4-Ar-H)], 8.02 [1H, bs, NCH2 (C2-Ar-H)], 7.83 (1H, d, 4 JHH =2 Hz, o-CON), 7.50-7.35 [ 3H, m, NCH2 (C5, C6-Ar-H), Ar-H p-CON], 7.05 (1H, d, 3 JHH =8 Hz, Ar-H m-CON), 5.22 (1H, d, 2 JHH =16 Hz, NCHHAr), 5.02 (1H, d, 2 JHH =16 Hz, NCHHAr), 4.60 (1H, bs, BocNH), 4.20-4.08 (3H, m, NCHHCO, OCH2), 4.0-3.8 (3H, m, NCH2 CH2, NCHHCO), 3.16 (2H, q, 3 JHH =6 Hz, BocNHCH2), 2.72 (1H, dt, 2 JHH =16 Hz, 3 JHH =8 Hz, CHHCO2), 2.62 (1H, dt, 2 JHH =16 Hz, 3 JHH =8 Hz, CHHCO2), 2.39 (2H, t, 3 JHH =6 Hz, C.integral.CCH2), 1.60 (4H, bs, CH2 CH2 CH2 CH 2), 1.41 (9H, s, t-Bu), 1.24 (3H, t, 3 JHH =7 Hz, CH3). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.124 grams (84%) | e) 1-(methyl)-4-(2-carboxyethyl)-7-(N-boc-6-amino-1-hexynyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester was prepared using the method described in part (f) of example 1. Thus, 0.126 grams of 1-methyl-4-(2-carboxyethyl)-7-iodo-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester and 0.119 grams of N-boc-6-amino-1-hexyne yielded 0.124 grams (84percent) 1-(methyl)-4-(2-carboxyethyl)-7-(N-boc-6-amino-1-hexynyl)-3,4-dihydro-1H-1,4-benzodiazepine-2,5-dione ethyl ester (TLC, SiO2, 1:1 ethyl acetate/hexane, Rf =0.36, upsilonnu positive). 1 H NMR (CDCl3, deltaTMS) 7.84 (1H, d, 4 JHH =2 Hz, Ar-H o-CON), 7.47 (1H, dd, 4 JHH =2 Hz, 3 JHH =9 Hz, Ar-H p-CON), 7.07 (1H, d, 3 JHH =9 Hz, Ar-H m-CON), 4.60 (1H, bs, NH), 4.12 (2H, q, 3 JHH =7 Hz, OCH2), 4.0 (1H, d, 2 JHH =15 Hz, NCHHCO), 3.90 (2H, t, 3 JHH =7 Hz, NCH2), 3.84 (1H, d, 2 JHH =15 Hz, NCHHCO), 3.26 (3H, s, NCH3), 3.15 (2H, q, 3 JHH =7 Hz, BocNHCH2), 2.73 (1H, dt, 2 JHH =16 Hz, 3 JHH =9 Hz, CHHCO2), 2.63 (1H, dt, 2 JHH =16 Hz, 3 JHH =9 Hz, CHHCO2),2.40 (2H, t, 3 JHH =6 Hz, C.integral.CCH2), 1.62 (4H, m, CH2 CH2 CH2 CH2), 1.24 (3H, t, 3 JHH =7 Hz, CH3). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.831 g | With sodium hydrogencarbonate; In tetrahydrofuran; water; at 0 - 20℃; for 2h;Inert atmosphere; | N-(5-hexynyl)phthalimide (4.66 g, 20.5 mmol) was dissolved in THF (250 ml) and hydrazine hydrate (410 mmol, 19.8 ml) was added. The obtained solution was refluxed for 3 h, forming a white precipitate after 1h. After the reaction was finished it was cooled down to 8°C and filtered. The filtrate was evaporated to obtain the crude amine 8 as yellow liquid. The crude amine was dissolved in THF (14 ml) and water (14 ml) was added followed by NaHCO3 (2.27 g, 27.0 mmol). The solution was cooled to 0°C and Boc2O (2 M in THF, 8.09 ml; 16.2 mmol) was added via a syringe. The temperature was maintained for 15 min before removing the ice-bath. After 2h at rt the reaction was diluted with EtOAc. It was washed with water, sat. NaHCO3 aq and brine. Drying and evaporation gave a crude oil that was purified on silica with CyHex/EtOAc (92/8) resulting in 1.831g (45percent) 9 as pale yellow oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With copper(I) bromide; In toluene; at 60℃; for 48h;Inert atmosphere; Glovebox; Molecular sieve; | General procedure: #10;Method A (non-diazirine modulators): Inside a glovebox under N2-atmosphere, a pressure tight vial was charged with aldehyde (1 eq.), amine (2 eq.) and the respective terminal alkyne (2 eq.). CuBr (3 eq.) was added, followed by activated 4A molecular sieves (~1 g per 10 ml solvent). Toluene (7 ml/mmol aldehyde) was added and the reaction mixture heated to 90° C under vigorous stirring for 24 h. The crude reaction mixture was filtered twice through celite and a silica pad eluting with EtOAc (for biotin containing compounds 5percent MeOH in DCM was used). After evaporation of the organic solvents, the crude extracts were purified by silica-gel chromatography or preparative HPLC as described below and in the supporting information. Method B (diazirine modulators): An equivalent setup as described above was used reducing the reaction temperature to 60 °C and prolonging the reaction time to 48 h. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56% | With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine; at 70℃; for 3h;Inert atmosphere; | Compound (4a) (0.7 g, 2.0 mmol),Tert-butyl-5-yn-1-ylcarbamate (0.8 g, 4.0 mmol),CuI(76 mg, 0.4 mmol), Pd(PPh3)2Cl2 (140 mg, 0.2 mmol).5.0 mL of triethylamine was added under nitrogen. Reaction at 70 C for 3 h,Cooling and filtration, adding 100 mL of water, extracting 100 mL×3 of ethyl acetate, and combining the organic phases to dryness, siliconColumn chromatography (ethyl acetate) gave compound (4b) 0.5 g, yield 56% |
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