Structure of 14381-51-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Clara Stuedemann ;
Abstract: Crystal engineering allows researchers to predict and modulate the behavior of molecules leading to improvement of physical properties without changing the intrinsic structure of the molecules. Recent methods of synthesis in the solid state use mechanochemistry to promote the self-assembly of cocrystals. Advantages of solid-state synthesis include meeting several of the 12 principles of green chemistry. Most notably, solid-state synthesis reduces derivatives, minimizes waste, and uses minimal solvent. This thesis work describes two sets of results. The first project involves three cocrystals of the anticancer agent 5-fluorouracil (5-fu): (5-fu)·(3,3’-bpe), (5-fu)·(4,4’-bpe), and a new polymorph of 2(5-fu)·(2,2’-bpe). We explored possible solvent effects on the two forms of 2(5-fu)·(2,2’-bpe) and report that methanol, 1:1 methanol:ethanol, acetonitrile and ethyl acetate yielded the previously reported form I while ethanol, hexane, isopropyl, and chloroform resulted in form II. Water is also reported as a unique solvent as it produced a mixture of both forms. In the second part of this thesis, we describe the discovery of three novel cocrystals, (3CC)·(2,2’-bpe) and 3(3CC)·2.5(2,2’-bpe) using 3-chlorocatechol (3CC); and 3-bromocatechol (3BC), (3BC)·(2,2’-bpe) as unsymmetrical templates for potential [2+2] photocycloadditions in the solid state. The products were analyzed using powder and single X-ray diffraction (PXRD and SCXRD)
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CAS No. : | 14381-51-2 |
Formula : | C6H5BrO2 |
M.W : | 189.01 |
SMILES Code : | C1=CC=C(Br)C(=C1O)O |
MDL No. : | MFCD00869768 |
InChI Key : | JPBDMIWPTFDFEU-UHFFFAOYSA-N |
Pubchem ID : | 26659 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 38.19 |
TPSA ? Topological Polar Surface Area: Calculated from |
40.46 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.4 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.31 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.86 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.58 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.58 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.75 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.96 |
Solubility | 0.207 mg/ml ; 0.0011 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.8 |
Solubility | 0.301 mg/ml ; 0.00159 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.1 |
Solubility | 1.5 mg/ml ; 0.00793 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
Yes |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.81 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
1.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.38 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With aluminum (III) chloride; In toluene; for 3h;Heating / reflux; | To 2,3-dimethoxy-bromobenzene (8.2 g, 0.45 moles) in 50 ML of toluene was added AlCl3 (22.1 g, 0.178 moles).. The reaction mixture was refluxed for 3 hours, cooled, poured into 800 ML of water, and extracted with 800 ML of ether.. The ether extracts were dried over magnesium sulfate, filter and the solvent removed under reduced pressure.. The residue was chromatographed on silica gel, eluted with methylene chloride and the fraction were combined and evaporated under reduced pressure to yield 2,3-dihydroxy-bromobenzene (6.1 g, 73percent yield). |
The l-bromo-2,3-dimethoxybenzene (2.17 g, 10 mmol) was dissolved in DCM (60 ml) and treated with 1.0 M DCM solution OfBBr3 (15 mL, 15 mmol) at 0 °C and then allowed to warm to room temperature. After stirring overnight, the reaction mixture was cooled to 0 0C, 2 mL of MeOH was added, and the solvent was removed under vacuum. The residue was dissolved in 20 mL of EtOAc and washed with IN HCl (2 x 50 mL), water, brine and dried over Na2SO4. The solvent was removed under vacuum. The crude residue was then dissolved in DMF (40 mL) and Cs2CO3 (9.75 g, 30 mmol) and 2- (benzyloxycarbonylamino)ethyl methanesulfonate (6.8 g, 25 mmol) were added. After stirring at 100 0C under nitrogen for 2 h, a further amount OfCs2CO3 (9.75 g, 30 mmol) and 2-(benzyloxycarbonylamino)ethyl methanesulfonate (6.8 g, 25 mmol) were added. After stirring at 100 0C for 2 h, the reaction mixture was poured onto water (900 mL) and extracted with EtOAc (3 x 100 mL). The organic layers were combined, washed with water (50 mL) and dried over Na2SO4. The solvent was removed under vacuum and purified by flash chromatography using cyclohexane/EtOAc (8/2) as eluent to afford the title compound (2.45 g, 45percent yield) as a white solid. <n="54"/>ESMS; m/z 543, 545 (M+l), 560, 562 (M+18)1H-NMR (CDCl3): 63.54 (m, 4H), 4.06 (m, 4H), 5.09 (s, 4H), 5.62(bs, IH), 5.75(bs, IH), 6.82 (d, J= 8 Hz, IH), 6.91 (t, J= 8 Hz, IH), 7.13 (dd, J= 8 Hz, J= 1.3 Hz, IH), 7.32 (m, 10H). 13C-NMR (CDCl3): 540.5, 41.3, 66.8, 68.2, 71.8, 112.9, 118.0, 125.4, 128.1, 128.2, 128.5, 136.4, 152.6, 156.5.Theoretical Mass: (M + Na) 565.09501. Measured Mass: (M + Na) 565.09508 Microanalysis: percentC 57.58 (57.47), percentH 5.10 (5.01), percentN 5.16 (5.04) M.p. 54°C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
45% | With potassium fluoride; In DMF (N,N-dimethyl-formamide); at 135℃; for 3h; | To <strong>[14381-51-2]2,3-dihydroxy-bromobenzene</strong> (3.0 g, 0.16 mole), KF (4.63 g, 0.080 mole), DMF (15 ML was added CH2Br2 (4.13 g, 0.024 moles).. This suspension was heated to 135° C. for 3 hours, cooled and filtered.. The filtrate was poured into 200 ML of ether and washed with water, 1 N KOH and brine.. The organic layer was dried over magnesium sulfate, filtered and the solvent removed under vacuum, to yield 2,3-Methylenedioxy-bromobenzene (1.45 g, 45 percent yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With CuI; In acetone; | EXAMPLE 18 2-Methyl-4-(2,4-dibenzyloxyphenyl)-2-Buten-1-ol A mixture of 7.5 g (0.039 mol) of <strong>[14381-51-2]1-bromo-2,3-dihydroxybenzene</strong>, 11.2 g (0.082 mol) of K2 CO3, and 14 g (0.082 mol) of benzyl bromide in 70 ml of acetone was stirred at room temperature overnight, or until all starting material disappeared as indicated by TLC. The reaction mixture was poured into water and the aqueous solution was extracted with ether. The organic layer was separated, dried over MgSO4 and concentrated to give 14.5 g product as white solid. This compound, 1-bromo-2,4-dibenzyloxybenzene, as formed in accordance with the above procedure is conveniently summarized by the following reaction: STR9 A solution of 5.5 g (0.015 mol) of 1-bromo-2,4-dibenzyloxybenzene and 3.7 g (0.025 mol) of CH3 I in 20 ml of ether was added dropwise to 950 mg of Mg turning. The reaction mixture was refluxed for 2 hours and then cooled to -10° C. One gram of CuI was added, and stirring was continued at -10° C. for 30 min. A solution of 3.5 g (01042 mol) of 3-methyl-3,4-epoxy-1-butene in 10 ml of ether was then added dropwise to the reaction mixture, and stirring continued for another hour at -10° C. The reaction was quenced by satd. NH4 Cl solution. The organic layer was separated, dried over MgSO4 and concentrated. Purification of the crude product by dry column chromatography gave 1.6 g of product (a mixture of cis/trans isomer 8:2) as white solid; m.p. 83°-85° C. The product, 2-methyl-4-(2,4-dibenzyloxyphenyl)-2-buten-1-ol, formed from 1-homo-2,4-dibenzyloxybenzene, is conveniently depicted by the following reaction: STR10 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In dichloromethane; dimethyl sulfoxide; | EXAMPLE 2 1,3-Benzodioxole-4-sulfonamide To a solution of 18.8 g <strong>[14381-51-2]3-bromocatechol</strong> (prepared according to the procedure of H. S. Mason, J. Am. Chem. Soc., 1947, 69, 2241) and 10 g methylene chloride in 150 ml dimethyl sulfoxide at ambient temperature under nitrogen is added 8.3 g of sodium hydroxide (powdered). The reaction mixture is heated at 120° C. for 2 hours. Steam distillation gives 13.5 g of the solid, 4-bromo-1,3-benzodioxole. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; In N,N-dimethyl-formamide; at 100℃; for 4h; | The l-bromo-2,3-dimethoxybenzene (2.17 g, 10 mmol) was dissolved in DCM (60 ml) and treated with 1.0 M DCM solution OfBBr3 (15 mL, 15 mmol) at 0 °C and then allowed to warm to room temperature. After stirring overnight, the reaction mixture was cooled to 0 0C, 2 mL of MeOH was added, and the solvent was removed under vacuum. The residue was dissolved in 20 mL of EtOAc and washed with IN HCl (2 x 50 mL), water, brine and dried over Na2SO4. The solvent was removed under vacuum. The crude residue was then dissolved in DMF (40 mL) and Cs2CO3 (9.75 g, 30 mmol) and 2- (benzyloxycarbonylamino)ethyl methanesulfonate (6.8 g, 25 mmol) were added. After stirring at 100 0C under nitrogen for 2 h, a further amount OfCs2CO3 (9.75 g, 30 mmol) and 2-(benzyloxycarbonylamino)ethyl methanesulfonate (6.8 g, 25 mmol) were added. After stirring at 100 0C for 2 h, the reaction mixture was poured onto water (900 mL) and extracted with EtOAc (3 x 100 mL). The organic layers were combined, washed with water (50 mL) and dried over Na2SO4. The solvent was removed under vacuum and purified by flash chromatography using cyclohexane/EtOAc (8/2) as eluent to afford the title compound (2.45 g, 45percent yield) as a white solid. <n="54"/>ESMS; m/z 543, 545 (M+l), 560, 562 (M+18)1H-NMR (CDCl3): 63.54 (m, 4H), 4.06 (m, 4H), 5.09 (s, 4H), 5.62(bs, IH), 5.75(bs, IH), 6.82 (d, J= 8 Hz, IH), 6.91 (t, J= 8 Hz, IH), 7.13 (dd, J= 8 Hz, J= 1.3 Hz, IH), 7.32 (m, 10H). 13C-NMR (CDCl3): 540.5, 41.3, 66.8, 68.2, 71.8, 112.9, 118.0, 125.4, 128.1, 128.2, 128.5, 136.4, 152.6, 156.5.Theoretical Mass: (M + Na) 565.09501. Measured Mass: (M + Na) 565.09508 Microanalysis: percentC 57.58 (57.47), percentH 5.10 (5.01), percentN 5.16 (5.04) M.p. 54°C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In acetone;Reflux; | A mixture of <strong>[14381-51-2]3-bromocatechol</strong> (1.00 g, 5.29 mmol), 2-chloroacrylonitrile (0.600 mL, 5.29 mmol), and K2CO3 (0.731 g, 5.29 mmol) in anhydrous acetone (10 mL) was refluxed overnight and then concentrated. The residue was diluted with water and extracted with DCM (3x). The combined organic layer was washed with brine and concentrated. Chromatography (25percent EtOAc-hexanes) provided the two nitriles 1 B and 1C as a mixture in a 4:1 ratio (1.06g, 67percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With phosphorus trichloride; In benzene; at 20℃; | To a cold (0 C) solution of <strong>[14381-51-2]3-bromocatechol</strong> (6.00 g, 31.7 mmol) and acetone (2.80 mL, 38.1 mmol) in benzene (25 mL) was added dropwise PCl3 (1.11 mL, 12.7 mmol). The reaction mixture was stirred at rt until HCl evolution ceased, then H2O (100 mL) was added. Extraction with CH2Cl2 (3×30 mL), drying (Na2SO4), and purification of the residue on silica gel eluting with toluene afforded a colorless oil (6.24 g, 86%); Rf (toluene) 0.5; deltaH 1.72 (6H, s, 2Me), 6.67 (2H, 2d, J 4.7 Hz), 6.91 (1H, dd, J 4.7, 4.7 Hz); deltaC 25.9, 100.7, 107.5, 118.7, 122.1, 124.3, 145.7, 147.7; m/z (ESI) 229.0 (100, MH+); HRMS (ESI): MH+, found 228.987. C9H1079BrO2 requires 228.986. |
41.26% | With phosphorus trichloride; In toluene; at 0 - 80℃; for 48h; | To a cold (0 oq solution of <strong>[14381-51-2]3-bromobenzene-1,2-diol</strong> (2 g, 10.58 mmol),acetone (1 mL, 12.70 mmol) in toluene (11 mL) was added dropwise PCh (581 mg, 4.23mmol), then the mixture was stirred at 80 oc for 48h. T11e mixture was quenched with H20(20 mL) and extracted with DCM (10 mL x 2). The organic phase was dried over Na2S04, filtered and concentrated under vacuum. The product was purified by Flash ColumnChromatography (0-50 ~~) EAiPE). Compound 112A (1 g, yield 41.26'%) was obtained as awhite liquid. 1H NMR (DMSO-d6,400MHz): (5 6.98 (dd, J= 1.0, 8.3 Hz, lH), 6.85 (dd, J=1.0, 7.8 Hz, lH), 6.80- 6.71 (m, lH), 1.76- 1.60 (m, 7H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78.8% | With caesium carbonate; In N,N-dimethyl-formamide; at 100℃; for 2h; | In a 100 mL round-bottomed flask, 3-bromobenzene-l,2-diol (500 mg, 2.65 mmol, Eq: 1.00) was combined with DMF (10 ml) to give a colorless solution. Dibromomethane-D2 (698 mg, 3.97 mmol, Eq: 1.5) and CS2CO3 (2.15 g, 6.61 mmol, Eq: 2.5) were added. The reaction mixture was stirred for 2 hours at 100°C. The reaction mixture was poured into 25 mL H20 and extracted with EtOAc (3 x 50 mL). The organic layers were dried over Na2S04 and concentrated in vacuo. The crude material was purified by flash chromatography (silica gel, 20, 0percent to 30percent EtOAc in heptane) to obtain 4-bromo(2,2-D2)-l,3-benzodioxole as a colorless liquid (423 mg, 78.8percent), MS (GC-EI-MS) m/z = 202.0. |
78.8% | With caesium carbonate; In N,N-dimethyl-formamide; at 100℃; for 2h; | Step A: 4-bromo(2,2-D2)-1,3-benzodioxole[0235]In a 100 mL round-bottomed flask, <strong>[14381-51-2]3-bromobenzene-1,2-diol</strong> (500 mg, 2.65 mmol, Eq: 1.00) was combined with DMF (10 ml) to give a colorless solution. Dibromomethane-D2 (698 mg, 3.97 mmol, Eq: 1.5) and Cs2CO3 (2.15 g, 6.61 mmol, Eq: 2.5) were added. The reaction mixture was stirred for 2 hours at 100° C. The reaction mixture was poured into mL H2O and extracted with EtOAc (3×50 mL). The organic layers were dried over Na2SO4 and concentrated in vacuo. The crude material was purified by flash chromatography (silica gel, 20, 0percent to 30percent EtOAc in heptane) to obtain 4-bromo(2,2-D2)-1,3-benzodioxole as a colorless liquid (423 mg, 78.8percent), MS (GC-EI-MS) m/z=202.0. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60%; 8%; 3% | With sulfuric acid; In dichloromethane; at 35℃; for 72h; | In a glass pressure-bottle at ?20 to ?30 °C containing a mixture of <strong>[14381-51-2]3-bromocatechol</strong> (250 mg, 1.32 mmol), H2SO4 (trace), and CH2Cl2 (2 mL), isobutene (ca. 4 g) was condensed. After sealing the pressure-bottle with a threaded Teflon cap tipped with a Teflon-protected rubber O-ring, the mixture was heated at 35 °C. After 3 days, the tube was cooled (?20 °C) and Et3N (10 muL) was added. The residue containing unreacted starting material and O-tert-butylated products 5, 6, and 7 in 72:22:6 ratio (by 1H NMR), was purified by chromatography on silica gel eluting with hexane then hexane/EtOAc 97:3 affording in the following order 7 (12 mg, 3percent), 5 (195 mg, 60percent), and 6 (26 g, 8percent) as pure oils. 2-Bromo-6-tert-butoxyphenol (5): deltaH 1.42 (9H, s, t-Bu), 6.07 (1H, s, OH), 6.68 (1H, t, J 8.2 Hz), 6.97 (1H, dd, J 8.1 and 1.4 Hz), 7.19 (1H, dd, J 8.1 and 1.4 Hz); deltaC 28.9, 81.5, 108.4, 120.1, 121.0, 127.4, 143.0, 147.5. 3-Bromo-2- tert-butoxyphenol (6): deltaH 1.51 (9H, s, t-Bu), 5.54 (1H, s, OH), 6.81?6.93 (2H, m), 7.04?7.10 (1H,dd, J 7.3 and 2.3 Hz); 13C NMR: deltaC 29.6; 84.6; 114.7; 119.1; 124.7; 125.4; 141.4; 152.0. 1-Bromo-2,3-di-tert-butoxybenzene (7): deltaH 1.34 (9H, s, t-Bu), 1.45 (9H, s, t-Bu), 6.82 (1H, t, J 8.1 Hz), 6.97 (1H, dd, J 8.1 and 1.7 Hz), 7.27 (1H, dd, J 8.0 and 1.7 Hz); deltaC 28.8, 29.9, 81.0, 84.1, 121.4, 123.7, 124.6, 128.1, 149.1, 151.6; HRMS (ESI): MNa+, found 323.0634. C14H21O2Na79Br requires 323.0623. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
[00220] A mixture of compound 1-3 (3.0 g, 15.87 mmol), compound 91- 2 (2.6 g, 15.87 mmol), potassium carbonate (2.2 g, 15.87 mmol) and potassium iodide (266 mg, 1.6 mmol) in DMF (50 ml) was stirred at 60°C overnight. After concentration, the residue was dissolved in water (25 ml) and acidified with 6 N hydrochloric acid to pH = 2. The mixture was extracted with dichloromethane (20 ml chi 3), and the combined dichloromethane was washed with water and brine, dried over anhydrous Na2S04. The solvent was removed under vacuum and the crude product was purified by flash chromatography on silica gel (petroleum ether/ethyl acetate = 50:1) to give I .48 g of the mixture of compound 91-3 and 91-3B as colorless oil (yield 36percent). [00221] 1H NMR deltaEta (400 MHz; CDCI3): 1.80-1.84 (m, 3H), 2.49-2.54 (m, 2H), 4.10-4.22 (m, 2H), 4.82-5.00 (m, 2H), 6.03-6.07 (m, 1 H), 6.72-6.88 (m, 2H), 7.02-7.11 (m, 1 H). |