Structure of 1425038-21-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1425038-21-6 |
Formula : | C19H34N2O4 |
M.W : | 354.48 |
SMILES Code : | CC(N)(C)C.CC(C)(C)[C@H](NC(O[C@H]1[C@H](CCCC#C)C1)=O)C(O)=O |
MDL No. : | MFCD30489366 |
InChI Key : | YWWBXQRMMYKIGX-AUYLJXNTSA-N |
Pubchem ID : | 127255361 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 25 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.79 |
Num. rotatable bonds | 9 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 3.0 |
Molar Refractivity | 100.34 |
TPSA ? Topological Polar Surface Area: Calculated from |
101.65 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
4.29 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.22 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.23 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.15 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.06 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.59 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.21 |
Solubility | 2.17 mg/ml ; 0.00613 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.95 |
Solubility | 0.396 mg/ml ; 0.00112 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.92 |
Solubility | 4.29 mg/ml ; 0.0121 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.6 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<2.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
4.63 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine; In methanol; at 35℃;Inert atmosphere; | Example 10: Preparation of (S )-2-((( I R,2R)-2-(5 -(6-methoxy-3 -((3R,5 S)-5- (rnethoxvcarbonyflpylTolidin-3 -yloxy)guinoxalin-2-yl)pent-4-ynyl)cyclopropoxy)carbonylarnino)-3 ,3 -dirnethylbutanoic acid (16) :To a three-neck flask were added copper(I) iodide (0.219 g, 1 .152 mmol),chloroquinoxaline MsOH salt 14 (50 g, 115 mmol), alkyne acid TBA salt 15 (49.3 g, 121 mmol),and bis(triphenylphosphine)palladium(I1) dichioride (0.404 g, 0.573 mmol). The flask was vacuumed degassed with N2. MeOH (500 ml) was added and the reaction mixture was vacuum degassed again with N2. Triethylamine (32.1 ml, 230 mmol) was added. The reaction solution was aged at 35 C for 3-5 hours. The batch was then concentrated to a volume of100 mL invacuum. THF (250 mL) and EtOAc (250 mL) were added. The reaction mixture was cooled to below 5C. HC1 solution (1 N, 180 mL) was added slowly at below 5 C until the reaction solution was pH adjusted to 2. NaCl aq. solution (10%, 350 mL) was added. The separated aqueous phase was back-extracted with a solution of THE (250 mL) and EtOAc (250 mE). The combined organic phase was washed with 10% NaC1 aq. solution (500 mL). The organic phasewas azeotropically concentrated in vacuum with THF at below 20C until the KF of the solution was less than 500 ppm. Then, the reaction solvent was switched to DMAc (650 mL) in vacuum at below 20 C. | |
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine; In methanol; at 35℃;Inert atmosphere; | To a three-neck flask were added copper(I) iodide (0.219 g, 1.152 mmol), chloroquinoxaline MsOH salt 14 (50 g, 115 mmol), alkyne acid TBA salt 15 (49.3 g, 121 mmol), and bis(triphenylphosphine)palladium(II) dichloride (0.404 g, 0.573 mmol). The flask was vacuumed degassed with N2. MeOH (500 ml) was added and the reaction mixture was vacuum degassed again with N2. Triethylamine (32.1 ml, 230 mmol) was added. The reaction solution was aged at 35 C for 3-5 hours. The batch was then concentrated to a volume of-100 mL in vacuum. THF (250 mL) and EtOAc (250 mL) were added. The reaction mixture was cooled to below 5 C. HCl solution (1 N, -180 mL) was added slowly at below 5 C until the reaction solution was pH adjusted to -2. NaCl aq. solution (10%, 350 mL) was added. The separated aqueous phase was back-extracted with a solution of THF (250 mL) and EtOAc (250 mL). The combined organic phase was washed with 10% NaCl aq. solution (500 mL). The organic phase was azeotropically concentrated in vacuum with THF at below 20 C until the KF of the solution was less than 500 ppm. Then, the reaction solvent was switched to DMAc (650 mL) in vacuum at below 20 C. A solution of HATU (55.1 g, 145 mmol) in DMAc (650 mL) at ambient temperature was vacuumed degassed with N2. The solution was then cooled to 0 C and DIPEA (58.5 mL, 335 mmol) was added dropwise at below 0-5 C. Then, the above solution of alkyne quinoxaline acid 16 (65 g assay, 1 12 mmol) in DMAc was added dropwsie over 10 hours, while maintaining the internal temperature at 0 C. After addition, the batch was agitated at 0 C for additional 2 hours. EtOAc (750 mL) was added at below 5 C. A solution of 10% NaCl aq. solution (400 mL), water (125 mL) and 1 N HCl solution (100 mL) was slowly added while maintaining the batch temperature at below 5 C. The solution was then adjusted to pH = 2 with 1 N HCl (?25 mL). The separated aqueous phase was backextracted with EtOAc (500 mL). The combined organic phase was washed with 10% NaCl aq. solution (500 mL). After 10% NaCl aq. solution (500 mL) was added to the combined organic phase, the mixed solution was cooled to 0-5 C. I N NaOH aq. solution (-25 mL) was added to adjust the pH = ?7. The separated organic phase was filtered through Celite and solvent switched to IP A at a final volume of 300 mL. Acetic acid (5.0 mL) was added, and the batch was then heated up to reflux for 30 min. The slurry was cooled to 60 C and water (250 mL) was added dropwise over 1 hour. After addition, the batch was aged for additional 30 min before slowly cooling to ambient temperature in about 2 hours. After aging at least 1 hour, the batch was filtered. The wet cake was displacement washed with 50% aq IPA (100 mL). Suction dry at ambient temperature afforded 56 g of macrocyclic alkyne ester 17.'H NMR (400 MHz, CDCl3) delta 7.80 (d, J = 9.2 Hz, I H), 7.17 (dd, J = 9.2, 2.8 Hz, 1 H), 7.04 (d, J = 2.8 Hz, 1 H), 5.82 (t, J = 4.2 Hz, 1 H), 5.26 (d, J = 9.9 Hz, 1 H), 4.62 (dd, J = 10.3, 7.3 Hz, 1 H), 4.51 (d, J = 11.6 Hz, 1 H), 4.40 (d, J = 9.9 Hz, 1 H), 4.03 (dd, J = 11.6, 4.4 Hz, 1 H), 3.91 (s, 3 H), 3.87 (m, 1 H), 3.73 (s, 3 H), 2.85 (dt, J = 12.1, 4.2 Hz, 1 H), 2.76 (d, J = 14.4, 7.3 Hz, 1 H), 2.49 (dt, J = 12.2, 5.4 Hz, 1 H), 2.30 (ddd, J = 14.6, 10.1, 4.2 Hz, 1 H), 1.99 (m, 1 H), 1.82 (m, 1 H), 1.74 (m, 1 H), 1.08 (s, 9 H), 0.92 (m, 2 H), 0.76 (m, 1 H), 0.47 (m, 1 H). 13C NMR (100 MHz, CDCl3) delta 172.3, 171.3, 161.2, 157.4, 156.3, 140.4, 134.3, 130.2, 129.5, 119.5, 105.7, 98.9, 75.5, 75.2, 59.4, 58.1, 55.7, 55.6, 54.1, 52.3, 35.3, 35.0, 29.9, 28.0, 26.3,18.7, 18.3, 10.3. IPC HPLC conditions: Ascentis Express CI 8 column, 100 x 4.6 mm, 2.7micron; Column temperature of 40 C; Flow rate of 1.8 mL/min; and Wavelength of 215 nm. | |
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine; In methanol; at 35℃;Inert atmosphere; | To a 3-neck flask were added Cul (0.219 g, 1.152 mmol), chloroquinoxaline MsOH salt from Example 12 (50 g, 115 mmol), alkyne acid TBA salt from Example 10 (49.3 g, 121 mmol), and bis(triphenylphosphine)palladium(II) dichloride (0.404 g, 0.573 mmol). The flask was vacuumed degassed with N2. MeOH (500 ml) was added, and the reaction mixture was vacuum degassed again with N2. TEA (32.1 ml, 230 mmol) was added. The reaction solution was aged at 35C for 3 h to 5 h. The batch was then concentrated to a volume of -100 mL in vacuum. THF (250 mL) and EtOAc (250 mL) were added. The reaction mixture was cooled to below 5C. HC1 solution (1 N, -180 mL) was added slowly at below 5C until the reaction solution was pH adjusted to -2. NaCl aq. solution (10%, 350 mL) was added. The separated aqueous phase was back-extracted with a solution of THF (250 mL) and EtOAc (250 mL). The combined organic phase was washed with 10% NaCl aq. solution (500 mL). The organic phase was azeotropically concentrated in vacuum with THF at below 20C until the KF of the solution was less than 500 ppm. Then, the reaction solvent was switched to DMAc (650 mL) in vacuum at below 20C. A solution of HATU (55.1 g, 145 mmol) in DMAc (650 mL) at RT was vacuumed degassed with N2. The solution was then cooled to 0C, and DIPEA (58.5 mL, 335 mmol) was added dropwise at below 0C to 5C. Then, the above solution of alkyne quinoxaline acid (65 g assay, 112 mmol) in DMAc was added dropwise over 10 h, while maintaining the internal temperature at 0C. After addition, the batch was agitated at 0C for additional 2 h. EtOAc (750 mL) was added at below 5C. A solution of 10% NaCl aq. solution (400 mL), water (125 mL) and 1 N HC1 solution (100 mL) was slowly added while maintaining the batch temperature at below 5C. The solution was then adjusted to pH = 2 with 1 N HC1 (~25 mL). The separated aqueous phase was back-extracted with EtOAc (500 mL). The combined organic phase was washed with 10% NaCl aq. solution (500 mL). After 10% NaCl aq. solution (500 mL) was added to the combined organic phase, the mixed solution was cooled to 0C to 5C. 1 N NaOH aq. solution (~25 mL) was added to adjust the pH = ~7. The separated organic phase was filtered through CELITE (filter aid, Fisher Scientific, Fair Lawn, NJ) and solvent-switched to IPA at a final volume of 300 mL. AcOH (5.0 mL) was added, and the batch was then heated to reflux for 30 min. The slurry was cooled to 60C, and water (250 mL) was added dropwise over 1 h. After addition, the batch was aged for additional 30 min before slowly cooling to RT in about 2 h. After aging at least 1 h, the batch was filtered. The wet cake was displacement washed with 50% aq. IPA (100 mL). Suction-drying at RT afforded 56 g of macrocyclic alkyne ester. XH NMR (400 MHz, CDC13) delta 7.80 (d, J = 9.2 Hz, 1 H), 7.17 (dd, J = 9.2, 2.8 Hz, 1 H), 7.04 (d, J = 2.8 Hz, 1 H), 5.82 (t, J = 4.2 Hz, 1 H), 5.26 (d, J = 9.9 Hz, 1 H), 4.62 (dd, J = 10.3, 7.3 Hz, 1 H), 4.51 (d, J = 11.6 Hz, 1 H), 4.40 (d, J = 9.9 Hz, 1 H), 4.03 (dd, J = 11.6, 4.4 Hz, 1 H), 3.91 (s, 3 H), 3.87 (m, 1 H), 3.73 (s, 3 H), 2.85 (dt, J = 12.1, 4.2 Hz, 1 H), 2.76 (d, J = 14.4, 7.3 Hz, 1 H), 2.49 (dt, J = 12.2, 5.4 Hz, 1 H), 2.30 (ddd, J = 14.6, 10.1, 4.2 Hz, 1 H), 1.99 (m, 1 H), 1.82 (m, 1 H), 1.74 (m, 1 H), 1.08 (s, 9 H), 0.92 (m, 2 H), 0.76 (m, 1 H), 0.47 (m, 1 H). 1 C NMR (100 MHz, CDC13) delta 172.3, 171.3, 161.2, 157.4, 156.3, 140.4, 134.3, 130.2, 129.5, 119.5, 105.7, 98.9, 75.5, 75.2, 59.4, 58.1, 55.7, 55.6, 54.1, 52.3, 35.3, 35.0, 29.9, 28.0, 26.3, 18.7, 18.3, 10.3. IPC HPLC conditions: Ascentis Express C18 column, 100 x 4.6 mm, 2.7 mupiiota; Column temperature of 40C; Flow rate of 1.8 mL/min; and Wavelength of 215 nm. Gradiant: min 0.1% PO. 0 10 90 6 95 5 9 95 5 9.1 10 90 Retention times: min. De-BOC quinoxaline 2.3 Alkyne quinoxaline acid 3.3 Alkyne macrocyclic ester 5.7 |
With bis-triphenylphosphine-palladium(II) chloride; copper(l) iodide; triethylamine; In methanol; at 35℃;Inert atmosphere; | To a three-neck flask were added copper(I) iodide (0.219 g, 1.152 mmol), chloroquinoxaline MsOH salt 14 (50 g, 115 mmol), alkyne acid TBA salt 15 (49.3 g, 121 mmol), and bis(triphenylphosphine)palladium(II) dichloride (0.404 g, 0.573 mmol). The flask was vacuumed degassed with N2. MeOH (500 ml) was added and the reaction mixture was vacuum degassed again with N2. Triethylamine (32.1 ml, 230 mmol) was added. The reaction solution was aged at 35 C. for 3-5 hours. The batch was then concentrated to a volume of 100 mL in vacuum. THF (250 mL) and EtOAc (250 mL) were added. The reaction mixture was cooled to below 5 C. HCl solution (1 N, 180 mL) was added slowly at below 5 C. until the reaction solution was pH adjusted to 2. NaCl aq. solution (10%, 350 mL) was added. The separated aqueous phase was back-extracted with a solution of THF (250 mL) and EtOAc (250 mL). The combined organic phase was washed with 10% NaCl aq. solution (500 mL). The organic phase was azeotropically concentrated in vacuum with THF at below 20 C. until the KF of the solution was less than 500 ppm. Then, the reaction solvent was switched to DMAc (650 mL) in vacuum at below 20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tert-butyl methyl ether; at 40℃;Sealed tube; | A solution of alkyne alcohol (3.2 g assay, 25.85 mmol) in 2-MeTHF from Example 7 was added to a mixture of CDI (5.62 g, 33.61 mmol) in 2-MeTHF (32 mL) at 0C ± 5C over 2 h to 5 h. The reaction solution was agitated for additional 1 h to 2 h. Water (16 mL) was added dropwise, while maintaining the internal temperature at 0C to 5C. The reaction solution was then agitated at 0C to 5 C for additional 1 h to 2 h. Heptane (38 mL) was added. The organic phase was separated, and the aqueous layer was extracted with 2-MeTHF/heptane (1 : 1 , 10 mL). The combined organic phase was washed with water (16 mL). The organic phase was azeo tropically dried and solvent-switched to 2-MeTHF at a final volume of -10 mL. NMP (56 mL) was added, followed by tert-L-leucine (4.19 g, 31.02 mmol) and 2-hydroxypyridine N- oxide (1.17 g, 10.34 mmol). The reaction mixture was agitated between 60C to 65C for 10 h to 18 h. MTBE (48 mL) and water (48 mL) were added at RT. The batch was pH adjusted with 5N HC1 to pH = 2.0-2.5. The organic phase was separated, and the aqueous layer was extracted with MTBE (48 mL). The combined organic phase was washed with water (2 x 32 mL). The organic phase was extracted with NaOH aq. (1 N, 40 mL). The separated aqueous phase was washed with MTBE (2 x 32 mL). MTBE (50 mL) was added, and the batch was pH adjusted to pH = 2.0-2.5. The organic phase was washed with water (16 mL). The organic phase was azeo tropically dried under reduced pressure at a final volume of ~1 10 mL containing ~lwt% water. A solution of TBA (2.48 g, 33.61 mmol) in MTBE (3 mL) was added dropwise at 40C + 5C. After -35% of the above TBA solution was added, the batch was seeded. The remaining TBA solution was added dropwise over 2 h to 4 h. After aging at 40C + 5 C for additional 1 h to 2 h, the batch was cooled to RT and filtered. The wet cake was washed MTBE (3 x 30 mL) and dried in a vacuum oven at 30C to 35C with N2 sweep, which afforded the TBA salt. Typical yield: 76-81% |
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