Structure of 135159-25-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 135159-25-0 |
Formula : | C9H13BO5 |
M.W : | 212.01 |
SMILES Code : | COC1=CC(OC)=C(B(O)O)C(OC)=C1 |
MDL No. : | MFCD01114642 |
InChI Key : | PKLRXZVPEQJTTJ-UHFFFAOYSA-N |
Pubchem ID : | 4197996 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 15 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.33 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 55.74 |
TPSA ? Topological Polar Surface Area: Calculated from |
68.15 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.74 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.61 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.5 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.69 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.21 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.65 |
Solubility | 4.72 mg/ml ; 0.0223 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.75 |
Solubility | 3.77 mg/ml ; 0.0178 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.68 |
Solubility | 4.44 mg/ml ; 0.0209 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.07 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.34 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | The title compound was prepared using an adapted procedure for the same compound reported by Chaumeil et al.17 To a stirring solution of 1,3,5-trimethoxybenzene 7 (11.3 g, 67.2 mmol) in THF (200 mL) at 0 C, n-BuLi (45 mL, 1.60 M, 72.0 mmol) was added dropwise over 10 min. The resulting white suspension was stirred at this temperature for 2 h and then cooled to -78 C. B(OMe)3 (15.0 mL, 135 mmol) in THF (15 mL) was added dropwise over 1 h and the resulting mixture was stirred at -78 C for 1 h before being allowed to slowly warm in the cold bath to room temperature overnight. The resulting cloudy, white mixture was cooled to 0 C and water (100 mL) was added dropwise with stirring over 30 min. The mixture was poured into water (200 mL) and CH2Cl2 (300 mL) and stirred vigorously for 15 min. The phases were separated and the aqueous phase was extracted with CH2Cl2 (4×50 mL), and the combined organics were dried (Na2SO4), filtered and concentrated to provide a white powdery solid. The solid was dissolved in minimal boiling CHCl3 and a roughly equal portion of hot Et2O was added. The mixture was cooled to room temperature and placed in a -20 C freezer overnight to allow crystallization of the product. The resulting white crystals were isolated by suction, washed with cold Et2O (10 mL) and allowed to dry to provide 10.1 g (71%) of the desired boronic acid 9a. 1H NMR (400 MHz, CDCl3) delta 7.00 (s, 2H), 6.14 (s, 2H), 3.87 (s, 6H), 3.83 (s, 3H). NMR data for the synthesized compound corresponded to those reported for the title compound by Chaumeil et al.17 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With caesium carbonate;tetrakis(triphenylphosphine) palladium(0); In DMF (N,N-dimethyl-formamide); at 95℃; for 48h; | 2,4, 6-trimethoxyphenylboronic acid (2.12 g, 10.0 mmol) and diethyl 4-bromopyridine-2, 6-dicarboxylate (3.33 g, 11.0 mmol) were dissolved in dry DMF (50 mL). Caesium carbonate (4.56 g, 14.0 mmol) and tetra- kis (triphenylphosphine)-palladium (0) (0.23 g, 0.20 mmol) were added, and the mixture was deaerated with argon. The mixture was heated at 95 C for 48 h. The mixture was allowed to cool to room temperature and filtered. The filtrate was concentrated in vacuo, the residue was dissolved in chloroform (60 mL) and washed with 10% aq. citric acid and water, dried over Na2SO4 and con- centrated. Purification was performed on silica gel (eluent petroleum ether bp 40-60 C ; ethyl acetate 5: 3 ~ 2: 5, v/v). Yield was 2.09 g (54%).'H NMR (CDCI3) : 5 1.45 (6H, t, J 7.1) ; 3.74 (6H, s); 3.90 (3H, s); 4,49 (4H, q, J 7.1) ; 6.22 (2H, s); 8.28 (2H, s). IR (film)/ cm-1 1743,1610 (C=O) ; 1339,1238, 1128 (C-O), ESI-MS : [M+H] + 390. 19 calc. for C2oH24N07+ 390.15. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With caesium carbonate;tetrakis(triphenylphosphine) palladium(0); In DMF (N,N-dimethyl-formamide); at 95℃; | Tetra (tert-butyl) 2,2', 2", 2"'-[6-N-(4- methoxytrityl) hexylimino] bis (methylene) bis- (4-bromopyridine-6,2- diyl) bis (methylenenitrilo)} tetrakis (acetate) (4.0 g, 2.4 mmol) and trimethoxy- phenylboronic acid (1.1 g, 5.3 mmol) were dissolved in dry DMF (50 mL) and Cs2CO3 (2.0 g, 6.0 mmol) and Pd (PPh3) 4 (0. 1 g, 96 mumol) were added. After stirring overnight at 95, trimethoxyphenylboronic acid (0.5 g, 2.4 mmol), Cs2CO3 (0.79 g, 2mmol) and Pd (PPh3) 4 (50 mg, 43 mmol) were added. After overnight reaction the mixture was cooled to room temperature, filtered and evaporated. The mixture was dissolved in CH2CI2 and washed with water (2 40 ml). The product was purified by flash chromatography (silica gel, petroleum ether (40-60)/AcOEt/TEA 5: 2: 1, v/v/v). Yield was 3.1 g (90 %). IR (film) : 1737 (C=O), 1128 (C-O).'H NMR (CDC13) : No. 1. 15-1.25 (4H, m); 1.40-1. 45 (40 H, m); 2.04 (2H, t, J 6); 2.55 (2H, t, J 7); 3.50 (1 H, s); 3.51 (3H, s). ESI-MS : [M+H] + 1417. 5 calc. for C82H109N6015+ 1417. 8. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Ca. 20% | With bis-triphenylphosphine-palladium(II) chloride; water; sodium hydroxide; In tetrahydrofuran; at 70℃; for 24h;Inert atmosphere; | General procedure: A 25 mL round bottom flask was charged with 9a (ca. 320 mg, 1.51 mmol), either anhydrous NaOH or K2CO3 (ca. 3 mmol) and Pd(PPh3)2Cl2 (1 mol %). THF (10 mL) was then added and the mixture was stirred until the boronic acid and catalyst dissolved. The resulting mixture was degassed with an Argon sparge for 30 min. Neat BnBr (120 muL, 1 mmol) was added via syringe, followed by water (2 mL) for the aqueous reactions. The resulting mixtures were stirred for 24 h at 70 C, then cooled to room temperature and quenched by the addition of satd aq NH4Cl (10 mL). The resulting mixture was extracted with CH2Cl2 (2×20 mL) and the combined organics were dried (Na2SO4), filtered and concentrated in vacuo. The title product 10 was obtained in 10% isolated yield using aqueous K2CO3 as the base and 20% using aqueous NaOH as the base. In both cases the product was isolated as a white, powdery solid following silica gel chromatography (CH2Cl2/hexanes, 1:1) of the crude mixtures. 1H NMR (400 MHz, CDCl3) delta 7.24-7.07 (m, 5H), 6.15 (s, 2H), 3.93 (s, 2H), 3.80 (s, 3H), 3.77 (s, 6H). 13C NMR (100 MHz, CDCl3) delta 159.5, 159.1, 142.5, 128.6, 128.1, 125.4, 110.6, 90.9, 55.9, 55.5, 28.5. Mp 93-94 C (lit. Mp 93-95 C). NMR and mp data for the synthesized compound corresponded to those reported by Katritzky et al.24 for the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With trimethylsilyl trifluoromethanesulfonate; In tetrahydrofuran; at -78 - 20℃; for 4h;Inert atmosphere; | To a stirring solution of 6 (0.19 g, 0.21 mmol) and <strong>[135159-25-0]2,4,6-trimethoxyphenylboronic acid</strong> (12) (52 mg, 0.24 mmol) in THF (3 mL) at -78 C, neat TMSOTf (45.0 muL, 0.25 mmol) was added dropwise. Stirring was continued for 1 h at -78 C, and then the mixture was allowed to warm to room temperature in the cold bath over 3 h. The mixture was poured into satd aq NaHCO3 (10 mL)/EtOAc (20 mL) and stirred vigorously for 10 min. The phases were separated and the organic phase was sequentially washed with water (20 mL) and brine (20 mL), then dried (Na2SO4), filtered and concentrated. The residue was then purified by silica gel chromatography (EtOAc/hexanes 1:4) to provide title compound 13 (190 mg, 90%) as a white foamy solid after solvent removal. 1H NMR (600 MHz, CDCl3) 90:10 mixture of major and minor product. delta (major product only) 7.51-7.24 (m, 19H), 7.18-7.08 (m, 4H), 7.01 (d, 1H, J=8.3 Hz), 6.97 (m, 2H), 6.70 (d, 2H, J=7 Hz), 6.14 (s, 1H, C6-H), 6.04 (br s, 1H, TMB C-H), 5.98 (br s, 1H, TMB C-H), 5.25 (s, 2H, O-CH2-Ph), 5.17 (q, 2H, J=12 Hz, O-CH2-Ph), 5.06 (d, 1H, J=12 Hz, O-CH2-Ph), 5.04 (d, 1H, J=12 Hz, O-CH2-Ph) 4.85 (d, 1H, J=8.2 Hz, C4-H), 4.78 (d, 1H, J=11.5 Hz, O-CH2-Ph), 4.68 (d, 1H, J=9.72 Hz, C2-H), 4.55 (d, 1H, J=11.5 Hz, O-CH2-Ph), 3.95 (dd, 1H, J=9.7 and 8.2 Hz, C3-H), 3.82 (s, 3H, TMB-OMe), 3.72 (d, 1H, J=6 Hz, O-CH2-Ph), 3.59 (d, 1H, J=6 Hz, OCH2Ph), 3.47 (br s, 3H, TMB-OMe), 3.36 (br s, 3H, TMB-OMe). 13C NMR (125 MHz, CDCl3) delta (major product only) 159.3 (TMB-Cq-OMe), 159.2 (TMB-Cq-OMe), 158.3 (TMB-Cq-OMe), 156.0, 153.9, 153.7, 148.56, 148.51, 137.8, 137.33, 137.24, 136.8, 136.6, 132.4, 129-126 (Benzyl Ar-H), 120.6, 114.7, 114.2, 113.5, 111.3, 94.5 (C8), 92.7 (C6), 91.7 (TMB-C-H), 90.9 (TMB-C-H), 81.4 (O-CH2-Ph), 81.3 (C2), 73.9 (C3), 71.3 (O-CH2-Ph), 71.07 (O-CH2-Ph), 71.00 (O-CH2-Ph), 70.3 (O-CH2-Ph), 36.4 (C4). HRMS (ESI) calculated for C59H5379BrO9 [M+Na+], 1007.2765; found 1007.2767. FTIR (thin film): 3062, 3031, 2935, 2876, 2836, 1599, 1513, 1496, 1454, 1415, 1338, 1203, 1120, 1027, 811, 736, 698. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In tetrahydrofuran; at 70℃; for 15h;Inert atmosphere; | General procedure: To a suspension of Pd(PPh3)4 (0.271 g, 0.23 mmol), Aryl-B(OH)2 (11.7 mmol) and 12 (0.5 g, 1.17 mmol) in THF (50 ml) was added a saturated solution of K2CO3 (0.65 g, 4.7 mmol). Under the nitrogen atmosphere, the reaction mixture was heated to 70 C for 15 h. After cooling down, THF was removed under reduced pressure, and the residue was dissolved in CH2Cl2. Diluted HCl (10 ml) was added to neutralize the unreacted K2 CO3. The aqueous phase was extracted with CH2Cl2 (3×30 mL). The combined organic phases were subsequently washed with brine and dried. The solvent was removed under reduced pressure. The left residue was the crude product 2-aryl-3-O-methoxymethyl-17-deoxyestrone as yellow oil for next step unless more separations. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,2-dimethoxyethane; water; at 140℃; for 0.333333h;Microwave irradiation; | General procedure: The Suzuki coupling of 4 (300 mg, 1.09 mmol) or5 with the corresponding aryl boronic acid in the presence ofpalladium catalyst Pd(PPh3)4 (60 mg), basic conditions Na2CO3(250 mg), DME (10 mL), H2O (5 mL) and under microwave assistance(140 C, 20 min) led to 6c-6j and 7a. These compounds werepurified by column chromatography on silica gel, leading to thepure desired products4.1.11 N-Methyl-1-(2,4,6-trimethoxyphenyl)imidazo[1,2-a]quinoxalin-4-amine (6j) 2,4,6-Trimethoxyphenyl boronic acid (365 mg, 2.17 mmol). Yellow solid (20%). 1H NMR (400 MHz, CDCl3) delta: 7.70 (d, J = 8 Hz, 1H), 7.30-7.21 (m, 3H), 6.88 (td, 1H), 6.41 (br s, 1H), 6.18 (s, 2H), 3.86 (s, 3H), 3.56 (s, 6H), 3.22 (br s, 3H). 13C NMR (400 MHz, CDCl3) delta: 163.06, 160.18, 148.20, 132.16, 132.06, 126.41, 125.90, 122.62115.04, 114.45, 100.45, 90.78, 55.79, 55.53, 27.77. HRMS: m/z calcd for C20H21N4O3 [M]+ 365.1614; found 365.1613. |