Structure of 1209780-71-1
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CAS No. : | 1209780-71-1 |
Formula : | C10H17F2NO3 |
M.W : | 237.24 |
SMILES Code : | O=C(N1CC(F)(F)C(O)CC1)OC(C)(C)C |
MDL No. : | MFCD16250751 |
InChI Key : | GISYXRBCSOIMTM-UHFFFAOYSA-N |
Pubchem ID : | 56932106 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 16 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.9 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 57.89 |
TPSA ? Topological Polar Surface Area: Calculated from |
49.77 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.43 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.3 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.08 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.15 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.01 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.6 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.93 |
Solubility | 2.78 mg/ml ; 0.0117 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.95 |
Solubility | 2.69 mg/ml ; 0.0113 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.25 |
Solubility | 13.2 mg/ml ; 0.0558 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.82 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.88 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
tert-Butyl 3,3-difluoro-4,4-dihydroxypiperidine-l-carboxylate (3.10 g, 12.2 mmol) was dissolved in 95% EtOH (50 mL) and the solution was treated with sodium borohydride (2.32 g, 61.2 mmol) and stirred at ambient temperature for 3 hours. The reaction was treated dropwise with 3N HCl until vigorous gas evolution ceased, then stirred at ambient temperature for 20 minutes (pH of the mixture was 3-4 at this point). The reaction was neutralized with saturated NaHCCh and concentrated in vacuo. The residue was dissolved in ethyl acetate and water and the layers were separated. The aqueous layer was washed with ethyl acetate and the combined organic layers were washed with saturated NaCl, dried over Na2SO4 and concentrated in vacuo to provide the desired product as a white solid (1.39 g). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
tert-Butyl 3,3-difluoro-4- hydroxypiperidine-1-carboxylate (0.0706 g, 0.298 mmol) was treated with 1 M KOtBu in THF (0.283 mL, 0.283 mmol) and stirred for 15 minutes. The solution was treated with 2- ([l,2,4]triazolo[4,3-a]pyridin-3-yl)-6,8-difluoroquinoline (0.042 g, 0.149 mmol) and DMF (0.80 mL) then the mixture was stirred at ambient temperature for 16 hours. The mixture was directly chromatographed on SiO2 eluting with a gradient of 2% NH4OH in isopropanol/ethyl acetate. The desired product was collected and concentrated to a colorless oil, (72 mg). MS APCI (+) m/z 500.0 (M+l) detected. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82.1% | In dichloromethane; at 20℃; for 12h;Inert atmosphere; | To a solution of B7 (250 mg, 1.8 mmol) in dichloromethane (20 mL) was added di-tert-butyl dicarbonate (392 mg, 1.8 mmol). The reaction mixture was stirred at room temperature under nitrogen for 12 hours. Water was added to the solution and the mixture was extracted with dichloromethane (20 mL). The organic phase was dried over sodium sulfate, filtered, concentrated in vacuo and washed with n-hexane to give the product B8 as a white solid (350 mg, yield 82.1%). 1H NMR (400 MHz, DMSO-d6) 5ppm: 5.76 (d, J = 5.4 Hz, 1H), 4.02 - 3.66 (m, 2H), 3.68 - 3.44 (m, 2H), 3.29 (s, 1H), 1.75 (ddd, J = 11.3, 7.6, 3.8 Hz, 1H), 1.70 - 1.50 (m, 1H), 1.40 (s, 8H) |
In dichloromethane; at 20℃; for 2h;Inert atmosphere; | ferf-Butyl 3,3-difluoro-4-hydroxypiperidine-1 -carboxylate:In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to a solution of 3,3-difluoropiperidin-4-ol (700 mg, 5.10 mmol) in dry CH2CI2 (50 ml.) was added Boc20 (1 .1 1 g, 5.10 mmol). The reaction mixture was stirred at rt for 2 h. Water was then added, the layers separated and the aq. layer extracted with CH2CI2 (3x). The combined org. extracts were washed with brine, dried over MgS04, filtered, and concentrated under reduced pressure to give the title compound as a yellow solid. LC-MS-conditions 08: tR = 0.69 min; [M-CH3+H]+ = 223.30. | |
In dichloromethane; at 20℃; for 2h;Inert atmosphere; | tert-Butyl 3,3-difluoro-4-hydroxypiperidine-1-carboxylate In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to a solution of 3,3-difluoropiperidin-4-ol (700 mg, 5.10 mmol) in dry CH2Cl2 (50 mL) was added Boc2O (1.11 g, 5.10 mmol). The reaction mixture was stirred at rt for 2 h. Water was then added, the layers separated and the aq. layer extracted with CH2Cl2 (3*). The combined org. extracts were washed with brine, dried over MgSO4, filtered, and concentrated under reduced pressure to give the title compound as a yellow solid. LC-MS-conditions 08: tR=0.69 min; [M-CH3+H]+=223.30. |
In dichloromethane; at 20℃; for 2h;Inert atmosphere; | In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to a solution of 3,3-difluoropiperidin-4-ol (700 mg, 5.10 mmol) in dry CH2CI2 (50 ml_) was added Boc20 (1.1 1 g, 5.10 mmol). The reaction mixture was stirred at rt for 2 h. Water was then added, the layers separated and the aq. layer extracted with CH2CI2 (3x). The combined org. extracts were washed with brine, dried over MgS04, filtered, and concentrated under reduced pressure to give the title compound as a yellow solid. LC-MS-conditions 08: tR = 0.69 min; [M-CH3+H]+ = 223.30. | |
With triethylamine; In tetrahydrofuran; at 20℃; for 16h; | To a suspension of 3,3-difluoropiperidin-4-ol (1g; 5.76mmol) in THF (5ml_) was added triethylamine (0.86 mL; 6.34 mmol) followed by Boc anhydride (1.32g; 6.05mmol), and the mixture was stirred at RT for 16h. The reaction mixture was then diluted with water (100 mL) and extraxted with EtOAc (3x 50 mL), the organic layer was washed with 1N HCI (2 x 30 mL), brine, dried over anhydrous Na2S04, and concentrated to provide the desired product as a white solid . 1H NMR (400 MHz, DMSO-cfe) delta 5.73 (d, J= 5.4 Hz, 1H), 3.91 - 3.63 (m, 2H), 3.61 -3.41 (m, 2H), 3.29 (d, J=4.8Hz, 1H), 1.75 (ddt, J= 15.3, 7.7, 3.8 Hz, 1H), 1.56 (dtt, J= 11.0, 7.0, 3.1 Hz, 1 H), 1 .40 (s, 9H). M/Z (M+H) = 182.1 . |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With Dess-Martin periodane; In dichloromethane; at 20℃;Inert atmosphere; cooling with ice; | ferf-Butyl 4-(2-ethoxy-2-oxoethylidene)-3,3-difluoropiperidine-1 -carboxylate: In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to an ice-cold solution of ferf-butyl 3,3-difluoro-4-hydroxypiperidine-1- carboxylate (2.40 g, 10.00 mmol) in dry CH2CI2 (50 ml.) was added a solution of Dess- Martin periodinane (50 ml. of a 15% solution in CH2CI2, 24.00 mmol). The reaction mixture was stirred at rt until completion of the reaction. Sat. aq. NaHC03 (50 ml.) was then added followed by 10% aq. Na2S03 (50 ml_). The mixture was stirred at rt for 1 h, the layers separated and the aq. layer extracted with CH2CI2 (3x). The combined org. extracts were dried over MgS04, filtered, and concentrated under reduced pressure. The crude residue was redissolved in CH2CI2 (30 ml.) and stirred in the presence of molecular sieves for 24 h, filtered and concentrated under reduced pressure to give ferf-butyl 3,3-difluoro-4- oxopiperidine-1 -carboxylate as a yellow solid. In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to NaH (45 mg, 1 .12 mmol, 60% dispersion in oil washed with heptane) was added a solution of triethyl phosphonoacetate (262 mg, 1.17 mmol) in dry THF (10 ml.) at 0 C. The reaction mixture was stirred at 0 C for 30 min. Molecular sieves were then added followed by a solution of ferf-butyl 3,3-difluoro-4-oxopiperidine-1-carboxylate (220 mg, 0.93 mmol) in THF (5 ml_). The reaction mixture was stirred at 0 C for 30 min and at rt for 1 h. Water was then added and the mixture extracted with EA (3x). The combined org. extracts were dried over MgS04, filtered, and concentrated under reduced pressure to give the title compound as a yellow oil (mixture of E and Z isomers). LC-MS- conditions 08: tR = 0.88 and 0.93 min; [M-CH3+H]+ = 291.27. | |
With Dess-Martin periodane; In dichloromethane; at 20℃;Inert atmosphere; | tert-Butyl 4-(2-ethoxy-2-oxoethylidene)-3,3-difluoropiperidine-1-carboxylate In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to an ice-cold solution of <strong>[1209780-71-1]tert-butyl <strong>[1209780-71-1]3,3-difluoro-4-hydroxypiperidine-1-carboxylate</strong></strong> (2.40 g, 10.00 mmol) in dry CH2Cl2 (50 mL) was added a solution of Dess-Martin periodinane (50 mL of a 15% solution in CH2Cl2, 24.00 mmol). The reaction mixture was stirred at rt until completion of the reaction. Sat. aq. NaHCO3 (50 mL) was then added followed by 10% aq. Na2SO3 (50 mL). The mixture was stirred at rt for 1 h, the layers separated and the aq. layer extracted with CH2Cl2 (3*). The combined org. extracts were dried over MgSO4, filtered, and concentrated under reduced pressure. The crude residue was redissolved in CH2Cl2 (30 mL) and stirred in the presence of molecular sieves for 24 h, filtered and concentrated under reduced pressure to give tert-butyl 3,3-difluoro-4-oxopiperidine-1-carboxylate as a yellow solid. | |
With Dess-Martin periodane; In dichloromethane; at 20℃;Inert atmosphere; | In a flame dried round-bottomed flask equipped with a magnetic stir bar and under inert atmosphere (N2), to an ice-cold solution of terf-butyl 3,3-difluoro-4-hydroxypiperidine-1 - carboxylate (2.40 g, 10.00 mmol) in dry CH2CI2 (50 mL) was added a solution of Dess- Martin periodinane (50 mL of a 15% solution in CH2CI2, 24.00 mmol). The reaction mixture was stirred at rt until completion of the reaction. Sat. aq. NaHC03 (50 mL) was then added followed by 10% aq. Na2S03 (50 mL). The mixture was stirred at rt for 1 h, the layers separated and the aq. layer extracted with CH2CI2 (3x). The combined org. extracts were dried over MgS04, filtered, and concentrated under reduced pressure. The crude residue was redissolved in CH2CI2 (30 mL) and stirred in the presence of molecular sieves for 24 h, filtered, and concentrated under reduced pressure to give feri-butyl 3,3-difluoro-4- oxopiperidine-1 -carboxylate as a yellow solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A solution of a racemic mixture tert-butyl 3,3-difluoro-4-hydroxypiperidine-1- carboxylate (97 mgs, 0.41 mmol) in 2-Me-THF (9 mL) was stirred in an ice-water bath under an atmosphere of Argon. Potassium tert-butoxide solution (1.0 M, 0.4 mL, 0.41 mmol) was added in a single portion and the mixture was stirred at 0 C for 40 minutes, and then 2-fluoro-5-(6-(3-methoxy-4-(4-(oxetan-3-yl)piperazin-1 -yl)phenyl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)benzonitrile (100 mgs, 0.21 mmol) was added. The mixture was stirred at 60 C for 1 hr. After the mixture cooled to room temperature, water was added, and mixture evaporated under reduced pressure to yield the crude tert-butyl 4- (2-cyano-4-(6-(3-methoxy-4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)-7H-pyrrolo[2,3- d]pyrimidin-4-yl)phenoxy)-3,3-difluoropiperidine-1-carboxylate which was dissolved in DCM (3 mL) and TFA was added (2 mL). The resulting solution was stirred st rt for 16h. The mixture was then concentrated and purified by reverse phase chromatography to give the title compound as TFA salt. LCMS-ESI+ (m/z): [M+H]+ calcd for C32H33F2N7O3 as (M+H)+ 602.7 found: 602.2; 1H NM (400 MHz, DMSO-d6) delta 12.79 (s, 1 H), 10.15 (s, 1 H), 8.81 (s, 1 H), 8.68 - 8.48 (m, 2H), 7.75 - 7.60 (m, 3H), 7.47 - 7.45 (m, 1 H), 7.05 (d, J = 8.2 Hz, 1 H), 5.49 - 5.41 (m, 1 H), 4.91 - 4.85 (m, 2H), 4.52 - 4.43 (m, 1 H), 3.93 (s, 3H), 3.86 - 3.74 (m, 2H), 3.64 - 3.55 (m, 6H), 3.35 - 3.22 (m, 2H), 3.30 - 3.20 (m, 4H), 2.41 - 2.15 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
440 mg | A) tert-butyl 4-((3-chloropyrazin-2-yl)oxy)-3,3-difluoropiperidine-1-carboxylate To a mixture of <strong>[1209780-71-1]tert-butyl <strong>[1209780-71-1]3,3-difluoro-4-hydroxypiperidine-1-carboxylate</strong></strong> (400 mg) and DMF (6.0 mL) was added sodium hydride (88 mg) at 0 C., and the mixture was stirred for 15 min. To the mixture was added 2,3-dichloropyrazine (250 mg), and the mixture was stirred overnight at room temperature. The mixture was poured into saturated sodium hydrogencarbonate, and extracted with ethyl acetate. The organic layer was dried, and the solvent was evaporated under reduced pressure. The residue was purified by silica gel column chromatography (ethyl acetate/hexane) to give the title compound (440 mg). 1H NMR (300 MHz, CDCl3) delta 1.39-1.52 (9H, m), 1.90-2.29 (2H, m), 3.39 (1H, m), 3.56-3.91 (2H, m), 3.91-4.28 (1H, m), 5.60 (1H, m), 8.02 (2H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a mixture of NaH (8.35 g, 208.0 mmol, 60.0% purity, 1.1 eq) in DMF (225 mL) was added a solution of compound Z9 (45.0 g, 190.0 mmol, 1 eq) in DMF (90 mL) at 0 C and the mixture was stirred at 0 C for 0.5 h. A solution of compound 1A (37.9 g, 190.0 mmol, 1 eq) in DMF (45 mL) was added dropwise and the mixture was stirred at 25 C for 0.5 h. The reaction mixture was poured into aqueous saturated NH4C1 (500 mL), extracted with ethyl acetate (800 mL x 2). The organic phase was washed with water (300 mL x 2), brine (300 mL), dried over sodium sulfate, filtered and concentrated under vacuum to give a crude product. The crude product was purified by silica gel chromatography (Petroleum ether/Ethyl acetate=10/l, 1/2) to afford compound Z10 (79.0 g, 177.0 mmol, 93.3% yield, 93.5% purity) as an yellow oil. LCMS: RT = 0.994 min, MS[M+Na]+ = 439.0; NMR:, CDC13 400MHz. delta 7.69 (d, / = 3.6 Hz, 1H), 7.65 (dd, J = 3.6, 8.8 Hz, 1H), 6.99 (d, J = 8.8 Hz, 1H), 4.65 (dd, J = 3.2, 6.4 Hz, 1H), 4.38 - 4.13 (m, 1H), 4.05 - 3.84 (m, 1H), 3.76 - 3.51 (m, 1H), 3.48 - 3.22 (m, 1H), 2.14 - 2.05 (m, 2H), 1.48 (s, 9H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Step-1: <strong>[1209780-71-1]tert-butyl <strong>[1209780-71-1]3,3-difluoro-4-hydroxypiperidine-1-carboxylate</strong></strong> (154 mg, 0.46 mmol) was added Me-THF (9 mL) under argon atmosphere and cooled at 0 C. To well stirred solution was added potassium tert-butoxide (73 mg) at one portion and stirred for 30 minutes. To well stirred solution was added 2-fluoro-5-(4-((4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)amino)-1,3,5-triazin-2-yl)benzonitrile (200 mg, 0.46 mmol) and warmed to room temperature over 10 min. The reaction was heated at 80 C. overnight. The reaction was cooled to RT and diluted with DCM, quenched with water (5-8 mL) and the mixture was adsorbed on silica gel, the solvent concentrated to dryness. The crude product was purified by flash column chromatography on silica gel to afford tert-butyl 4-(2-cyano-4-(4-((4-(4-(oxetan-3-yl)piperazin-1-yl)phenyl)amino)-1,3,5-triazin-2-yl)phenoxy)-3,3-difluoropiperidine-1-carboxylate. LCMS-ESI+ (m/z): [M+H]+ calcd for C33H38F2N8O4: 649.3. found: 649.2 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium tert-butylate; In tetrahydrofuran; N,N-dimethyl-formamide; at 50℃; for 5h;Inert atmosphere; | To a solution of <strong>[1209780-71-1]tert-butyl <strong>[1209780-71-1]3,3-difluoro-4-hydroxypiperidine-1-carboxylate</strong></strong> (800 mg, 3.37 mmol) in THF (8 mL) was added potassium 2-methylpropan-2-olate (757 mg, 6.74 mmol). A solution of 1-fluoro-4-nitrobenzene (523 mg, 3.71 mmol) in DMF (1 mL) was added to the mixture, the reaction was stirred at 50 C. for 5 h under an atmosphere of N2(g). Upon completion the reaction was concentrated and the residue was purified by silica gel chromatography (10/1 petroleum ether/EtOAc) to give the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium tert-butylate; In tetrahydrofuran; N,N-dimethyl-formamide; at 50℃; for 1h; | To a solution of tert-butyl 3,3-difluoro-4-hydroxypiperidine-l -carboxylate (50 mg, 0.211 mmol) in THF (2 mL) was added potassium 2-methylpropan-2-olate (23.65 mg, 0.211 mmol). A solution of 3-fluorobenzonitrile (38.3 mg, 0.316 mmol) in DMF (0.5 mL) was added to the mixture and the resulting mixture was stirred at 50 C for 1 h. The reaction was quenched with water (2 mL) and extracted with EtOAc (30 mL x 3). The combined organic layers were washed with brine (50 m x 3), dried over sodium sulfate, filtered, and concentrated in vacuo. The residue was purified by silica gel chromatography (50: 1 to 1 : 1 petroleum ether: EtOAc) to give the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To as solution of tert-butyl 3,3-difluoro-4-hydroxypiperidine-1 -carboxylate (1 g; 4.22 mmol) in THF (10 mL) and cooled in an ice bath was added sodium hydride (0.34 g; 8.43 mmo) and the mixture was stirred for 1 h. Benzyl bromide (0.61 mL; 5.06 mmol) was added dropwise and the mixture was stirred at RT for 48h. The reaction mixture was diluted with water (200mL) and extracted with EtOAC (3x100 mL). The organic layer was washed with water (2x100mL), brine, dried over anhydrous Na2S04, and concentrated to provide the desired product as an amber thick oil. NMR (400 MHz, DMSO-cfe) delta 7.45 - 7.25 (m, 5H), 4.74 - 4.57 (m, 2H), 3.97 - 3.83 (m, 1 H), 3.83 - 3.69 (m, 1 H), 3.66 - 3.52 (m, 1 H), 3.54 - 3.42 (m, 1 H), 1 .93 - 1 .80 (m, 1 H), 1 .78 - 1 .61 (m, 1 H), 1 .40 (s, 9H). M/Z (M+H+Na) = 350.1. |
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