Structure of 1187932-25-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1187932-25-7 |
Formula : | C13H18BrNO2 |
M.W : | 300.19 |
SMILES Code : | O=C(OC(C)(C)C)N[C@@H](C1=CC=CC(Br)=C1)C |
MDL No. : | MFCD12913696 |
InChI Key : | WWNQMGYJYMXOEU-SECBINFHSA-N |
Pubchem ID : | 67959607 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 17 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.46 |
Num. rotatable bonds | 5 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 72.46 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.33 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.11 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.52 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.71 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.32 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.95 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.32 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.85 |
Solubility | 0.0424 mg/ml ; 0.000141 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-4.01 |
Solubility | 0.0294 mg/ml ; 0.000098 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.62 |
Solubility | 0.00712 mg/ml ; 0.0000237 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
Yes |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.63 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.53 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | bis-triphenylphosphine-palladium(II) chloride; In toluene; at 60℃; for 16h;Inert atmosphere; | Compound 16b: [(R)-1-(3-Vinyl-phenyl)-ethyl]-carbamic acid iert-butyl ester; A solution of [(R)-1 -(3-bromo-phenyl)-ethyl]-carbamic acid te/t-butyl ester (10.26 g, 0.0342 mol.) and tributyl(vinyl)stannane (32.5 g, 30ml_, 0.103 mol.) in toluene (175 mL) was purged with nitrogen for 30 minutes before addition of bis(triphenylphosphine palladium II chloride (2.38 g, 0.0034 mol.). The stirred mixture was heated to 60 C for 16 hours before cooling to room temperature. The reaction mixture was filtered through hyflo-supercel then evaporated to give a dark coloured oil. The oil was purified by silica gel chromatography using /so-hexanes/ethyl acetate 19:1 to yield the title compound (6.95 g, 82%) as a yellow oil. H NMR (300 MHz, CDCI3) deltalambda .39-1 .51 (m, 12H), 4.80 {br s, 2H), 5.24-5.32 (m, 1 H), 5.77 (d, J = 17.6 Hz, 1 H), 6.73 (dd, J = 17.6, 10.9 Hz, 1 H), 7.18-7.36 (m, 4H). |
82% | Compound 1 i Synthesis of Compound 1i: A solution of 1 h (10.26 g, 0.0342 mol.) and tributyl(vinyl)stannane (32.5 g, 30ml_, 0.103 mol.) in toluene (175 mL) was purged with nitrogen for 30 minutes before addition of bis(triphenylphosphine palladium(ll) dichloride (2.38 g, 0.0034 mol). The stirred mixture was heated to 60 C for 16 h before cooling to room temperature. The reaction mixture was filtered through hyflo-supercel then evaporated to give a dark colored oil. The oil was purified by silica gel chromatography using /'so-hexane/ethyl acetate 19:1 to yield the title compound (6.95 g, 82%) as a yellow oil. | |
82% | With bis-triphenylphosphine-palladium(II) chloride; In toluene; at 60℃; for 16h;Inert atmosphere; | A solution of 1 g (10.26 g, 0.0342 mol.) and tributyl(vinyl)tin (32.5 g, 30 mL, 0.103 mol.) in toluene (175 mL) was purged with nitrogen for 30 min before addition of bis(triphenylphosphine) palladium (II) dichloride (2.38 g, 0.0034 mol.). The stirred mixture was heated to 60C for 16 h before cooling to RT. The reaction mixture was filtered through hyflo-supercel then evaporated to give a dark coloured oil. The oil was purified by silica gel chromatography using iso- hexanes/ethyl acetate 19:1 to yield the title compound (6.95 g, 82%) as a yellow oil |
82% | With bis-triphenylphosphine-palladium(II) chloride; In toluene; at 60℃; for 16.5h;Inert atmosphere; | A solution of 1g (10.26 g, 0.0342 mol.) and tributyl(vinyl)tin (32.5 g, 30 mL, 0.103 mol.) in toluene (175 mL) was purged with nitrogen for 30 min before addition of bis(triphenylphosphine) palladium (II) dichloride (2.38 g, 0.0034 mol.). The stirred mixture was heated to 60 C. for 16 h before cooling to RT. The reaction mixture was filtered through hyflo-supercel then evaporated to give a dark coloured oil. The oil was purified by silica gel chromatography using iso-hexanes/ethyl acetate 19:1 to yield the title compound (6.95 g, 82%) as a yellow oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With triethylamine; In dichloromethane; at 20℃; | Example 16, Compound 16; (E)-(2R,5S,11 S,14S,17R,18R)-11 -(3-Hydroxy-benzyl)-14-isopropyl-18-methoxy- 2,17-dimethyl-3,9,12,15,28-pentaaza-tricyclo[21.3.1.1 *5,9*]octacosa- 1 (27),21 ,23,25-tetraene-4,10,13,16-tetraone.; Com ound 16a: [(R)-1 -(3-Bromo-phenyl)-ethyl]-carbamic acid iert-butyl esterA solution of (R)-bromo-a-methylbenzylamine (1 .023 g, 5.1 12 mmol) indichloromethane (20 mL) was subsequently treated with triethylamine (720 muIota_, 5.1 12 mmol) and di-te/t-butyl dicarbonate (1 .784 g, 8.179 mmol). After overnight stirring at room temperature, the volatiles were removed in vacuo and the residue was purified by silica gel chromatography using a 50 g Isolute cartridge eluted with a continuous gradient of /so-hexanes/Et20 1 :0 to 4:1 to afford the title compound (1 .552 g, 100%) as a white solid. H NMR (300 MHz, CDCI3) 1 .43 (br s, 12H), 4.77 (br s, 2H), 7.16-7.26 (m, 2H), 7.39 (dt, J = 2.0, 7.1 Hz, 1 H), 7.46 (s, 1 H). |
100% | With triethylamine; In tetrahydrofuran; at 20℃; for 3h; | 00198] To a solution of (R)-l-(3-bromophenyl)ethanamine (100 mg, 0.500 mmol) in tetrahydrofuran (4 mL) was added Et3N (0.104 mL, 0.750 mmol), followed by di- tert-butyl dicarbonate (131 mg, 0.600 mmol). The reaction mixture was stirred at rt for 3 h. The solvent was removed under reduced pressure. The crude residue was diluted with Et20 and washed with IN HC1, H20 then dried over Na2S04. The Et20 layer was concentrated in vacuum to give the crude Intermediate 33A (150 mg, 0.500 mmol, 100 % yield). LC-MS (ESI) m/z 245.9 (M-Boc+H), RT = 2.13 min (Method |
100% | With triethylamine; In tetrahydrofuran; at 20℃; for 3h; | To a solution of (R)-l-(3-bromophenyl)ethanamine (0.10 g, 0.50 mmol) in tetrahydrofuran (4 mL) was added Et3 (0.10 mL, 0.75 mmol), followed by di-tert-butyl dicarbonate (0.13 g, 0.60 mmol). The reaction mixture was stirred at rt for 3 h. The solvent was removed under reduced pressure. The crude residue was diluted with Et20 and washed with 1 N HC1, H20 then dried over a2S04. The Et20 layer was concentrated in vacuum to give the crude Intermediate 10A (150 mg, 0.500 mmol, 100% yield). LC-MS (ESI) m/z 245.9 (M-Boc+H), RT = 2.13 min (Method B). |
100% | With triethylamine; In dichloromethane; at 20℃; | Compound 1 h Synthesis of Compound 1h: A solution of (R)-bromo-a-methylbenzylamine (1.023 g, 5.1 12 mmol) in dichloromethane (20 ml.) was subsequently treated with triethylamine (720 muIota_, 5.1 12 mmol) and di-ferf-butyl dicarbonate (1 .784 g, 8.179 mmol). After overnight stirring at room temperature, the volatiles were removed in vacuo and the residue was purified by silica gel chromatography using a 50 g Isolute cartridge eluted with a continuous gradient of iso- hexane/diethyl ether 1 :0 to 4:1 to afford the title compound (1 .552 g, 100%) as a white solid |
100% | With triethylamine; In dichloromethane; at 20℃; | A solution of (R)-bromo-a-methylbenzylamine (1 .023 g, 5.1 12 mmol) in dichloromethane (20 mL) was subsequently treated with triethylamine (720 mu, 5.1 12 mmol) and di-ferf-butyl dicarbonate (1.784 g, 8.179 mmol). After overnight stirring at RT, the volatiles were removed in vacuo and the residue was purified by silica gel chromatography using a 50 g Isolute cartridge eluted with a continuous gradient of /'so-hexanes/diethyl ether 1 :0 to 4:1 to afford the title compound (1 .552 g, 100%) as a white solid |
100% | With triethylamine; In dichloromethane; at 20℃; | A solution of (R)-bromo-alpha-methylbenzylamine (1.023 g, 5.112 mmol) in dichloromethane (20 mL) was subsequently treated with triethylamine (720 muL, 5.112 mmol) and di-tert-butyl dicarbonate (1.784 g, 8.179 mmol). After overnight stirring at RT, the volatiles were removed in vacuo and the residue was purified by silica gel chromatography using a 50 g Isolute cartridge eluted with a continuous gradient of iso-hexanes/ diethyl ether 1:0 to 4:1 to afford the title compound (1.552 g, 100%) as a white solid. |
84% | In dichloromethane; at 20℃; for 1h; | Compound 6a Synthesis of Compound 6a: A solution of (R)-bromo-a-methylbenzylamine (2.0 g, 10 mmol) in dichloromethane (20 mL) was treated with a solution of di-ferf-butyl dicarbonate (2.4 g, 1 1 mmol) in dichloromethane (20 mL) and the reaction mixture was stirred at room temperature for 1 h. The solution was washed with 2 M hydrochloric acid, water and brine, dried over sodium sulfate, filtered and evaporated. The residue was purified by silica gel chromatography using a gradient of /'so-hexane/ethyl acetate 20:1 to 6:1 to afford the title compound (2.51 g, 84%) as a white solid. |
With N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃;Inert atmosphere; | Boc-anhydride (3.71 ml, 16.0 mmol) was added to a solution of (R)-1-(3- bromophenyl)ethanamine (CAS 176707-77-0) (2.0 g, 10.0 mmol) and DIEA (1.83 ml, 10.5 mmol) in DCM (40.0 ml) at room temperature. After stirring overnight the reaction was purified directly by flash chromatography (100% DCM) to provide the title compound. 1H NMR (400 MHz, DMSO-c/6) delta ppm 7.49 (s, 1 H) 7.35 - 7.46 (m, 2 H) 7.20 - 7.35 (m, 2 H) 4.49 - 4.68 (m, 1 H) 1.18 - 1.49 (m, 12 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With tris-(dibenzylideneacetone)dipalladium(0); 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In toluene; at 70℃; for 16h; | [00199] To a suspension of Intermediate 33 A (50 mg, 0.167 mmol) and Pd2(dba)3 (15.25 mg, 0.017 mmol) in toluene (2 mL) was added xantphos (28.9 mg, 0.050 mmol), benzyl piperazine-l-carboxylate (36.7 mg, 0.167 mmol), followed by sodium tert-butoxide (48.0 mg, 0.500 mmol). The reaction mixture was stirred at 70 C for 16 h, and then filtered. The filtrate was concentrated and purified on ISCO using a 15 min gradient from 0 to 100% EtOAc in hexane to give Intermediate 33B (70 mg,0.159 mmol, 96 % yield). LC-MS (ESI) m/z 440.1 (M+H), RT = 2.27 min (Method B). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With tris-(dibenzylideneacetone)dipalladium(0); 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; sodium t-butanolate; In toluene; at 70℃; for 16h; | To a suspension of Intermediate 10A (50 mg, 0.17 mmol) and Pd2(dba)3 (15 mg, 0.017 mmol) in toluene (2 mL) was added Xantphos (29 mg, 0.050 mmol), benzyl piperazine-l-carboxylate (37 mg, 0.17 mmol), followed by sodium tert-butoxide (48 mg, 0.50 mmol). The reaction mixture was stirred at 70 C for 16 h, and then filtered. The filtrate was concentrated and purified by flash chromatography using a 15 min gradient from 0 to 100% EtOAc in hexanes to give Intermediate 10B (70 mg, 0.16 mmol, 96% yield). LC-MS (ESI) m/z 440.1 (M+H), RT = 2.27 min (Method B). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74.5% | To a degassed solution of Intermediate 1 1A (3.00 g, 9.99 mmol), tert-butyl 4- (4,4,5, 5-tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-pyrazole-l-carboxylate (4.410 g, 14.99 mmol) and potassium carbonate (4.14 g, 30.0 mmol) in dioxane (20 mL)/water (8 mL) was added Tetrakis (0.577 g, 0.500 mmol). The vial was purged with argon, sealed and stirred at 90 C for 16 h. Another 20% of tetrakis and boronic ester were added and the reaction mixture was degassed and heated at 90 C for 24 h. The reaction was cooled down to rt and NaOH (14.99 mL, 14.99 mmol) was added and the reaction was stirred at 50 C for 5 h. The mixture was partitioned between EtOAc and water. The organic layer was separated. The aqueous phase was extracted with EtOAc, and the combined organic layers were dried over MgS04 and concentrated in vacuo. The crude material was purified by flash chromatography over 120 g of silica gel (15 min gradient, with 0-100% ethyl acetate in hexanes) to afford Intermediate 1 IB (2.14 g, 7.45 mmol, 74.5% yield) as a white solid. LCMS = 1.86 min [M+l] = 288.2 (Method B). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | Synthesis of Compound 6b: A mixture of 6a (900 mg, 3 mmol), 4-(2- methoxycarbonylethyl) phenylboronic acid (624 mg, 3 mmol) in 1,2-dimethoxyethane (10 mL) and potassium carbonate (828 mg, 6 mmol) in water (2 mL), was stirred at room temperature. Tetrakis(triphenylphosphine)palladium(0) (172 mg, 0.15 mmol) was added and the reaction mixture was heated at 100C in a microwave reactor for 1 hour. The organic layer wasseparated. The organic layer was filtered through a hydrophobic frit and the filtrate was evaporated. The residue was purified by silica gel chromatography using a gradient of isohexanes/ethyl acetate 20:1 to 5:1 to afford the title compound (958 mg, 83%) as a white solid. |
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