Structure of 1187449-01-9
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CAS No. : | 1187449-01-9 |
Formula : | C5H4BrClN2 |
M.W : | 207.46 |
SMILES Code : | NC1=NC=C(Cl)C(Br)=C1 |
MDL No. : | MFCD15143360 |
InChI Key : | VIZMARKIEQIMIG-UHFFFAOYSA-N |
Pubchem ID : | 53485418 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 41.35 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.91 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.57 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.82 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.09 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.6 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.03 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.82 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.77 |
Solubility | 0.355 mg/ml ; 0.00171 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.26 |
Solubility | 1.15 mg/ml ; 0.00553 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.14 |
Solubility | 0.15 mg/ml ; 0.000724 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.27 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.82 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at -20 - 20℃; for 24h; | 4-Bromopyridin-2-amine (17.3 g, 100 mmol) was dissolved in DMF (200 mL) and cooled at -20C. NCS (14.7 g, 110 mmol) was added in portions at -20C. The reaction mixture was stirred at rt. for 24 h, and then diluted with WATER (200 mL), extracted with EtOAc (100 mL*3). The combined organic layers were washed with saturated brine (100 mL*2), dried over anhydrous Na2SO4, and filtered. The filtrate was concentrated. The residues were purified by column chromatography (eluent: PE:EtOAc, 5:1 to 1:1) to give 15 g of the title compound as a yellow solid (yield: 72%). |
61% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at -20 - 20℃; for 24h; | [00252j 27A. 4-Bromo-5-chloropyridin-2-amine: To a stirred solution of 4-bromopyridin-2-amine (30.0 g, 173 mmol) in DMF (350 mL) at -20 C was added 1-chloropyrrolidine-2,5-dione (24.3 g, 182 mmol). The reaction mixture was stirred at rtfor 24 h. The reaction mixture was poured into cold 1 M aq. NaOH (300 mL) andextracted with Et20 (2 x 400 mL). The combined extracts were washed with water (3 x200 mL), brine (200 mL), dried over Na2SO4, filtered, and concentrated. The crudematerial was recrystallized from CH2C12 to provide 27A as red solid (22.0 g, 106 mmol,61% yield). LC-MS Anal. Calc?d for C5H4BrC1N2: 205.93, found [M+H] 206.9. |
61% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at 20℃; for 24h; | 81A. 4-Bromo-5-chloropyridin-2-amine To a stirred solution of 4-bromopyridin-2-amine (30 g, 173 mmol) in DMF (350 mL) at -20 C. was added 1-chloropyrrolidine-2,5-dione (24 g, 182 mmol). The reaction mixture was allowed to stir at rt for 24 h. The reaction mixture was poured into a cold solution of 1M NaOH (300 mL) and the mixture was extracted with Et2O (2*400 mL). The combined extracts were washed with water (3*200 mL), brine (200 mL), dried over Na2SO4, filtered and concentrated. The crude material was recrystallized from DCM which afforded 4-bromo-5-chloropyridin-2-amine as red solid (22 g, 106 mmol, 61% yield). LC-MS Anal. Calc'd for C5H4BrClN2 205.93. found [M+H] 206.9. 1H NMR (400 MHz, CDCl3) delta 8.08 (s, 1H), 6.81 (s, 1H), 4.49 (br. s., 2H). |
61% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at -20 - 20℃;Inert atmosphere; | Description 14 (D14); 4-bromo-5-chloro-2-pyridinamine; To a stirred solution of 2-amino-4-bromopyridine (15.0 g, 86.7 mmol) in N, N- dimethylformamide (430 ml_) at -200C was added N-chlorosuccinimide (12.99 g, 95.34 mmol). Reaction mixture allowed to stir at room temperature for 24 h. Reaction mixture poured into cold 1 M sodium hydroxide (750 ml_) and extracted with diethyl ether (4 x 500 ml_). The combined extracts were washed with water (3 x 200 ml_), brine (200 ml_), dried over sodium sulfate, filtered and solvent removed in vacuo yielding a solid (17.2 g) which was recrystallised from hexane to yield a solid (12.8 g). Material purified by column <n="70"/>chromatography eluting with 0-25% ethyl acetate in dichloromethane. The relevant fractions were combined and solvent removed in vacuo to furnish the title compound (1 1.0 g, 61 %). 1H NMR: (300 MHz, CDCI3) delta 8.05 (s, 1 H), 6.79 (s, 1 H), 4.49 (s, 2H). |
43.7% | With N-chloro-succinimide; In N,N-dimethyl-formamide; at -78 - 20℃;Inert atmosphere; | N-Chloro-succinimide (3.70 g, 27.7 mmol) dissolved in DMF (20 mL) was added dropwise to 4-bromopyridin-2-amine (4.40 g, 25.4 mmol) in DMF (50 mL) at -78 C. over a period of 30 minutes under nitrogen. The resulting suspension was then allowed to warm to r.t. After stirring under these conditions for 24 h, the reaction mixture was diluted with Et2O (50 mL) and washed sequentially with 1 M aqueous NaOH (2×50 mL), water (50 mL), and saturated aqueous sodium chloride (25 mL). The organic layer was dried over MgSO4, filtered and concentrated under reduced pressure. The resulting crude product was purified by flash silica chromatography, elution gradient 0 to 25% EtOAc in DCM. Pure fractions were evaporated to dryness to afford 4-bromo-5-chloropyridin-2-amine (2.30 g, 43.7%) as a cream solid. 1H NMR (400 MHz, DMSO-d6, 30 C.) 6.35 (2H, s), 6.82 (1H, s), 8.01 (1H, s). m/z: ES+[M+H]+ 209 (35C1 81Br and 37C1 79Br isotopes). |
With N-chloro-succinimide; In N,N-dimethyl-formamide; at 20℃; for 12h; | To a solution of 4-bromopyridin-2-amine (500 mg, 2.89 mmol) in N,N-dimethylformamide (5 mL) was added N-chlorosuccinimide (463 mg, 3.47 mmol) and the mixture was stirred at room temperature for 12 hours. The mixture was filtered through diatomaceous earth and concentrated and the residue was dissolved in ethyl acetate. The solution was washed with water and brine, dried over anhydrous sodium sulfate, filtered, and concentrated to afford the crude title compound. Purification by column chromatography (silica gel, 30 % ethyl acetate in hexane) afforded the title compound. | |
With N-chloro-succinimide; In N,N-dimethyl-formamide; at -20 - 20℃; for 16h; | To a solution of 4-bromopyridin-2-amine (12.0 g, 69.4 mmol) in N,N-dimethylformamide (200 mL) at -20 C. was slowly added a solution of 1-chloropyrrolidine-2,5-dione (10.24 g, 77.0 mmol) in N,N-dimethylformamide (200 mL). The mixture was stirred at room temperature for 16 hours and the mixture was poured into cold 1M aqueous sodium hydroxide (1000 mL) and extracted with ethyl acetate. The organic layer was washed with water and brine, dried over sodium sulfate, filtered and concentrated. Purification by column chromatography on silica (Analogix 280), eluting with a gradient of 5-65% ethyl acetate/hexanes gave the title compound. MS (ESI) m/e 208 (M+H)+. | |
With N-chloro-succinimide; In N,N-dimethyl-formamide; at -20 - 20℃; for 24h; | General procedure: 5.2.2.30 7,8-Dichloro-1,4-dihydropyrido[2,3-b]pyrazine-2,3-dione (30) To a solution of 2-amino-4-chloropyridine (1.28 g, 10.0 mmol) in DMF (40 mL) at -20 C was added NCS (2.67 g, 20.0 mmol). This mixture was allowed to warm to room temperature and stirred for 24 h, and then poured into 300 mL ice-water and extracted with ethyl acetate. The extracts were washed with 1 M NaOH and brine, dried and evaporated. The residue was purified by column chromatography on silica gel to give 4,5-dichloropyridin-2-amine (1.12 g, 69.0%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With Iodine monochloride; In N,N-dimethyl-formamide; at 40℃; for 31h;Inert atmosphere; | Description 15 (D15); 4-bromo-5-chloro-3-iodo-2-pyridinamine; To a stirred solution of <strong>[1187449-01-9]4-bromo-5-chloro-2-pyridinamine</strong> D14) (1 1.0 g, 48.2 mmol) in N, N- dimethylformamide (430 ml_) at 400C was added iodine monochloride (9.40 g, 57.9 mmol) and allowed to stir at this temperature for 3 h. A further portion of iodine monochloride(9.40 g, 57.9 mmol) was added and allowed to stir at the same temperature for 24 h.Additional iodine monochloride (4.70 g, 28.9 mmol) added and reaction mixture allowed to stir for 4 h at 400C. Reaction mixture poured into water (1500 mL), upon addition a precipitate formed. Solid isolated, washed with water (500.00 cm3), dissolved in dichloromethane (1600 mL) and washed with 10% sodium thiosulfate solution (2 x 250 mL). Organic portion dried over sodium sulfate, filtered and solvent removed in vacuo yielding a solid (16.2 g). Material purified by column chromatography eluting with 75-100% dichloromethane in hexane followed by 1% ethyl acetate in dichloromethane. The relevant fractions were combined and solvent removed in vacuo yielding the title compound (13.8 g, 78%).1H NMR: (300 MHz, CDCI3) delta 8.00 (s, 1 H), 5.16 (s, 2H). |
50% | With Iodine monochloride; In N,N-dimethyl-formamide; at 40℃; | 4-Bromo-5-chloropyridin-2-amine (15 g, 72 mmol) was dissolved in DMF (200 mL) and heated to 40C. Then ICl (12.2 g, 75 mmol) was added and stirred for 4 hours at 40C. ICl (13 g, 80 mmol) was supplemented and then stirred for another 4 hours, and then a third ICl (13 g, 80 mmol) was added and stirred overnight at 40C. After completion of the reaction, the reaction mixture was cooled to rt., diluted with water (200 mL), and extracted with DCM (200 mL*3). The combined organic layers were washed with an aqueous solution of sodium thiosulfate (100 mL*3) and saturated brine (100 mL*2), dried over anhydrous Na2SO4, and then filtered. The filtrate was concentrated. The residues were purified by column chromatography (eluent: PE : EtOAc, 5:1 to 1:1) to give 12g of the title compound as claybank solid (yield: 50%). |
With Iodine monochloride; In N,N-dimethyl-formamide; at 40℃; | A solution of Example 52A (3 g, 14.46 mmol) in N,N-dimethylformamide (60 mL) was heated to 40C and iodine chloride (2.82 g, 17.35 mmol) was added. After stirring at 40C for 3 hours, a second lot of iodine chloride (2.82 g, 17.35 mmol) was added and the mixture was stirred overnight at 40C. The mixture was cooled to room temperature and quenched with ice cold water. The mixture was extracted with ethyl acetate (100 mL x 2) and the organic layer was washed with water and brine, dried over sodium sulfate, filtered, and concentrated. Purification by column chromatography (silica gel, 20 % ethyl acetate in hexane) afforded the title compound. LCMS: 334.6 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | [00253j 27B. 4-Bromo-5-chloro-2-methoxypyridine: To MeOH (390 mL) at 0 °C was added TMS-C1 (49.0 mL, 386 mmol). The reaction mixture was warmed to rt and stirred for 30 mm. To this solution was added 27A (20.0 g, 96.0 mmol). The reaction mixturewas stirred for 15 mill and then NaNO2 (2.74 g, 39.8 mmol) was added to the mixture at rt. The reaction mixture was stirred at 50 °C for 3 h. The reaction mixture was concentrated. The residue was diluted with EtOAc and then basified to pH = 11-13 with 1 N aq. NaOH and extracted with EtOAc (3x). The combined organic layers wereconcentrated. Purification by recrystallization from MeOH and water afforded 27B as white needles (18.0 g, 81.0 mmol, 84percent yield). LC-MS Anal. Calc?d for C6H5BrC1NO:220.92, found [M+H] 223.9. | |
84% | 81B. 4-Bromo-5-chloro-2-methoxypyridine To MeOH (390 mL) was added chlorotrimethylsilane (49 mL, 386 mmol) at 0° C., and the solution was warmed to rt and stirred for 30 min. To the resulting solution was added 4-bromo-5-chloropyridin-2-amine (20 g, 96 mmol), and the mixture was stirred for 15 min. To the reaction mixture was added sodium nitrite (2.7 g, 40 mmol) and the solution was stirred at 50° C. for 3 h. The reaction mixture was evaporated in vacuo, and the residue was diluted with EtOAc. The pH of the aqueous layer was adjusted to pH=?12 via addition of 1 N NaOH, and the solution was extracted 3* with EtOAc. The combined organic layers were concentrated, and the residue was purified via recrystallization from MeOH and H2O to give 4-bromo-5-chloro-2-methoxypyridine as white crystalline needles (18 g, 81 mmol, 84percent yield). LC-MS Anal. Calc'd for C6H5BrClNO 222.92. found [M+H] 223.9. 1H NMR (400 MHz, CDCl3) delta 8.18 (s, 1H), 7.08 (s, 1H), 3.94 (s, 4H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate; In N,N-dimethyl-formamide; at 80℃; for 16h;Inert atmosphere; | Example 210A 5-chloro-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine A mixture of <strong>[1187449-01-9]4-bromo-5-chloropyridin-2-amine</strong> (7 g, 33.7 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(1,3,2-dioxaborolane) (25.7 g, 101 mmol) and potassium acetate (4.97 g, 50.6 mmol) in N,N-dimethylformamide (200 mL) was stirred under nitrogen atmosphere. Pd(dppf)Cl2.dichloromethane adduct (0.741 g, 1.012 mmol) was added rapidly to the suspension. The resulting suspension was stirred at about 80° C. for 16 hours. After cooling to room temperature, the suspension was filtered and the filtrate was diluted with water. The aqueous layer was back extracted with methylene chloride (3*50 mL). The combined aqueous layers were concentrated. The crude product was washed with ethanol and filtered. The filtrate was combined with the organic layer from the previous extraction and concentrated in vacuo to afford the title compound (?60percent purity by 1HNMR analysis). MS (ESI+) m/z 255.1 (M+H)+. |
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