Structure of 1050501-88-6
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CAS No. : | 1050501-88-6 |
Formula : | C5H4BrClN2 |
M.W : | 207.46 |
SMILES Code : | NC1=CC=C(Cl)N=C1Br |
MDL No. : | MFCD11504927 |
InChI Key : | OPKKXWUGXHSFQI-UHFFFAOYSA-N |
Pubchem ID : | 45480430 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 41.35 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.91 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.6 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.16 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.09 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.19 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.03 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.81 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.98 |
Solubility | 0.217 mg/ml ; 0.00105 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.61 |
Solubility | 0.51 mg/ml ; 0.00246 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.14 |
Solubility | 0.15 mg/ml ; 0.000724 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.03 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.11 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | With triethylamine;dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In toluene; at 80℃; under 37503.8 Torr; for 16h;Inert atmosphere; autoclave; | A solution of <strong>[1050501-88-6]2-bromo-6-chloro-pyridin-3-ylamine</strong> (1.0 g, 4.8 mmol) in ethanol (15 ml) and toluene (15 ml) was charged under argon atmosphere with (1,1'-bis(diphenylphosphino)-ferrocene)palladium(II) dichloride complex with dichloromethane (200 mg ; 0.245 mmol) and triethylamine (1.67 ml, 12.1 mmol) in an autoclave, was flushed with carbon monoxide (3 times, 20 bar) and stirred at 80 C. under carbon monoxide atmosphere (50 bar) for 16 h. Upon cooling to ambient temperature and pressure release, the reaction mixture was filtrated and the solvents were removed. The product was obtained after purification by silica gel chromatography using a dichloromethane /methanol /ammonia gradient and recrystallisation from dichloromethane as light yellow solid (290 mg, 30%). |
30% | With triethylamine;dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In toluene; at 80℃; under 15001.5 - 37503.8 Torr; for 16h;Inert atmosphere; autoclave; | A solution of <strong>[1050501-88-6]2-bromo-6-chloro-pyridin-3-ylamine</strong> (1.0 g, 4.8 mmol) in ethanol (15 ml) and toluene (15 ml) was charged under argon atmosphere with (l,l'-bis(diphenylphosphino)- ferrocene)palladium(II) dichloride complex with dichloromethane (200 mg; 0.245 mmol) and triethylamine (1.67 ml, 12.1 mmol) in an autoclave, was flushed with carbon monoxide (3 times, 20 bar) and stirred at 80 C under carbon monoxide atmosphere (50 bar) for 16 h. Upon cooling to ambient temperature and pressure release, the reaction mixture was filtrated and the solvents were removed. The product was obtained after purification by silica gel chromatography using a dichloromethane/methanol/ammonia gradient and recrystallisation from dichloromethane as light yellow solid (290 mg, 30%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82.6% | With palladium diacetate; triethylamine; In N,N-dimethyl-formamide; at 100℃; | Step 2: synthesis of 5-chloro-lH-pyrrolo[3,2-b]pyridine-2-carboxylic acid 11-b2-oxopropanoic acid (36.22 g, 411.31 mmol), palladium(II)acetate (7.74 g, 34.15 mmol) and Et3N (69.11 g, 682.94 mmol) were added to a solution of 2-bromo-6- chloropyridin-3 -amine 11-a (32.20 g, 155.21 mmol) and TPP (35.83 g, 136.59 mmol) in dry DMF (300 ml). The reaction mixture was stirred at 100C overnight. The solvent was then evaporated, water was added and the water layer was washed with EtOAc. The water layer was acidified with cone. HCl. The precipitate was filtered off and dried, yielding 25.21 g of the wanted product 11-b (82.6 %). m/z = 197.1 (M+H)+, CI pattern. |
82.6% | With palladium diacetate; triethylamine; triphenylphosphine; In N,N-dimethyl-formamide; at 100℃; | 2-oxopropanoic acid (36.22 g, 411.31 mmol), palladium(II)acetate (7.74 g, 34.15 mmol) and Et3N (69.11 g, 682.94 mmol) were added to a solution of 2-bromo-6- chloropyridin-3-amine 28-b (32.20 g, 155.21 mmol) and TPP (35.83 g, 136.59 mmol) in dry DMF (300 ml). The reaction mixture was stirred at 100C overnight. The solvent was then evaporated, water was added and the water layer was washed with EtOAc. The water layer was acidified with cone. HC1. The precipitate was filtered off and dried, yielding 25.21 g of the intermediate 28-c (82.6 %) |
82.6% | With palladium diacetate; triethylamine; triphenylphosphine; In N,N-dimethyl-formamide; at 100℃; | 2-oxopropanoic acid (36.22 g, 411.31 mmol), palladium(II)acetate (7.74 g,34.15 mmol) and Et3N (69.11 g, 682.94 mmol) were added to a solution of<strong>[1050501-88-6]2-bromo-6-chloropyridin-3-amine</strong> 49-a (32.20 g, 155.21 mmol) and TPP (35.83 g, 136.59 mmol)in dry DMF (300 ml). The reaction mixture was stirred at 100C overnight. The solvent was then evaporated, water was added and the water layer was washed withEtOAc. The water layer was acidified with cone. HCl. The precipitate was filtered offand dried, yielding 25.21 g of the wanted product 49-b (82.6 %).m/z = 197.1 (M+It. |
82.6% | With palladium diacetate; triethylamine; triphenylphosphine; In N,N-dimethyl-formamide; at 100℃; | Step 2: synthesis of 5-chloro-1H-pyrrolo[3,2-bjpyridine-2-carboxylic acid (intermediate 20b)2-oxopropanoic acid (36.22 g, 411.31 mmol), palladium(II)acetate (7.74 g, 34.15 mmol) and Et3N (69.11 g, 682.94 mmol) were added to a solution of 2-bromo-6- chloropyridin-3-amine 20a (32.20 g, 155.21 mmol) and TPP (35.83 g, 136.59 mmol) in dry DMF (300 ml). The reaction mixture was stirred at 100C overnight. The solvent was then evaporated, water was added and the water layer was washed with EtOAc.The water layer was acidified with conc. HC1. The precipitate was filtered off and dried, yielding 25.21 g of the wanted product 20b (82.6 %). m/z = 197.1 (M+H), Cl pattern. |
82.6% | With palladium diacetate; triethylamine; triphenylphosphine; In water; N,N-dimethyl-formamide; at 100℃; | 2-oxopropanoic acid (36.22 g, 411.31 mmol), palladium(II)acetate (7.74 g, 34.15 mmol) and Et3N (69.11 g, 682.94 mmol) were added to a solution of <strong>[1050501-88-6]2-bromo-6-chloropyridin-3-amine</strong> 49-a (32.20 g, 155.21 mmol) and TPP (35.83 g, 136.59 mmol) in dry DMF (300 ml). The reaction mixture was stirred at 100 C. overnight. The solvent was then evaporated, water was added and the water layer was washed with EtOAc. The water layer was acidified with conc. HCl. The precipitate was filtered off and dried, yielding 25.21 g of the wanted product 49-b (82.6%). m/z=197.1 (M+1)+. |
With palladium diacetate; triethylamine; triphenylphosphine; In N,N-dimethyl-formamide; at 115℃; for 18h;Inert atmosphere; | To the mixture of <strong>[1050501-88-6]2-bromo-6-chloropyridin-3-amine</strong> (5 g, 24.4 mmol), Pd(OAc)2 (1.09 g, 4.88 mmol), PPh3 (1.91 g, 7.32 mmol) and triethylamine (10.8 g, 107.3 mmol) in DMF (30 mL) in N2 atmosphere, was added 2-oxopropanoic acid (5.69 g, 64.6 mmol) by a syringe. The resulting mixture was heated at 115C for l8hrs under N2. The reaction mixture was cooled to room temperature and poured into water (200 mL) The resulting precipitate was filtered and the filtrate was washed with EA(30 mL x 3). The pH of aqueous phase was adjusted with iN aq. HC1 solution to pH 4, and the resulting precipitate was collected by filtration and dried by reduced pressure to give 5-chloro-1H-pyrrolo[3,2-bjpyridine-2- carboxylic acid (2.44 g, 51%) as a solid. HPLC/UV purity: 90%; LC-MS (ESI): 197.1 (M + 1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99.8% | Step 1: synthesis of 2-bromo-6-chloropyridin-3-amine 11-aBromine (24.86 g, 155.57 mmol) was added to a solution of 6-chloropyridin-3 -amine (20.00 g, 155.57 mmol) and sodium acetate (25.52 g, 311.14 mmol) in acetic acid (383 ml). The reaction mixture was stirred at room temperature for 1 hour. Acetic acid was then evaporated. The residue was dissolved in EtOAc, washed with saturated aqueous Na2C03, water and brine. The organic layer was dried over MgS04, filtered and evaporated, yielding 32.20 g of the desired product 11-a (99.8%). m/z = 206.96 (M+H)+, Cl+Br pattern. | |
99.8% | With bromine; sodium acetate; acetic acid; at 20℃; for 1h; | Bromine (24.86 g, 155.57 mmol) was added to a solution of 6-chloropyridin-3 -amine 28-a (20.00 g, 155.57 mmol) and sodium acetate (25.52 g, 311.14 mmol) in acetic acid (383 ml). The reaction mixture was stirred at room temperature for 1 hour. Acetic acid was then evaporated. The residue was dissolved in EtOAc, washed with saturated aqueous Na2C03, water and brine. The organic layer was dried over MgSC^, filtered and evaporated, yielding 32.20 g of the desired intermediate 28-b (99.8%). |
99.8% | With bromine; sodium acetate; acetic acid; at 20℃; for 1h; | Bromine (24.86 g, 155.57 mmol) was added to a solution of6-chloropyridin-3-amine (20.00 g, 155.57 mmol) and sodium acetate (25.52 g, 311.14 mmol) in acetic acid(383 ml). The reaction mixture was stirred at room temperature for 1 hour. Acetic acidwas then evaporated. The residue was dissolved in EtOAc, washed with saturatedaqueous Na2C03, water and brine. The organic layer was dried over MgS04, filteredand evaporated, yielding 32.20 g of the desired product 49-a (99.8%). m/z = 206.96 (M+ It |
99.8% | With bromine; sodium acetate; acetic acid; at 25℃; for 1h; | Step 1: synthesis of 2-bromo-6-chloropyridin-3-amine (intermediate 20a)Bromine (24.86 g, 155.57 mmol) was added to a solution of 6-chloropyridin-3-amine(20.00 g, 155.57 mmol) and sodium acetate (25.52 g, 311.14 mmol) in acetic acid(383 ml). The reaction mixture was stirred at room temperature for 1 hour. Acetic acidwas then evaporated. The residue was dissolved in EtOAc, washed with saturatedaqueous Na2CO3, water and brine. The organic layer was dried over MgSO4, filteredand evaporated, yielding 32.20 g of the desired product 20a (99.8%). m/z = 206.96 (M+H), Cl+Br pattern. |
99.8% | With bromine; sodium acetate; acetic acid; In ethyl acetate; at 20℃; for 1h; | Bromine (24.86 g, 155.57 mmol) was added to a solution of 6-chloropyridin-3-amine (20.00 g, 155.57 mmol) and sodium acetate (25.52 g, 311.14 mmol) in acetic acid (383 ml). The reaction mixture was stirred at room temperature for 1 hour. Acetic acid was then evaporated. The residue was dissolved in EtOAc, washed with saturated aqueous Na2CO3, water and brine. The organic layer was dried over MgSO4, filtered and evaporated, yielding 32.20 g of the desired product 49-a (99.8%). m/z=206.96 (M+1)+ |
With bromine; sodium acetate; acetic acid; at 20℃; for 18h; | To a mixture of 6-chloropyridin-3-amine (5 g, 38.9 mmol) and NaOAc (6.37 g, 77.8 mmol) in AcOH (30 mL) was added a solution of bromine (6.8 g, 42.8 mmol) in AcOH(5 mL) . The resulting reaction mixture was stirred at room temperature for 1 8hrs. Acetic acid was removed under reduced pressure to give the residue, which was dissolved into EA (50 mL), washed by NaHCO3 aqueous (20 mL x 5), water and brine. The organic layers was dried over Na2SO4, and the drying agent was filtered off. The filtrate was concentrated in vavuo to give the crude product, which was purified by silica gel chromatography (silica gel, eluting with 5% methanol in DCM) to give (5 g, 62%) as an orange solid. HPLC/UV purity: 90%; LC-MS (ESI): 207.3 (M + 1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Ca. 100% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In 1,2-dimethoxyethane; water; at 90℃; for 3h;Inert atmosphere; | <strong>[1050501-88-6]2-bromo-6-chloropyridin-3-amine</strong> (4.52 g, 21.79 mmol), (2,6-dimethoxyphenyl)boronic acid (4.76 g, 26.1 mmol), Na2CO3 (4.62 g, 43.6 mmol), 1,2-dimethoxyethane (80 mL), and water (40 mL) were added to a 500 mL two-necked round-bottom flask equipped with a magnetic stir bar. The reaction mixture was degassed with N2 for 15 minutes. After this time. Pd(PPh3)4 (1.26 g, 1.09 mmol) was added and the reaction flask was placed into an oil bath and gradually heated to 90 C. for 3 hours. The reaction mixture was then cooled to room temperature (22 C.) and then diluted with ethyl acetate (EtOAc). The resulting mixture was then washed with brine and the separated organic layer were dried over Na2SO4, filtered and concentrated in vacuo. The crude product was triturated with CH2Cl2 to yield the title compound as pale pink solid (4.0 g). The remaining filtrate was purified via flash chromatography on a 200 g column (50-75% EtOAc/Heptanes) to provide 6-chloro-2-(2,6-dimethoxyphenyl)pyridin-3-amine as a white solid (2.5 g) (overall yield 100% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
53% | With tert.-butylnitrite; In 1,2-dichloro-ethane; at 20 - 40℃; | t-butyl nitrite (5.15 g, 45 mmol, 1.5 eq) was added to a solution of 54 diethyldisulfide (7.3 g, 60 mmol, 2 eq) dissolved in 55 dichloroethane (100 ml), and then heated to 40 C. 56 <strong>[1050501-88-6]3-amino-2-bromo-6-chloropyridine</strong> (6.18 g, 30 mmol, 1.0 eq) was dropwise added thereto, and then stirred overnight at room temperature. 33 Water was added to the reaction solution mentioned above, and then extraction with chloroform was carried out. The obtained organic layer was washed with a saturated aqueous solution of 24 sodium chloride, dried over anhydrous magnesium sulfate, and then filtered. The filtrate was concentrated under reduced pressure, and the obtained residue was purified by column chromatography with silica gel. Thereby, the objective 57 product was obtained in an amount of 4.02 g (yield 53%).1H-NMR of the obtained objective product is shown below.1H-NMR (400 MHz, CDCl3) delta: 7.42 (1H, d), 7.26 (1H, d), 2.95 (2H, q), 1.39 (3H, t). |
4 g | Step P2.01 : Preparation of 2-bromo-6-chloro- -ethylsulfanyl-pyridine (0638) A solution of (ethyldisulfanyl)ethane (48 mmol, 5.9 g, 5.9 mL) and tert-butyl nitrite (36 mmol, 3.7 g, 4.3 mL) in 1 ,2-dichloroethane (100 ml) was heated at 40C. To this solution was added, slowly over 60 min, a solution of <strong>[1050501-88-6]2-bromo-6-chloro-pyridin-3-amine</strong> (commercialy available (CAS 1050501-88-6), 24 mmol, 5.0 g) in 1 ,2-dichloroethane (100 ml). The reaction was stirred at 40C for 3 h. Then, the reaction was diluted with water (10 ml), extracted with ethyl acetate (3x30 ml). Combined organic layer was dried over sodium sulfate, filtered and concentrated under reduced pressure. The crude product was purified by combiflash (silica gel, 20% EA-cyclohexane) to afford 2-bromo-6-chloro-3- ethylsulfanyl-pyridine (16 mmol, 4.0 g). -NMR (CDCb, ppm) delta 7.42 (d, 1 H), 7.25(d, 1 H), 2.95 (q, 2H), 1.38 (t, 3H). |
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