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Chemical Structure| 1000577-76-3 Chemical Structure| 1000577-76-3

Structure of 1000577-76-3

Chemical Structure| 1000577-76-3

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Product Details of [ 1000577-76-3 ]

CAS No. :1000577-76-3
Formula : C7H2BrClFN
M.W : 234.45
SMILES Code : N#CC1=CC(Br)=CC(Cl)=C1F
MDL No. :MFCD09800811
InChI Key :CFAJQDDAWJDDIX-UHFFFAOYSA-N
Pubchem ID :26598341

Safety of [ 1000577-76-3 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H312-H332
Precautionary Statements:P280

Computational Chemistry of [ 1000577-76-3 ] Show Less

Physicochemical Properties

Num. heavy atoms 11
Num. arom. heavy atoms 6
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 2.0
Num. H-bond donors 0.0
Molar Refractivity 43.82
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

23.79 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.03
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

3.06
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

3.53
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

3.2
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

3.54
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

3.07

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.63
Solubility 0.0556 mg/ml ; 0.000237 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-3.23
Solubility 0.139 mg/ml ; 0.000594 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-4.24
Solubility 0.0136 mg/ml ; 0.0000578 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Moderately soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-5.56 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.04

Application In Synthesis of [ 1000577-76-3 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 1000577-76-3 ]

[ 1000577-76-3 ] Synthesis Path-Downstream   1~23

  • 1
  • [ 1000577-76-3 ]
  • C7H5BrClN3 [ No CAS ]
  • 2
  • C7H4BrClFNO [ No CAS ]
  • [ 1000577-76-3 ]
  • 3
  • [ 1000577-76-3 ]
  • [ 73183-34-3 ]
  • [ 1383985-27-0 ]
YieldReaction ConditionsOperation in experiment
100% With potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 110℃; for 1h;Microwave irradiation; Inert atmosphere; Intermediate 573-Chloro-2-fluoro-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzonitrile; is A suspension of <strong>[1000577-76-3]5-bromo-3-chloro-2-fluorobenzonitrile</strong> (0.959 g, 4.09 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(1,3,2-dioxaborolane) (2.08 g, 8.18 mmol), [1,1'-bis(diphenylphosphino)-ferrocene]palladium(II) chloride (0.234 g, 0.29 mmol), and potassium acetate (1.20 g, 12.3 mmol) in dioxane (15 mL), was placed in a microwave vial. The mixture was degassed with a stream of argon for a couple of min, and the reaction mixture was then heated to 110 C. for 1 h in a microwave reactor. The reaction mixture was cooled to r.t., filtered through diatomaceous earth, and extracted with EtOAc. The organic phase was washed with brine, dried over MgSO4 and concentrated in vacuo. The residue was purified by flash chromatography using heptane/EtOAc (70/30) as eluent to give the title compound (1.22 g, quantitative yield): GC MS (EI) m/z 282 M+.
  • 4
  • [ 110-91-8 ]
  • [ 1000577-76-3 ]
  • [ 1386460-01-0 ]
YieldReaction ConditionsOperation in experiment
With caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;palladium diacetate; In toluene; at 140℃; for 0.5h;microwave irradiation; A suspension of 5-Bromo-3-chloro-2-fluoro-benzonitrile (200 mg, 0.85 mmol), morpholine (74 mg, 0.85 mmol), caesium carbonate (389 mg, 1.2 mmol), palladium(ll) acetate (10 mg, 0.04 mmol) and 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (35 mg, 0.06 mmol) in toluene (5 mL) was sealed in a microwave vial and heated for 30 min at 140C (Emrys Optimizer; personal chemistry). The reaction mixture was quenched by addition of saturated aqueous NaHC03, extracted with EtOAc, dried (Na2S04) and the solvent was removed in vacuo to give the title compound which was used without further purification in the next step. TLC Rf (hexane/EtOAc 1 : 1) = 0.60 ; tR (HPLC conditions c): 5.28 min.
  • 5
  • [ 1000577-76-3 ]
  • [ 1386459-84-2 ]
YieldReaction ConditionsOperation in experiment
To a solution of <strong>[1000577-76-3]5-bromo-3-chloro-2-fluorobenzonitrile</strong> (13.2 g, 56.3 mmol) in THF (200 ml_) was added under an argon atmosphere a 1 M solution of boran-tetrahydrofuran-complex (70.4 ml_, 70.4 mmol) dropwise over 30 min. The reaction mixture was then heated at 65C for 1.5 h. After cooling to RT, a 2N HCI solution (70.4 ml_, 141 mmol) was added dropwise over 30 min. The reaction mixture was then again heated at 65C for 1 h and subsequently cooled to RT. Volatiles were evaporated and the residue was taken up in 1 M aqueous HCI solution, followed by extraction with EtOAc (3x150 ml_). The combined organics were washed with 1 M aqueous HCI solution. The combined acid phases were basified to pH=12 by addition of 4M aqueous NaOH solution and then extracted with EtOAc (3x150 ml_). The organics were dried (Na2S04), filtered and evaporated in vacuo to afford the title compound as a yellowish oil. MS (LC/MS): 238.0 [M+H]+; tR (HPLC conditions c): 3.25 min. The material thus obtained was used directly in the next step without further purification
  • 6
  • [ 1000577-76-3 ]
  • [ 1386459-85-3 ]
  • 7
  • [ 1000577-76-3 ]
  • [ 1386459-86-4 ]
  • 8
  • [ 1000577-76-3 ]
  • [ 1386459-87-5 ]
  • 9
  • [ 1000577-76-3 ]
  • [ 1386461-57-9 ]
  • 10
  • [ 1000577-76-3 ]
  • [ 1386459-88-6 ]
  • 11
  • [ 1000577-76-3 ]
  • [ 1386459-89-7 ]
  • 12
  • [ 1000577-76-3 ]
  • 3-chloro-2-fluoro-5-(2H-tetrazol-5-yl)-benzylamine hydrochloride [ No CAS ]
  • 13
  • [ 1000577-76-3 ]
  • [ 1386459-91-1 ]
  • 14
  • [ 1000577-76-3 ]
  • [ 1386459-92-2 ]
  • 15
  • [ 1000577-76-3 ]
  • [ 1386459-93-3 ]
  • 16
  • [ 1000577-76-3 ]
  • [ 1386460-02-1 ]
  • 17
  • [ 1000577-76-3 ]
  • [ 1386460-03-2 ]
  • 18
  • [ 1000577-76-3 ]
  • [ 1386460-04-3 ]
  • 19
  • [ 1000577-76-3 ]
  • [ 1386460-05-4 ]
  • 20
  • [ 1000577-76-3 ]
  • [ 1386460-06-5 ]
  • 21
  • [ 1000577-76-3 ]
  • [ 1386460-19-0 ]
  • 22
  • [ 1000577-76-3 ]
  • [ 1386460-20-3 ]
  • 23
  • [ 1280786-80-2 ]
  • [ 1000577-76-3 ]
YieldReaction ConditionsOperation in experiment
4.21 g With ammonium hydroxide; iodine; In tetrahydrofuran; at 20℃; for 16h; Iodine (10.0 g, 40 mmol, 2.0 eq.) was added to a mixture of <strong>[1280786-80-2]5-bromo-3-chloro-2-fluorobenzaldehyde</strong> (4.6 g, 20 mmol, 1.0 eq.) in tetrahydrofuran (20 mL) and ammonium hydroxide (20 mL), and the reaction solution was stirred at room temperature for 16 h. The reaction was quenched with a sodium bisulfite solution (20 mL), and then ethyl acetate (50 mL*2) was added for extraction. The organic phases were combined, washed with saturated brine (10 mL*2), dried over anhydrous sodium sulfate, filtered, and concentrated to give 5-bromo-3-chloro-2-fluorobenzonitrile (4.21 g, 93%), which was a yellow solid when cooled, and was directly used in the next step without purification.
 

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