Structure of 1000577-76-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1000577-76-3 |
Formula : | C7H2BrClFN |
M.W : | 234.45 |
SMILES Code : | N#CC1=CC(Br)=CC(Cl)=C1F |
MDL No. : | MFCD09800811 |
InChI Key : | CFAJQDDAWJDDIX-UHFFFAOYSA-N |
Pubchem ID : | 26598341 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H312-H332 |
Precautionary Statements: | P280 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 43.82 |
TPSA ? Topological Polar Surface Area: Calculated from |
23.79 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.03 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.06 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.53 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.2 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.54 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.07 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.63 |
Solubility | 0.0556 mg/ml ; 0.000237 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.23 |
Solubility | 0.139 mg/ml ; 0.000594 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.24 |
Solubility | 0.0136 mg/ml ; 0.0000578 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.56 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.04 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With potassium acetate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In 1,4-dioxane; at 110℃; for 1h;Microwave irradiation; Inert atmosphere; | Intermediate 573-Chloro-2-fluoro-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzonitrile; is A suspension of <strong>[1000577-76-3]5-bromo-3-chloro-2-fluorobenzonitrile</strong> (0.959 g, 4.09 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(1,3,2-dioxaborolane) (2.08 g, 8.18 mmol), [1,1'-bis(diphenylphosphino)-ferrocene]palladium(II) chloride (0.234 g, 0.29 mmol), and potassium acetate (1.20 g, 12.3 mmol) in dioxane (15 mL), was placed in a microwave vial. The mixture was degassed with a stream of argon for a couple of min, and the reaction mixture was then heated to 110 C. for 1 h in a microwave reactor. The reaction mixture was cooled to r.t., filtered through diatomaceous earth, and extracted with EtOAc. The organic phase was washed with brine, dried over MgSO4 and concentrated in vacuo. The residue was purified by flash chromatography using heptane/EtOAc (70/30) as eluent to give the title compound (1.22 g, quantitative yield): GC MS (EI) m/z 282 M+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene;palladium diacetate; In toluene; at 140℃; for 0.5h;microwave irradiation; | A suspension of 5-Bromo-3-chloro-2-fluoro-benzonitrile (200 mg, 0.85 mmol), morpholine (74 mg, 0.85 mmol), caesium carbonate (389 mg, 1.2 mmol), palladium(ll) acetate (10 mg, 0.04 mmol) and 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (35 mg, 0.06 mmol) in toluene (5 mL) was sealed in a microwave vial and heated for 30 min at 140C (Emrys Optimizer; personal chemistry). The reaction mixture was quenched by addition of saturated aqueous NaHC03, extracted with EtOAc, dried (Na2S04) and the solvent was removed in vacuo to give the title compound which was used without further purification in the next step. TLC Rf (hexane/EtOAc 1 : 1) = 0.60 ; tR (HPLC conditions c): 5.28 min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of <strong>[1000577-76-3]5-bromo-3-chloro-2-fluorobenzonitrile</strong> (13.2 g, 56.3 mmol) in THF (200 ml_) was added under an argon atmosphere a 1 M solution of boran-tetrahydrofuran-complex (70.4 ml_, 70.4 mmol) dropwise over 30 min. The reaction mixture was then heated at 65C for 1.5 h. After cooling to RT, a 2N HCI solution (70.4 ml_, 141 mmol) was added dropwise over 30 min. The reaction mixture was then again heated at 65C for 1 h and subsequently cooled to RT. Volatiles were evaporated and the residue was taken up in 1 M aqueous HCI solution, followed by extraction with EtOAc (3x150 ml_). The combined organics were washed with 1 M aqueous HCI solution. The combined acid phases were basified to pH=12 by addition of 4M aqueous NaOH solution and then extracted with EtOAc (3x150 ml_). The organics were dried (Na2S04), filtered and evaporated in vacuo to afford the title compound as a yellowish oil. MS (LC/MS): 238.0 [M+H]+; tR (HPLC conditions c): 3.25 min. The material thus obtained was used directly in the next step without further purification |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4.21 g | With ammonium hydroxide; iodine; In tetrahydrofuran; at 20℃; for 16h; | Iodine (10.0 g, 40 mmol, 2.0 eq.) was added to a mixture of <strong>[1280786-80-2]5-bromo-3-chloro-2-fluorobenzaldehyde</strong> (4.6 g, 20 mmol, 1.0 eq.) in tetrahydrofuran (20 mL) and ammonium hydroxide (20 mL), and the reaction solution was stirred at room temperature for 16 h. The reaction was quenched with a sodium bisulfite solution (20 mL), and then ethyl acetate (50 mL*2) was added for extraction. The organic phases were combined, washed with saturated brine (10 mL*2), dried over anhydrous sodium sulfate, filtered, and concentrated to give 5-bromo-3-chloro-2-fluorobenzonitrile (4.21 g, 93%), which was a yellow solid when cooled, and was directly used in the next step without purification. |
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