Structure of 1000342-95-9
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CAS No. : | 1000342-95-9 |
Formula : | C8H4BrF3N2 |
M.W : | 265.03 |
SMILES Code : | FC(F)(F)C1=CC(Br)=C2C=NNC2=C1 |
MDL No. : | MFCD09026956 |
InChI Key : | JRUCLQINUHVRJW-UHFFFAOYSA-N |
Pubchem ID : | 24729232 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 48.8 |
TPSA ? Topological Polar Surface Area: Calculated from |
28.68 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.47 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.13 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
4.5 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.9 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.65 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.13 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.86 |
Solubility | 0.0362 mg/ml ; 0.000137 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.4 |
Solubility | 0.105 mg/ml ; 0.000397 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.65 |
Solubility | 0.00592 mg/ml ; 0.0000223 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.69 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.76 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With toluene-4-sulfonic acid; In tetrahydrofuran; for 18h;Inert atmosphere; Reflux; | Referential example 25 (l-(Tetrahydro-2H-pyran-2-yl)-6-(trifluoromethyl)-lH-indazol-4-yl)methanamine (127) step 1 : A round-bottom flask was charged with 4-bromo-6-(trifluoromethyl)-lH-indazole (1.00 g, 3.8 mmol), TsOH monohydrate (27 mg, 0.15 mmol), 3,4-dihydro-2H-pyran (1.59 g, 18.9 mmol), and THF (25 mL). The reaction mixture was degassed with nitrogen and heated under reflux for 18 h, and then the solvent was removed in vacuo. The residue was purified by S1O2 chromatography to afford 4-bromo-l - (tetrahydro-2H-pyran-2-yl)-6-(trifluoromethyl)-lH-indazole (1.03 g, 78percent) as a yellow oil. MS (ESI) m/z: 265.2 [(M - THP group)+l]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | EXAMPLE 130: N-(2-hydroxyethyl)-4-(6-(trifiuoromethyl)-lH-indazol-4- yl)benzamide [0550] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.300 g, 1.132 mmol), (4-((2-hydroxyethyl)carbamoyl)phenyl)boronic acid (0.237 g, 1.132 mmol) and PdCl2(dppf) (0.041 g, 0.057 mmol) in dioxane (10 mL) and aqueous saturated NaHC03 (3 mL). The resulting yellow suspension was heated at 140°C for 60 minutes in a microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was purified by preparative HPLC, eluting with 40percent> ACN (containing 0.035percent) TFA) in H20 (containing 0.05percent TFA) over a period of 4.5 minutes. The product-containing fractions were combined and volatiles removed in vacuo to give a TFA salt of the title compound as white solid (0.12 g, 30percent). 1H NMR (400 MHz, CD3OD) delta ppm 3.56 (t, J=5.81 Hz, 2 H), 3.75 (t, J=5.81 Hz, 2 H), 7.49 (d, J=1.01 Hz, 1 H), 7.78-7.89 (m, 2 H), 7.93 (s, 1 H), 8.00-8.10 (m, 2 H), 8.21-8.32 (m, 1 H); ESI-MS m/z [M+H]+ calc'd for Ci7Hi4F3N302, 350.1; found 350.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | EXAMPLE 246: 4 2-methoxypyrimidin-5-yl)-6-(trifluoromethyl)-lH-indazole [0784] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.1 g, 0.377 mmol), (2-methoxypyrimidin-5-yl)boronic acid (0.076 g, 0.491 mmol) and PdCl2(dppf) (0.014 g, 0.019 mmol) in dioxane (8 mL) and aqueous saturated NaHC03 (2 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in a microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was purified by preparative HPLC, eluting with a gradient of 35-40percent ACN (containing 0.035percent TFA) in H20 (containing 0.05percent TFA) over a period of 8 minutes. The volatiles were removed in vacuo to give a TFA salt of the title compound as white solid (0.043 g, 39percent). 1H NMR (400 MHz, DMSO-<) delta ppm 4.03 (s, 3 H), 7.60 (d, J=1.01 Hz, 1 H), 8.00 (s, 1 H), 8.34-8.52 (m, 1 H), 9.06 (s, 2 H); ESI-MS m/z [M+H]+ calc'd for Ci3H9F3N40, 295.1; found 295.15. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4% | EXAMPLE 248 : 4-(3 ,6-dimethoxypyridazin-4-yl)-6-(trifluoromethyl)- lH-indazole [0788] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.15 g, 0.566 mmol),(3,6-dimethoxypyridazin-4-yl)boronic acid (0.135 g, 0.736 mmol) and PdCl2(dppf) (0.021 g, 0.028 mmol) in dioxane (10 mL) and aqueous saturated NaHC03 (3 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in a microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was purified by preparative HPLC, eluting with a gradient of 40-45percent ACN (containing 0.035percent TFA) in H20 (containing 0.05percent TFA) over a period of 6.5 minutes. The volatiles were removed in vacuo to give a TFA salt of the title compound as a light brown solid (8 mg, 4percent). 1H NMR (400 MHz, DMSO-d6) delta ppm 3.97 (s, 3 H), 4.03 (s, 3 H), 7.42 (s, 1 H), 7.55 (d, J=1.01 Hz, 1 H), 8.05 (s, 1 H), 8.14 (s, 1 H), 13.74 (s, 1 H); ESI-MS m/z [M+H]+ calc'd for Ci4HiiF3N402, 325.1; found 325.16. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
47% | EXAMPLE 249: 4-(6-methoxy-2-methylpyridin-3-yl)-6-(trifluoromethyl)-lH- indazole [0790] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.15 g, 0.566 mmol), (6-methoxy-2-methylpyridin-3-yl)boronic acid (0.123 g, 0.736 mmol) and PdCl2(dppf) (0.021 g, 0.028 mmol) in dioxane (10 mL) and aqueous saturated NaHC03 (3 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was purified by preparative HPLC, eluting with 45percent ACN (containing 0.035percent) TFA) in H20 (containing 0.05percent TFA) over a period of 6.5 minutes. The volatiles were removed in vacuo to give a TFA salt of the title compound as a light brown oil (82 mg, 47percent). 1H NMR (400 MHz, OMSO-de) delta ppm 2.30 (s, 3 H), 3.93 (s, 3 H), 6.75-6.86 (m, 1 H), 7.29 (d, J=1.26 Hz, 1 H), 7.72 (d, J=8.34 Hz, 1 H), 7.90-8.03 (m, 2 H); ESI-MS m/z [M+H]+ calc'd for Ci5Hi2F3N30, 308.1; found 308.15. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
37% | EXAMPLE 260: ethyl 2-(4-(6-(trifluoromethyl)-lH-indazol-4-yl)-lH-pyrazol-l- yl)acetate [0812] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.3 g, 1.132 mmol), ethyl 2-(4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-pyrazol-l- yl)acetate (0.349 g, 1.245 mmol) and PdCl2(dppf) (0.041 g, 0.057 mmol) in dioxane (10 mL) and aqueous saturated NaHC03 (3 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in a microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was purified by preparative HPLC, eluting with a gradient of 40-45percent ACN (containing 0.035percent TFA) in H20 (containing 0.05percent TFA) over a period of 6.5 minutes. The product-containing fractions were combined and the volatiles were removed via rotary evaporation to give a TFA salt of the title compound as a light brown solid (0.14 g, 37percent). 1H NMR (400 MHz, OMSO-d6) delta ppm 1.24 (t, J=7.07 Hz, 3 H), 4.19 (q, J=7.16 Hz, 2 H), 5.15 (s, 2 H), 7.60 (d, J=1.01 Hz, 1 H), 7.77 (s, 1 H), 8.27 (d, J=0.76 Hz, 1 H), 8.53 (s, 1 H), 8.63 (s, 1 H), 13.64 (s, 1 H); ESI-MS m/z [M+H]+ calc'd for Ci5Hi3F3N402, 339.1; found 339. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
EXAMPLE 269: methyl 5-(6-(trifluoromethyl)-lH-indazol-4-yl)picolinate [0830] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.732 g, 2.76 mmol), (6-(methoxycarbonyl)pyridin-3-yl)boronic acid (0.5 g, 2.76 mmol) and PdCl2(dppf) (0.101 g, 0.138 mmol) in dioxane (10 mL) and aqueous saturated NaHC03 (3 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in a microwave reactor. The reaction mixture was subsequently concentrated. The residue was diluted with DCM, washed with water, and the volatiles removed via rotary evaporation. The crude product was purified by CombiFlash® chromatography (0-30percent MeOH in DCM over 180 minutes). The product-containing fractions were combined and concentrated by rotary evaporation to give product with some impurities (0.28 g). A portion of the product (20 mg) was re-purified by preparative HPLC, eluting with 40percent ACN (containing 0.035percent TFA) in H20 (containing 0.05percent TFA) over a period of 6.5 minutes to give a TFA salt of the title compound. 1H NMR (400 MHz, OMSO-d6) delta ppm 3.95 (s, 3 H), 7.69 (s, 1 H), 8.07 (s, 1 H), 8.23 (dd, J=8.21, 0.63 Hz, 1 H), 8.39-8.57 (m, 2 H), 9.10-9.26 (m, 1 H), 13.86 (br s, 1 H); ESI-MS m/z [M+H]+ calc'd for Ci5Hi0F3N3O2, 322.1; found 322.11. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
18.1% | EXAMPLE 339: 4-(3-fiuoro-lH-pyrrolo[2,3-b]pyridin-5-yl)-6-(trifluoromethyl)- lH-indazole [0970] A 20 mL microwave vial was charged with a mixture of 4-bromo-6- (trifluoromethyl)-lH-indazole (60 mg, 0.226 mmol), (3-fluoro-lH-pyrrolo[2,3-b]pyridin-5- yl)boronic acid (61.1 mg, 0.340 mmol) and PdCl2(dppf)CH2Ci2 (9.31 mg, 0.011 mmol) in dioxane (4 mL) and aqueous saturated NaHC03 (2 mL). The resulting brown suspension was heated at 130°C for 30 minutes in microwave reactor. The reaction mixture was subsequently purified by preparative HPLC, eluting with a gradient of 65-80percent acetonitrile (containing 0.035percent TFA) in H20 (containing 0.05percent TFA). The product fractions were collected and dried to give a TFA salt of the title compound as a dark purple solid (13.1 mg, 18.1percent>). 1H NMR (400 MHz, CD3OD) delta ppm 7.34 (d, J=2.27 Hz, 1 H), 7.50 (d, J=1.01 Hz, 1 H), 7.92 (s, 1 H), 8.29 (d, J=1.01 Hz, 1 H), 8.36 (d, J=2.02 Hz, 1 H), 8.62 (d, J=2.02 Hz, 1 H); ESI-MS m/z [M+H]+ calc'd for Ci5H8F4N4, 321.1; found 321.2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | EXAMPLE 1 : 4-phenyl-6-(trifluoromethyl)-lH-indazole [0290] A vessel was charged with 4-bromo-6-(trifluoromethyl)-lH-indazole (0.1 g, 0.377 mmol), phenylboronic acid (0.069 g, 0.566 mmol), PdCl2(dppf) (0.014 g, 0.019 mmol), and dioxane (3 mL). To the resulting slurry was added 2N aqueous sodium carbonate (0.377 mL, 0.755 mmol). The mixture was purged with nitrogen, heated in a microwave reactor at 120°C for 30 minutes, and then filtered through a pad of Celite, which was rinsed with methanol. The solvent was removed in vacuo, and the resulting residue was taken up in DMSO and methanol (1 : 1) and was purified via acidic preparative HPLC (Waters SunFire CI 8, 5muiotaeta, 30 mm ID x 75 mm column), eluting with a gradient of 55-80percent ACN (containing 0.035percent)TFA) in H20 (containing 0.05percent> TFA). The collected fractions were dried in vacuo to give a TFA salt of the title compound as a tan solid (35 mg, 35percent). 1H NMR (400 MHz, CDCls) delta ppm 7.43-7.62 (m, 4 H), 7.71 (d, J=7.07 Hz, 2 H), 7.83 (s, 1 H), 8.23-8.38 (m, 1 H), 8.47 (br s, 1 H); ESI-MS m/z [M+H]+ calc'd for C14H9F3N2, 263.1; found 263.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
72% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In dimethyl sulfoxide; at 100℃; for 2h;Microwave irradiation; Sealed tube; | PREPARATION xl : 4-(4,4,5,5-tetramethyl-l ,3,2-dioxaborolan-2-yl)-6- (trifluoromethyl)- 1 H-indazole [0142] A mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.5 g, 1.887 mmol), bis(pinacolato)diboron (0.958 g, 3.77 mmol), PdCl2(dppf) (0.028 g, 0.038 mmol), and potassium acetate (0.741 g, 7.55 mmol) in DMSO (10 mL) was charged to a microwave vial, which was sealed and heated at 100°C in an oil bath for 13 hours. LCMS indicated the presence of bromide starting material, so the reaction mixture was heated for an additional 7 hours, after which LCMS showed the bromide starting material had been consumed. The reaction mixture was combined with product from an earlier run, and was subsequently partitioned between ethyl acetate (30 mL) and aqueous saturated NH4CI (30 mL). The organic phase was washed sequentially with aqueous saturated NH4C1 (30 mL) and brine (30 mL) and was dried over anhydrous sodium sulfate. The solvents were removed in vacuo, and the resulting dark brown residue was purified by silica gel chromatography (Moritex size 60 silica gel column) eluting with a gradient of 5-30percent ethyl acetate in hexanes to give the title compound as a pale yellow solid (468 mg, 72percent for two runs). ESI-MS m/z [M+H]+ calc'd for Ci4Hi6BF3N202, 313.1; found 313.2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71.0% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; sodium hydrogencarbonate; In 1,4-dioxane; water; at 140℃; for 0.75h;Microwave irradiation; | EXAMPLE 263 : methyl 4-methoxy-3-(6-(trifluoromethyl)- lH-indazol-4- yl)benzoate [0818] A vial was charged with a mixture of 4-bromo-6-(trifluoromethyl)-lH-indazole (0.631 g, 2.381 mmol), (2-methoxy-5-(methoxycarbonyl)phenyl)boronic acid (0.5 g, 2.381 mmol) and PdCl2(dppf) (0.087 g, 0.119 mmol) in dioxane (10 mL) and aqueous saturated NaHCC"3 (3 mL). The resulting light brown suspension was heated at 140°C for 45 minutes in a microwave reactor. The reaction mixture was subsequently concentrated and the crude residue was diluted with DCM and washed with water, concentrated, and then purified by CombiFlash® chromatography, eluting with a gradient of 0-40percent MeOH in DCM over a period of 200 minutes. The product-containing fractions were combined and concentrated to give the title compound as a light brown solid (0.592 g, 71.0percent). 1H NMR (400 MHz, DMSO- d6) delta ppm 3.85 (s, 3 H), 3.84 (s, 3 H), 7.21-7.46 (m, 2 H), 7.89-7.99 (m, 3 H), 8.10 (dd, J=8.59, 2.27 Hz, 1 H), 13.62 (s, 1 H); ESI-MS m/z [M+H]+ calc'd for C17H13F3N2O3, 351.1; found 351.16 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69.5% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; sodium hydrogencarbonate; In 1,4-dioxane; at 140℃; for 0.333333h;Microwave irradiation; Sealed tube; | EXAMPLE 329: 3-(6-(trifluoromethyl)-lH-indazol-4-yl)benzenesulfonamide [0950] 4-Bromo-6-(trifluoromethyl)- lH-indazole (40 mg, 0.151 mmol), (3- sulfamoylphenyl)boronic acid (45.5 mg, 0.226 mmol), PdCl2(dppf) (11.04 mg, 0.015 mmol), sodium bicarbonate (323 mu, 0.604 mmol), and dioxane were mixed in a 10 mL vial to give an orange suspension. The vial was sealed and then heated to 140°C for 20 minutes in a microwave reactor. The reaction mixture was subsequently filtered and the product was purified by preparative HPLC, eluting with a gradient of 35-70percent ACN in H20 (containing 10 mM NH4HCO3). The pure fractions were lyophilized to give the title compound as a white solid (35.8 mg, 69.5percent). 1H NMR (400 MHz, DMSO-<) delta ppm 7.50 (s, 2 H), 7.53 (s, 1 H), 7.75-7.80 (m, 1 H), 7.92-7.94 (m, 1 H), 8.02 (s, 1 H), 8.06 (dt, J=8.02, 1.29 Hz, 1H), 8.21 (t, J=1.64 Hz, 1 H), 8.40 (s, 1 H); ESI-MS m/z [M+H]+ calc'd for C14H10F3N3O2S, 342.0; found 342.2. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; sodium hydrogencarbonate; In 1,4-dioxane; water; at 140℃; for 1h;Sealed tube; Microwave irradiation; | STEP A: 4-(6-chloro-2-methylpyridin-3-yl)-6-(trifluoromethyl)-lH-indazole [1111] The reaction was carried out in eight microwave vials. To each vial were added 4- bromo-6-(trifluoromethyl)-lH-indazole (0.5 g, 1.886 mmol), (6-chloro-2-methylpyridin-3- yl)boronic acid (0.3875 g, 2.264 mmol) and PdCl2(dppf) (0.069 g, 0.0944 mmol) in dioxane (12 mL) and aqueous saturated NaHC03 (3 mL). The resulting light-brown suspensions were each heated at 140°C for 60 minutes in a microwave reactor. The reaction mixtures were combined and concentrated and the crude residue was diluted with EtOAc and washed with water. The volatiles were removed via rotary evaporation and the product purified by CombiFlash® chromatography, eluting with a gradient of 0-100percent EtOAc in heptane over a period of 180 minutes. The product-containing fractions were combined and the volatiles removed via rotary evaporation to give the title compound (3.56 g, 76percent). ESI-MS m/z [M+H]+ calc'd for Ci4H9ClF3N3, 312.05; found 311.89. |
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