Structure of 96516-29-9
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 96516-29-9 |
Formula : | C7H4FNO3 |
M.W : | 169.11 |
SMILES Code : | FC1=C(C=O)C=CC=C1[N+](=O)[O-] |
MDL No. : | MFCD08669885 |
InChI Key : | WLDHPJSICUOHTH-UHFFFAOYSA-N |
Pubchem ID : | 10487325 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 40.61 |
TPSA ? Topological Polar Surface Area: Calculated from |
62.89 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.94 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.31 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.97 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.69 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.26 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.03 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.95 |
Solubility | 1.89 mg/ml ; 0.0112 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.23 |
Solubility | 0.993 mg/ml ; 0.00587 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.0 |
Solubility | 1.69 mg/ml ; 0.01 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.4 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
3.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.65 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With potassium fluoride; In N,N-dimethyl-formamide; at 150℃; for 5.0h; | To a solution of 2-chloro-3-nitrobenzaldehyde (9.5 g, 51.2 mmol) in DMF (100 mL) was added KF (8.9 g, 154 mmol). The reaction mixture was heated to 150 C and stirred at that temperature for 5 h. The reaction mixture was cooled to ambient temperature and concentrated in vacuo. The crude material was poured into H20 (400 mL) and extracted with DCM (100 mL x 4). The combined organic extracts were concentrated in vacuo and the crude material was purified by silica-gel column chromatography (petroleum ether/EtOAc, 20: 1) to give 2-fluoro-3- nitrobenzaldehyde as a yellow oil (6.7 g, yield: 77%). 1H NMR (400 MHz, CDCI3) d: 10.44 (s, 1H), 8.36-8.30 (m, 1H), 8.22-8.16 (m, 1H), 7.47 (t, J = 8.0 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In isopropyl alcohol; | EXAMPLE 19 Synthesis of 3-(N-benzyl-N-methylamino)-2,2-dimethylpropyl ethyl 2,6-dimethyl-4-(2-fluoro-3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate (162) A mixture of 184 mg of <strong>[96516-29-9]2-fluoro-3-nitrobenzaldehyde</strong>, 324 mg of 3-(N-benzyl-N-methylamino)-2,2-dimethylpropyl acetoacetate and 138 mg of ethyl 3-aminocrotonate in 1 ml of 2-propanol was reacted and then purified in the same way as in Example 8 to yield 120 mg of the desired compound (162). IR (CHCl3) numaxcm-1: 1680, 1348, 1096 NMR (CDCl3) deltappm: 7.8-6.8 (m, 8H), 6.35 (brs, 1H), 5.27 (s, 1H), 4.00 (q, 2H, J=7 Hz), 3.84 (s, sH), 3.39 (s, 2H), 2.25 (s, 8H), 2.03 (s, 3H), 1.18 (t, 3H, J=7 Hz), 0.85 (s, 6H), |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In isopropyl alcohol; | EXAMPLE 3 Synthesis of 2-(N-benzyl-N-methylamino)ethyl methyl 2,6-dimethyl-4-(2-fluoro-3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate (104) A mixture of 330 mg of <strong>[96516-29-9]2-fluoro-3-nitrobenzaldehyde</strong>, 252 mg of methyl 3-aminocrotonate and 506 mg of 2-(N-benzyl-N-methylamino)ethyl acetoacetate in 2 ml of 2-propanol was refluxed for 12 hours, and then the solvent was distilled off in vacuo. The residue was purified by the method of a column chromatography on silica gel to provide 492 mg of the desired compound (104). IR (CHCl3) numaxcm-1: 1692, 1614, 1462 NMR (CDCl3) deltappm: 7.94-7.55 (m, 2H), 7.27 (s, 5H), 7.06 (m, 1H), 5.83 (brs, 1H), 5.31 (s, 1H), 4.13 (t, 2H, J=6 Hz), 3.59 (s, 3H), 3.48 (s, 2H), 2.60 (t, 2H, J=6 Hz), 2.30 (s, 6H), 2.15 (s, 3H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In isopropyl alcohol; | (v) To a solution of 1.70 g of <strong>[96516-29-9]2-fluoro-3-nitrobenzaldehyde</strong> in 10 ml of isopropanol were added 1.15 g of methyl 3-aminocrotonate and 2.10 g of 3-chloro-2,2-dimethylpropyl acetoacetate. The mixture was refluxed for 5 hours. Solvent was distilled off under reduced presoure to leave a residue. The residue was chromatographed on silica gel to give 2.09 g of 3-chloro-2,2-dimethylpropyl methyl 2,6-dimethyl-4-(2-fluoro-3-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To 5-iodo-7H-pyrrolo[2,3-d]pyrimidine (35, 1.911 g, 7.799 mmol) 9.75 mL of tetrahydrofuran was added, the suspension was cooled to -5 C., and o-tolylmagnesium chloride (8.19 mL, 1.00 M in tetrahydrofuran, 8.19 mmol) was added. The reaction solution was stirred and kept between -5 C. and 0 C. for 30 minutes, then isopropylmagnesium chloride (4.29 mL, 2.0 M in tetrahydrofuran, 8.58 mmol) was slowly added dropwise. The reaction mixture was stirred and kept at 0 C. for 30 minutes, then <strong>[96516-29-9]2-fluoro-3-nitro-benzaldehyde</strong> (36, 1.58 g, 9.36 mmol) in 4 mL of tetrahydrofuran was added dropwise using a syringe. The reaction mixture was stirred at -5 C. for 30 minutes and quenched with 1 N hydrochloric acid (1 equivalent) and extracted with ethyl acetate and saturated sodium bicarbonate in water. The organic layer was dried over magnesium sulfate, filtered and the filtrate concentrated under vacuum. The resulting material was purified by silica gel column chromatography eluding with a gradient of 60-80% ethyl acetate in hexanes (with 4% acetic acid). Appropriate fractions were combined and concentrated under vacuum to provide the desired compound (37, 699 mg). MS(ESI) [M+H+]+=289.4. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium chlorite; aminosulfonic acid; water; In 1,4-dioxane; at 20℃; for 0.5h; | In a round bottom flask, <strong>[96516-29-9]2-fluoro-3-nitro-benzaldehyde</strong> (15, 1 .02 g, 6.03 mmol) is combined with sodium chlorite ( 1.26 g, 1 1.15 mmol), 60 mL of 1 ,4-dioxane, 20 mL of water, and sulfamic acid (4.47 g, 46.0 mmol) and the reaction is stirred at room temperature for 30 minutes. The mixture is poured into water and extracted with ethyl acetate. The organic layer is washed with water, then brine, dried over magnesium sulfate, filtered and the filtrate is concentrated under vacuum. The resulting material is purified on column chromatography, eluting with methanol and dichloromethane. Appropriate fractions are combined and concentrated under vacuum, then suspended in dichloromethane. The resulting solid is collected by filtration to provide the desired compound (16, 151 mg). MS (ESI) [M-H+]' = 184.4. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With diethylaminosulfur fluoride; In dichloromethane; at 0 - 20℃; for 4.0h; | To a solution of <strong>[96516-29-9]2-fluoro-3-nitro-benzaldehyde</strong> (2.0 g, 11.8 mmol) in DCM (20 mL) was added diethylaminosulfur fluoride (7.63 g, 47.3 mmol) at 0C and the reaction mixture was stirred at room temperature for 4h. Progress of the reaction was monitored by TLC. After completion, the reaction mixture was poured into ice cold saturated NaHCO3 solution (50 mL) and extracted with DCM (2 * 200 mL). The organic layer was separated, washed with brine (15 mL), dried over anhydrous Na2SO4 and concentrated under vacuum to afford 1-(difluoromethyl)-2-fluoro-3-nitro-benzene XI-5a (2.23 g) as a pale brown liquid. This compound was used as such for the next reaction without further purification. Yield: 96% 1H NMR (400 MHz, DMSO-d6) delta 7.35 (t, J=52 Hz, 1 H), 7.60 (t, J=8.07 Hz, 1 H), 8.05 (t, J=6.85 Hz, 1 H), 8.35 (t, J=7.82 Hz, 1 H). |
87% | With diethylamino-sulfur trifluoride; In dichloromethane; at 0℃; for 1.0h; | To a solution of <strong>[96516-29-9]2-fluoro-3-nitrobenzaldehyde</strong> (6.7 g, 40 mmol) in DCM (100 mL) at 0 C was added a slurry of DAST (16.0 g, 99 mmol) in DCM (50 mL) slowly. The reaction mixture was stirred in an ice-water bath for 1 h and H20 (300 mL) was added. The aqueous phase was extracted with DCM (50 mL x 3) and the combined organic extracts were dried (Na2S04), filtered, and concentrated in vacuo. The crude material was purified by silica-gel column chromatography (petroleum ether/EtOAc, 20:1) to give l-(difluoromethyl)-2-fluoro-3- nitrobenzene as an orange oil (6.6 g, yield: 87%). 1H NMR (400 MHz, CDCl3) d: 8.20 (t, J = 8.0 Hz, 1H), 7.92 (t, / = 6.8 Hz, 1H), 7.44 (t, / = 8.0 Hz, 1H), 6.97 (t, / = 54.4 Hz, 1H). |
With diethylamino-sulfur trifluoride; In dichloromethane; at -78 - 20℃; for 1.0h; | A solution of <strong>[96516-29-9]2-fluoro-3-nitrobenzaldehyde</strong> (564 mg, 3.34 mmol) in DCM (20 mL) was cooled to -78 C. DAST (645 mg, 4.01 mmol) was added dropwise and the mixture was stirred at rt for 1 h. 'The mixture was poured into ice water, extracted with EtOAc (3 x 30 mL) and the combined organic layers were washed with brine and concentrated to dryness. The residue was purified by preparative TLC (PE/EtOAc :=: 5: 1) to give the title compound as a yellow solid. |
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