Structure of 942190-61-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 942190-61-6 |
Formula : | C11H19NO5 |
M.W : | 245.27 |
SMILES Code : | O=C(N1CC(C(OC)=O)(O)CC1)OC(C)(C)C |
MDL No. : | MFCD12400943 |
InChI Key : | ALAIMDFVDAWVMO-UHFFFAOYSA-N |
Pubchem ID : | 42609292 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335-H412 |
Precautionary Statements: | P261-P273-P305+P351+P338 |
Num. heavy atoms | 17 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.82 |
Num. rotatable bonds | 5 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 63.88 |
TPSA ? Topological Polar Surface Area: Calculated from |
76.07 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.53 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.34 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.15 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.22 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.29 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.71 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.24 |
Solubility | 14.0 mg/ml ; 0.0569 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.5 |
Solubility | 7.73 mg/ml ; 0.0315 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.72 |
Solubility | 46.5 mg/ml ; 0.19 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.55 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.01 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | A mixture of compound 2W (5.3 g, 25 mmol), MeOH (50 ml), 4N solution of HCI in dioxane (10 ml) was heated in a sealed tube at 70 0C for overnight. The reaction mixture was concentrated and THF (20 ml) was added followed by CH2CI2 (50 ml), triethylamine (16 ml) and di-tert-butyl dicarbonate (11g). The reaction mixture was stirred at room temperature for overnight and then concentrated. Diluted the residue with ether (200 ml) and washed with water (100 ml). The organic layer was separated, dried over Na2SO4, filtered and concentrated. The residue was purified on silica gel eluting with 1/1 EtOAc/hexane then 2/1 EtOAC/hexane to give the desired product 3W (4.35 g, 71%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
61% | With pyridine; In dichloromethane; at 20℃; for 120h; | To a solution of compound 3W (2.8 g, 11.4 mmol) in CH2CI2 (100 ml) was added 1 ,3-ben2:odithiol-2-yIium tetrafluoroborate (5.4 g, 22.8 mmol) followed by pyridine (0.2 ml). The reaction mixture was stirred at room temperature for five days. Quenched the reaction mixture with triethylamine (9.6 ml) and stirred for 15 minutes. The reaction mixture was washed with water (100 ml), dried over Na2SO4, filtered and <n="443"/>concentrated. The residue was purified on silica gel eluting with 1/4 EtOAc/hexane then 1/2 EtOAC/hexane to give the desired product 4W (2.75 g, 61%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.23 g | With caesium carbonate; In acetonitrile; at 80℃; for 20h; | Step c. To a solution of methyl 1 -(tert-butyl) 3-methyl 3-hydroxypyrrolidine-l,3- dicarboxylate (0.27 g, 1.10 mmol) in MeCN (10 ml) was added Cs2C03 (1.79 g, 5.51 mmol) at rt. The reaction mixture was stirred at rt for 5 min. CI (0.78 g, 5.51 mmol) was added to the reaction mixture at rt. The reaction mixture was heated at 80C for 20 h. The resulting reaction mixture was poured into cold water (15 ml) and extracted with EtOAc (3 x 10 ml). The combined organic phase was collected, dried over Na2SC>4, filtered and concentrated under reduced pressure. The resulting residue was purified by column chromatography (10% EtOAc in hexane) yielding 1 -(tert-butyl) 3-methyl 3-methoxypyrrolidine-l,3-dicarboxylate (0.23 g, 0.88 mmol). LCMS: Method A, 2.13 min, MS: ES+ 260.30. |
To a solution of <strong>[942190-61-6]1-(tert-butyl) 3-methyl 3-hydroxypyrrolidine-1,3-dicarboxylate</strong> (250 mg, 1.02mmol) in DMF (5 mL) was added NaH (81.53 mg, 2.04 mmol) at 0C. The reaction was stirredfor 10 mm, and methyl iodide (434 mg, 3.06 mmol) was added. The resulting mixture was stirred at 28C for 3 h. The mixture was poured into water (20 mL) and extracted with EtOAc (3 x 30 mL). The organic layer was washed with brine (3 x 20 mL), dried over Na2SO4, filtered and concentrated to provide 1 -(tert-butyl) 3-methyl 3-methoxypyrrolidine- 1,3 -dicarboxylate whichwas used without purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydrogencarbonate; In water; ethyl acetate; at 20℃; for 8h; | Step b. To the suspension of methyl 3-hydroxypyrrolidine-3-carboxylate HC1 (0.55 g, 3.03 mmol) in sat. NaHCOs solution (2 ml) and EtOAc (5 ml) was added BOC anhydride (1.32 g, 6.07 mmol) and stirred at rt for 8 h. The resulting reaction mixture was poured into water (15 ml) and extracted with EtOAc (3 x 10 ml). The combined organic phase was collected, dried over Na2S04, filtered and concentrated under reduced pressure yielding l-(tert-butyl) 3- methyl 3-hydroxypyrrolidine-l,3-dicarboxylate (0.29 g, 1.18 mmol). This material was used directly for the next step without further purification. LCMS: Method A, 1.88 min, MS: ES+ 246.30. | |
2.2 g | With sodium hydrogencarbonate; In ethyl acetate; at 20℃; for 16h; | To a stirred solution of methyl 3-hydroxypyrrolidine-3-carboxylate HC1 salt (4.2 g, 23.204 mmol) in EtOAc (42 ml) was added saturated NaHC03solution (42 ml) at rt. Boc anhydride (10.12 g, 46.4 mmol) was added to the reaction mixture at rt. The reaction mixture was stirred at rt for 16 h. The resulting reaction mixture was poured into saturated NaHC03(200 ml) and extracted with EtOAc (2 x 100 ml). The combined organic phase was dried over Na2S0 , filtered and concentrated under reduced pressure. The resulting residue was purified by flash chromatography (30% EtOAc in hexane) yielding 1 -(tert-butyl) 3-methyl 3-hydroxypyrrolidine-l,3-dicarboxylate (2.2 g, 8.979 mmol). LCMS: Method 1, 1.90 min, MS: ES+ 246.2; NMR (400 MHz, DMSO-d6) delta ppm: 5.87 (s, 1 H), 3.68 (s, 3 H), 3.41 - 3.52 (m, 2 H), 3.28 - 3.32 (M, 2 H), 2.09 - 2.18 (m, 1 H), 1.91 - 1.94 (m, 1 H), 1.39 (s, 9 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.65 g | To a stirred solution of 1 -(tert-butyl) 3-methyl 3-hydroxypyrrolidine-l,3-dicarboxylate (Intermediate C; 0.5 g, 2.04 mmol) in THF (30 ml) was added sodium bis(trimethylsilyl)amide solution (1M in THF; 2.04 ml, 2.04 mmol) dropwise at -78C. The reaction mixture was stirred at - 78C for 5 min. A solution of 2-fluoro-3-nitro-5-bromopyridine (CAS Number 886372-98-1; 0.493 g, 2.24 mmol) in THF (1 ml) was added to the reaction mixture at -78C. The reaction mixture was stirred at -78C to -40C for 5 h. The resulting reaction mixture was quenched by slow addition of saturated ammonium chloride solution (20 ml) at -40C. The resulting reaction mixture was warmed to rt and combined with three other batches on the same scale prepared by an identical method. The reaction mixture was diluted with water (50 ml) and extracted with EtOAc (3 x 50 ml). The combined organic phase was separated and washed with brine (30 ml). The organic phase was separated, dried over Na2S04, filtered and concentrated under reduced pressure. The resulting residue was purified by flash chromatography (12% EtOAc in hexane) yielded 1 -(tert-butyl) 3-methyl 3-((5-bromo-3- nitropyridin-2-yl)oxy)pyrrolidine-l,3-dicarboxylate (1.65 g, 3.697 mmol). LCMS: Method 1, 2.539 min, MS: ES+ 390.2, 392.2 (M-2) (M-56); 1HNMR (400 MHz, DMSO-d6) delta ppm: 8.78 (s, 1 H), 8.63 (s, 1 H), 4.00 (d, J=12.0 Hz, 1 H), 3.70 (d, J=12.8 Hz, 1 H), 3.65 (s, 3 H), 3.48 - 3.54 (m, 1 H), 3.37 - 3.46 (m, 1 H), 2.39 - 2.45 (m, 2 H), 1.39 (d, J=6.4 Hz, 9 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.13 g | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 16h; | To a solution of l-(tert-butyl) 3-methyl 3-hydroxypyrrolidine-l,3-dicarboxylate (Intermediate C, 0.7 g, 2.857 mmol) in DMF (10 ml) were added K2C03(1.18 g, 8.571 mmol) and 2-nitrobenzyl bromide (CAS Number 3958-60-9; 0.74 g, 3.428 mmol) at rt. The reaction mixture was stirred at rt for 16 h then poured into water (150 ml) and extracted with EtOAc (3 x 100 ml). The combined organic phase was separated, dried over Na2S04, filtered and concentrated under reduced pressure. The resulting residue was purified by flash chromatography (neutral aluminium oxide, 5% EtOAc in hexane) yielding l-(tert-butyl) 3-methyl 3-((2-nitrobenzyl)oxy)pyrrolidine-l,3- dicarboxylate (0.13 g, 0.342 mmol). LCMS: Method 1, 2.557 min, MS: ES+ 325.5 (M-56); 1H NMR (400 MHz, DMSO-d6) delta ppm: 8.04 (d, J=8.0 Hz, 1 H), 7.76 (d, J=4.0 Hz, 2 H), 7.57 - 7.60 (m, 1 H), 4.78 - 4.91 (m, 2 H), 3.71 (s, 3 H), 3.58 - 3.61 (m, 2 H), 3.41 - 3.48 (m, 1 H), 3.33 - 3.35 (m, 1 H), 2.26 - 2.28 (m, 2 H), 1.38 (d, J=13.6 Hz, 9 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
0.12 g | With caesium carbonate; In N,N-dimethyl-formamide; at 60℃; for 16h; | To a stirred solution of 2-chloro-3-nitropyridine (CAS Number 5470-18-8; 0.5 g, 3.154 mmol) in DMF (10 ml) was added l-(tert-butyl) 3-methyl 3-hydroxypyrrolidine-l,3-dicarboxylate (Intermediate C; 0.62 g, 2.524 mmol) and Cs2C03(3.08 g, 9.463 mmol) at rt. The reaction mixture was stirred at 60C for 16 h. The resulting reaction mixture was poured into ice cold water (100 ml) and extracted with EtOAc (2 x 70 ml). The combined organic phase was dried over Na2S04, filtered and concentrated under reduced pressure. The resulting residue was purified by flash chromatography using neutral alumina (25% EtOAc in hexane) yielding l-(tert-butyl) 3-methyl 3-((3-nitropyridin-2- yl)oxy)pyrrolidine-l,3-dicarboxylate (0.12 g, 0.327 mmol). LCMS: Method 1, 2.20 min, MS: ES+ 368.5; 1H NMR (400 MHz, DMSO-d6) delta ppm: 8.51 (d, J=8.0 Hz, 1 H), 8.44 (dd, J=1.6 Hz, 4.8 Hz, 1 H), 7.30 -7.34 (m, 1 H), 3.97 - 4.04 (m, 1 H), 3.68 - 3.71 (m, 1 H), 3.63 (s, 3 H), 3.44 - 3.48 (m, 2 H), 2.41 - 2.45 (m, 2 H), 1.38 (s, 9 H). |