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Structure of 908240-50-6

Chemical Structure| 908240-50-6

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Product Details of [ 908240-50-6 ]

CAS No. :908240-50-6
Formula : C7H3Cl2N3
M.W : 200.02
SMILES Code : ClC1=NC2=C(C=CN=C2)C(Cl)=N1
MDL No. :MFCD10699461
InChI Key :YJUVYWACDUJBDG-UHFFFAOYSA-N
Pubchem ID :45789969

Safety of [ 908240-50-6 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H332-H335
Precautionary Statements:P261-P280-P305+P351+P338

Computational Chemistry of [ 908240-50-6 ] Show Less

Physicochemical Properties

Num. heavy atoms 12
Num. arom. heavy atoms 10
Fraction Csp3 0.0
Num. rotatable bonds 0
Num. H-bond acceptors 3.0
Num. H-bond donors 0.0
Molar Refractivity 47.35
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

38.67 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.9
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

2.39
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.33
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

1.25
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.73
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.12

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.2
Solubility 0.125 mg/ml ; 0.000627 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.84
Solubility 0.287 mg/ml ; 0.00143 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-4.19
Solubility 0.0128 mg/ml ; 0.0000641 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Moderately soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-5.82 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.68

Application In Synthesis of [ 908240-50-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 908240-50-6 ]

[ 908240-50-6 ] Synthesis Path-Downstream   1~35

  • 2
  • [ 110-91-8 ]
  • [ 908240-50-6 ]
  • C11H11ClN4O [ No CAS ]
  • 3
  • C7H4N3O2(1-)*K(1+) [ No CAS ]
  • [ 908240-50-6 ]
  • 4
  • [ 908240-50-6 ]
  • [ 98-80-6 ]
  • [ 1262866-86-3 ]
YieldReaction ConditionsOperation in experiment
67% With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 120℃; for 3h; After 2,4-dichloropyrido[3,4-d]pyrimidin (5 g, 24.9 mmol), phenylboronic acid (3.6 g, 29.9 mmol), Pd(PPh3)4 (1/15 g, 0.996 mmol), sodium carbonate aqueous solution (87 mL) , and ethanol (87 mL) were dissolved in toluene (180 mL), the mixture was stirred under reflux at 120 C for 3 hours. When the reaction was completed, an organic layer was extracted with ethyl acetate and remaining moisture was removed by using magnesium sulfate. Drying followed by column separation yielded Compound B-I (4 g, 16.5 mmol, 67 percent)
  • 5
  • [ 908240-50-6 ]
  • [ 98-80-6 ]
  • [ 1262866-87-4 ]
  • 6
  • [ 3731-53-1 ]
  • [ 908240-50-6 ]
  • [ 1352995-30-2 ]
YieldReaction ConditionsOperation in experiment
63% With triethylamine; In N,N-dimethyl-formamide; at 20℃;Inert atmosphere; 2-Chloro-N-(pyridin-4-ylmethyl)pyrido[3,4-d]pyrimidin-4-amine (B-3)To a solution of B-2 (500 mg, 2.50 mmol) in 12.5 mL of anhydrous DMF at RT under N2 was added 4-(aminomethyl)pyridine (0.278 mL, 2.75 mmol) followed by triethylamine (523 muL, 3.75 mmol). After stirring for several hours, the mixture was diluted with sat. aqueous NaHCO3 solution and extracted several times with EtOAc. The organic layers were combined and washed with sat. aqueous NaHCO3 solution, water, then brine, then dried with Na2SO4 and concentrated. The aqueous layers were combined and reextracted several times with 4:1 CHCl3-isopropanol; the organic layers were combined with the EtOAc extraction and concentrated. The residue was adsorbed onto silica gel and then purified by gradient elution on silica gel (0 to 100percent (25percent 20:1:1 EtOH:NH4OH:H2O-75percent EtOAc) in hexanes) to yield 426 mg (63percent) of B-3 as a dark brown solid. Data for B-3: 1HNMR (500 MHz, DMSO-d6) delta 9.71 (m, 1H), 9.05 (s, 1H), 8.68 (d, 1H), 8.52 (d, 2H), 8.20 (d, 1H), 7.37 (d, 2H), 4.80 (d, 2H) ppm. HRMS (ES) calculated M+H for C13H11ClN5: 272.0698. Found: 272.0696.
  • 7
  • 2-thioxo-2,3-dihydropyrido[3,4-d]-pyrimidin-4(1H)-one [ No CAS ]
  • [ 908240-50-6 ]
YieldReaction ConditionsOperation in experiment
27% 2,4-Dichloropyrido[3,4-d]pyrimidine (B-2)To a suspension of B-1 (500 mg, 2.8 mmol) in 6.5 mL (70 mmol) POCl3 was added DMF (32 muL, 0.4 mmol) and the mixture was heated in the microwave at 130° C. for 10 minutes. The reaction was transferred to a 250 mL round bottom flask with the help of DCM, and the volatiles were removed by rotary evaporation. The residue was suspended in 75 mL DCM and to this was carefully added 75 mL of 5percent aqueous Na2CO3 (pH>10 after addition). The layers were separated with the help of additional DCM, the organic was washed with water, dried over Na2SO4, and concentrated to provide 367 mg of a brown solid. This material was dissolved in DCM, dry loaded onto silica gel, and purified by column chromatography (0 to 100percent EtOAc in hexanes) to provide 148 mg (27percent) of B-2 as a white solid. Data for B-2: 1HNMR (500 MHz, CDCl3) delta 12.9 (s, 1H), 12.7 (s, 1H), 8.7 (s, 1H), 8.5 (d, 1H), 7.75 (d, 1H) ppm.
  • 8
  • [ 21038-67-5 ]
  • [ 908240-50-6 ]
YieldReaction ConditionsOperation in experiment
82% With N-ethyl-N,N-diisopropylamine; trichlorophosphate; In toluene; at 25℃; for 18h; To a mixture of pyrido[3,4-d]pyrimidine-2,4(1 H,3H)-dione (2b, 20.00 g, 122.60 mmol) and POCI3 (328.03 g, 2.14 mol) in toluene (200 mL) was added DIEA (31 .69 g, 245.20 mmol) dropwise and this reaction mixture stirred at 25°C overnight (18hr) to give suspension. The solvent and POCI3 was removed under vacuum, diluted with DCM (50 mL), neutralized with DIEA to pH=7 at -20°C and concentrated again, the residue was purified by column (20-50percent EA/PE) to give the product (2c, 20.00g, 99.99 mmol, 82percent yield) as a yellow solid. 1 H NMR (400 MHz, CHLOROFORM-d) delta 9.52 (s, 1 H), 8.92 (d, J=5.6 Hz, 1 H), 8.04 (d, J=5.6 Hz, 1 H). LCMS (m/z [M+H]+): 200.0.
41% With N-ethyl-N,N-diisopropylamine; trichlorophosphate; In toluene;Reflux; To a mixture of pyrido[3,4-d]pyridine-2,4(1H,3H)-dione (2.0 g, 12.3 mmol) in toluene (50 mL) was added DIEA (3.15 g, 25 mmol) and POC13 (9.5 g, 61.4 mmol). The reaction mixture was refluxed overnight. The solution was concentrated in vacuo and the residue was taken in ethyl acetate, washed with aq. NaHCO3 and brine. The organics were dried and concentrated. The residue was purified by silica gel chromatography (25percent EA:PE)to give 1.0 g (41percent) of the title compound. ?H NMR (400 MHz, DMSO-d6): oe 9.50 (s, 1H), 8.90 (d, 1H, J 5.2 Hz), 8.02 (d, 1H, J 5.2 Hz).
41% With N-ethyl-N,N-diisopropylamine; trichlorophosphate; In toluene;Reflux; [00156j To a mixture of pyrido[3,4-d]pyridine-2,4(1H,3H)-dione (2 g, 12.3 mmol) in toluene (50 mL) was added DIEA (3.15 g, 25 mmol) and POC13 (9.5 g, 61.4 mmol). The reaction mixture was refluxed overnight. The solution was concentrated in vacuo and the residue was taken in ethyl acetate and washed with aq. NaHCO3 and brine. The organics were dried and concentrated. The residue was purified by silica gel chromatography (25percent EA:PE) to afford lg (4 1percent) of the title compound. ?H NMR (400 MHz, DMSO-d6): oe 9.50 (s, 1H), 8.90 (d, 1H, J 5.2Hz), 8.02 (d, 1H, J 5.2Hz).
  • 9
  • [ 64188-97-2 ]
  • [ 908240-50-6 ]
  • 10
  • [ 908240-50-6 ]
  • 2-propan-2-yloxy-3H-pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 11
  • [ 908240-50-6 ]
  • 2-ethoxypyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 12
  • [ 908240-50-6 ]
  • 2-(2-hydroxyethoxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 13
  • [ 908240-50-6 ]
  • 2-phenylmethoxypyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 14
  • [ 908240-50-6 ]
  • 2-({1-[(1R)-1-phenylethyl]-1H-pyrazol-4-yl}oxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 15
  • [ 908240-50-6 ]
  • 2-methoxypyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 16
  • [ 908240-50-6 ]
  • 2-(2-phenoxyethoxy)-3H-pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 17
  • [ 908240-50-6 ]
  • 2-[(2,6-dichlorophenyl)methoxy]pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 18
  • [ 908240-50-6 ]
  • 2-[2-(4-chlorophenyl)ethoxy]pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 19
  • [ 908240-50-6 ]
  • 2-(naphthalen-1-ylmethoxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 20
  • [ 908240-50-6 ]
  • 2-(3,4-dihydro-2H-1-benzopyran-4-yloxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 21
  • [ 908240-50-6 ]
  • 2-[3-(dimethylamino)propoxy]pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 22
  • [ 908240-50-6 ]
  • 2-phenoxypyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 23
  • [ 908240-50-6 ]
  • 2-(3-ethylphenoxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 24
  • [ 908240-50-6 ]
  • 2-(3-propylphenoxy)pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 25
  • [ 908240-50-6 ]
  • 2-chloropyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
YieldReaction ConditionsOperation in experiment
88% With water; sodium hydroxide; In tetrahydrofuran; for 2h;Reflux; To a solution of <strong>[908240-50-6]2,4-dichloropyrido[3,4-d]pyrimidine</strong> (1 g, 5 mmol) in THF (20 mL) was added a solution of NaOH (0.5 g, 12.5 mmol) in water (20 mL). The reaction mixture was stirred at rt for 2 h. The solution was adjusted to pH=2 using 5N HC1 and the resulting precipitate was filtered and washed with water and THF, and dried to give 0.8g (88percent) of the title compound. ?H NMR (400 MHz, DMSO-d6): oe 13.61 (s, 1H), 8.99 (s, 1H), 8.69 (d, 1H, J 5.2 Hz), 7.94 (d, 1H, J 5.2 Hz).
88% With sodium hydroxide; In tetrahydrofuran; water; at 20℃; for 2h; [00157j To a solution of <strong>[908240-50-6]2,4-dichloropyrido[3,4-d]pyrimidine</strong> (1 g, 5 mmol) in THF (20 mL) was added a solution of NaOH (0.5 g, 12.5 mmol) in water (20 mL). The reaction mixture was stirred at r.t. for 2 h. The solution was adjusted to pH=2 using SN HC1 and the resulting precipitate was filtered and washed with water and THF, and dried to afford 0.8g (88percent) of the title compound.?H NMR (400 MHz, DMSO-d6): oe 13.61 (s, 1H), 8.99 (s, 1H), 8.69 (d, 1H, J 5.2 Hz), 7.94 (d, 1H, J 5.2 Hz).
  • 26
  • [ 908240-50-6 ]
  • 2-[4-(methyl-pyridin-2-yl-amino)-phenoxy]-pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 27
  • [ 908240-50-6 ]
  • 2-(4-{methyl-[3-(4-methyl-piperazin-1-yl)-phenyl]-amino}-phenoxy)-pyrido[3,4-d]pyrimidin-4-ol [ No CAS ]
  • 28
  • [ 908240-50-6 ]
  • 2-(3-(4-((4-(1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)-N-isopropylacetamide [ No CAS ]
  • 29
  • [ 908240-50-6 ]
  • 2-(3-(4-((4-(1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)-N-cyclobutylacetamide [ No CAS ]
  • 30
  • [ 908240-50-6 ]
  • 2-(3-(4-((4-(1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)-N-cyclopentylacetamide [ No CAS ]
  • 31
  • [ 908240-50-6 ]
  • 2-(3-(4-((4-(1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)-N-(tert-butyl)acetamide dihydrochloride [ No CAS ]
  • 32
  • [ 908240-50-6 ]
  • N-(tert-butyl)-2-(3-(4-((4-(1-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)acetamide [ No CAS ]
  • 33
  • [ 908240-50-6 ]
  • 2-(3-(4-((4-(1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)-N-(tert-pentyl)acetamide [ No CAS ]
  • 34
  • [ 908240-50-6 ]
  • N-(tert-pentyl)-2-(3-(4-((4-(1-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl)phenyl)amino)pyrido[3,4-d]pyrimidin-2-yl)phenoxy)acetamide [ No CAS ]
  • 35
  • [ 908240-50-6 ]
  • 4-(1-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl)aniline [ No CAS ]
  • 2-chloro-N-(4-(1-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl)phenyl)pyrido[3,4-d] pyrimidin-4-amine [ No CAS ]
YieldReaction ConditionsOperation in experiment
72% With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; at 15℃; for 16h;Inert atmosphere; To the mixture of <strong>[908240-50-6]2,4-dichloropyrido[3,4-d]pyrimidine</strong> (420.00 mg, 2.10 mmol) and 4-(l-(tetrahydro-2H-pyran-2-yl)-lH-pyrazol-4-yl)aniline (408.70 mg, 1.68 mmol) in THF (10.00 mL) was added DIPEA (542.75 mg, 4.20 mmol, 733.45 uL). The mixture was stirred under N2 at 15 °C for 16 h. TLC (petroleum:EtOAc=0: l, Rf=0.40) showed one new main spot. The reaction mixture was diluted with water (30 mL) and the mixture was extracted with EtOAc (40 mLx3). The combined organic layers were washed dried over Na2S04, filtered and concentrated under reduced pressure to give a residue. The residue was purified by recrystallization (petroleum:EtOAc=10: l, 20 mL) to afford the title compound (620.00 mg, 72percent) as a yellow solid. 1H NMR (400 MHz, DMSO-i/6) delta 10.51 (s, 1H), 9.10 (s, 1H), 8.74 (d, J= 6.0 Hz, 1H), 8.45 (d, J= 5.6 Hz, 1H), 8.37 (s, 1H), 7.98 (s, 1H), 7.81 (d, J= 8.4 Hz, 2H), 7.71 (d, J = 8.8 Hz, 2H), 5.43-5.41 (m, 1H), 3.97-3.94 (m, 1H), 3.69-3.62 (m, 1H), 2.15-2.12 (m, 1H), 1.99- 1.94 (m, 2H), 1.72-1.65 (m, 1H), 1.57-1.56 (m, 2H).
 

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