Structure of 887591-62-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 887591-62-0 |
Formula : | C10H17NO4 |
M.W : | 215.25 |
SMILES Code : | O=C(C1(C)CN(C(OC(C)(C)C)=O)C1)O |
MDL No. : | MFCD12406581 |
InChI Key : | FNWBDXQPGAIDQH-UHFFFAOYSA-N |
Pubchem ID : | 53234194 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 15 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 58.1 |
TPSA ? Topological Polar Surface Area: Calculated from |
66.84 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.87 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.78 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.95 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.74 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.43 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.95 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.4 |
Solubility | 8.53 mg/ml ; 0.0396 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.76 |
Solubility | 3.7 mg/ml ; 0.0172 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.7 |
Solubility | 42.7 mg/ml ; 0.198 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.06 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.22 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | In methanol; | (a) 1-tert-Butyl 3-methyI azetidine-l,3-dicarboxylate; 1-(ter^Butoxycarbonyl)azetidine-3-carboxylic acid (2.42 g, 12.0 mmol) was dissolved in MeOH (30 mL) and TM5CHN2 (30.1 ml, 60.1 mmol) was added drop- wise at room temperature (reaction became warm and gas was evolved). TM5CHN2 was added until a persistent yellow color was produced indicating excess reagent. AcOH was added drop- wise to quench the excess TM5CHN2 and then the reaction mixture was concentrated under reduced pressure and azeotroped with toluene (3 x 20 mL) to remove any trace MeOH and AcOH. The crude material was used without any further purification assuming 100 percent yield. 1H NMR (400 MHz, CDCl3): 6 1.44 (9H, s), 3.29-3.39 (1H, m), 3.75 (3H, s), 4.07-4.13 (4H, m). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In diethyl ether; dichloromethane; at 0℃; | Step 1 : A solution of 1 -BOC-3-methylazetidine-3-carboxylic acid (ACPharmtech) (185 mg, 0.859 mmol) in DCM (5 mL) at 0 °C is treated with diazomethane etheral solution (as prepared in example 2D, step 2) until gas evolution ceases and the reaction solution remains yellowish. The volatiles are removed under reduced pressure to afford intermediate 8014A. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; triethylamine; In dichloromethane; ethyl acetate; at 20℃; for 1.0h; | To a stirring solution of intermediate 40 (168 mg, 0.37 mmol) and SM 1(80 mg, 0.37 mmol) in DCM (20 mL) was added Et3N (75 mg, 0.8 mmol) followed by T3P (50percent in EtOAc) (470 mg, 0.8 mmol) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted with DCM. Combined organic extracts were dried over anhydrous Na2504 and concentrated underreduced pressure to obtain crude product, which was purified by silica gel column chromatography eluting with 5percent MeOH in DCM to afford compound 1 (100 mg, 41 percent) as a light yellow solid. LCMS: m/z = 549.3 [M+H-Boc] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; triethylamine; In dichloromethane; ethyl acetate; at 20℃; for 1.0h; | To a stirring solution of intermediate 42 (50 mg, 0.1 mmol) and 1-(tert-butoxycarbonyl)-3- methylazetidine-3-carboxylic acid SM 1 (43 mg, 0.2 mmol) in DCM (10 mL) was added Et3N (30mg, 0.3 mmol) followed by T3P (50percent in EtOAc) (190 mg, 0.3 mmol) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted with DCM. Combined organic extracts were dried over anhydrous Na2504 and concentrated under reduced pressure to obtain cmde product, which was purified by silica gel column chromatography eluting with 5percent MeOH in DCM to afford compound 1 (50 mg, 73 percent) as a light yellow solid. LC-MS: m/z = 577.2 [M+H-Boc] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80 mg | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; triethylamine; In dichloromethane; ethyl acetate; at 20℃; for 1.0h; | To a stirring solution of intermediate 18 (87 mg, 0.2 mmol) and 1-(tert-butoxycarbonyl)-3- methylazetidine-3-carboxylic acid SM 1 (43 mg, 0.2 mmol) in DCM (10 mL) was added Et3N (40 mg, 0.4 mmol) followed by T3P (50percent in EtOAc) (254 mg, 0.4 mmol) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted with DCM. Combined organic extracts weredried over anhydrous Na2504 and concentrated under reduced pressure to obtain crude product,which was purified by silica gel column chromatography eluting with 5percent MeOH in DCM to afford compound 1(80mg, 63percent) as alight yellow solid. LC-MS: m/z = 631.2 [M+H] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonium acetate; N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl acetamide; at 20℃; for 16.0h; | The BB-25-1 (0.1g, 0.46mmol) and ammonium acetate (0.035g, 0.046mmol) was dissolved in nitrogen, the nitrogen compound - twodimethylformamide (2mL), followed by addition of 2- (7-azo-benzo triazole) - N, N, N ', N' - tetramethyluronium hexafluorophosphate(0.265g, 0.697mmol) and N, N - diisopropylethylamine (0.18g, 1.39mmol), the reaction It was stirred for 16 hours at room temperaturewhen.After completion of the reaction was added ethyl acetate, the organic phase was washed with saturated aqueous sodium bicarbonate and brine, dried over anhydrous sodium sulfatedrying, filtration, solvent was removed under reduced pressure to give the title compound BB-25-2 (white solid, 0.05 g of, crude), crude without puretechnology used in the next reaction |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In methanol; water; for 4.0h;Reflux; | [Note: Since cyanoazetidine 26 is volatile, acombined procedure designed to maximize the yield is provided here. However, if azetidine 26 is already inhand, follow just the NaOH hydrolysis step.] To a solution of tert-butyl 3-cyanoazetidine-1-carboxylate (22)(150 mg, 0.823 mmol, 1 equiv.) in dry THF (3 mL) was added LiHMDS (1M in THF, 0.905 mL, 0.905 mmol, 1.1equiv.) at ?78 oC and stirred for 30 min. at the same temperature. Methyl iodide (77 muL, 1.23 mmol, 1.5 equiv.)was added via syringe and stirred at ?78 oC for 45 min. followed by stirring at rt for 1 h. The resulting mixturewas quenched with NH4Cl (2 mL) and extracted with ethyl acetate (3 x 2 mL). The combined organic extractswere washed with brine (3 mL), dried over Na2SO4, and concentrated. Compound 26 was used in the next stepwithout further purification. A solution of NaOH (115 mg, 4.12 mmol, 5 equiv.) in H2O (3 mL) was slowly addedto a solution of tert-butyl 3-cyano-3-methylazetidine-1-carboxylate (26) in MeOH (3 mL) and then refluxeduntil judged complete by TLC (ca. 4 h). The reaction mixture was cooled to rt and the MeOH was removed in vacuo. The mixture was neutralized with 10 percent aq. citric acid (3 mL) and extracted with CH2Cl2 (3 x 10 mL). Thecombined organic layers were washed with brine (50 mL), dried over Na2SO4, and concentrated to give thedesired product 27 (107.5 mg, 61percent for 2 steps). Physical State: white crystalline solid (mp 135?136 oC); 1HNMR (500 MHz, CDCl3): [mixture of rotamers] delta 6.71 (br s, 1H, COOH minor rotamer), 5.91 (br s, 1H, COOHmajor rotamer), 4.25 (d, J 8.5 Hz, 2H, major), 4.19 (d, J 8.4 Hz, 2H, minor), 3.69 (d, J 8.5 Hz, 2H, minor), 3.68 (d,J 8.6 Hz, 2H, major), 1.55 (s, 3H), 1.44 (s, 9H); 13C NMR (126 MHz, CDCl3): [mixture of rotamers] delta 179.3(major), 178.5 (minor), 156.6 (minor), 156.5 (major), 80.3 (minor), 80.1 (major), 58.5 (br, major + minor, 2 x2C), 39.1 (minor), 38.7 (major), 28.5 (major, 3C), 28.5 (minor, 3C), 23.1 (minor), 22.6 (major); HRMS (ESI-TOF):calc?d for C10H16NO4 [M-H] 214.1079; found 214.1080. |
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