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Chemical Structure| 85953-29-3 Chemical Structure| 85953-29-3

Structure of 85953-29-3

Chemical Structure| 85953-29-3

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Product Details of [ 85953-29-3 ]

CAS No. :85953-29-3
Formula : C8H6ClFO2
M.W : 188.58
SMILES Code : C1=C(C(=CC(=C1)F)Cl)C(OC)=O
MDL No. :MFCD00173937
Boiling Point : No data available
InChI Key :YZDLPZNWBRBZMZ-UHFFFAOYSA-N
Pubchem ID :2763551

Safety of [ 85953-29-3 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H319
Precautionary Statements:P305+P351+P338

Computational Chemistry of [ 85953-29-3 ] Show Less

Physicochemical Properties

Num. heavy atoms 12
Num. arom. heavy atoms 6
Fraction Csp3 0.12
Num. rotatable bonds 2
Num. H-bond acceptors 3.0
Num. H-bond donors 0.0
Molar Refractivity 42.69
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

26.3 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.2
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

3.53
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

2.69
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

2.94
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

2.75
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.82

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-3.47
Solubility 0.0637 mg/ml ; 0.000338 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-3.77
Solubility 0.0323 mg/ml ; 0.000171 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-3.37
Solubility 0.0803 mg/ml ; 0.000426 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-4.94 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<2.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.62

Application In Synthesis of [ 85953-29-3 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 85953-29-3 ]

[ 85953-29-3 ] Synthesis Path-Downstream   1~35

  • 2
  • [ 544-92-3 ]
  • [ 85953-29-3 ]
  • [ 127510-96-7 ]
  • 6
  • [ 110-91-8 ]
  • [ 85953-29-3 ]
  • [ 175153-39-6 ]
YieldReaction ConditionsOperation in experiment
65% With potassium carbonate; In 1-methyl-pyrrolidin-2-one; at 120℃; for 5.0h; A mixture of <strong>[85953-29-3]2-chloro-4-fluoro-benzoic acid methyl ester</strong> (3.51 g, 18.6 mmol), morpholine (1.95 mL, 22.3 mmol) and potassium carbonate (5.12 g, 37.1 mmol) in N-methylpyrrolidinone (20 mL) was stirred at 120C for 5h. The reaction was cooled, diluted with ethyl acetate and filtered through Celite. The filtrate was washed four times with water, once with brine, was dried (sodium sulfate) and evaporated. Purification by flash chromatography (SiO2) eluted with 2:8 ethyl acetate : hexanes to provid 2-chloro-4-morpholin-4-yl-benzoic acid methyl ester (3.08 g, 65% yield) as a white solid. . 1H-NMR (CDCl3, 500 MHz) 7.79 (d, 1H), 6.81 (d, 1H), 6.67 (dd, 1H), 3.81 (s, 3H), 3.78 (m, 4H), 3.20 (m, 4H) ppm; MS (FIA) 256.1 (M+H); HPLC (Method A) 3.275 min.
With potassium carbonate; In 1-methyl-pyrrolidin-2-one; at 120℃; General procedure: The arylfluoride substrate (26-A) (1 eq.) was diluted in NMP (1 ml.,/ 1.32 mmol). Cyclic amine (1.1 eq.) and potassium carbonate (2 eq.) were added and the mixture was stirred at 120 C overnight. The reaction mixture was allowed to cool to room temperature and was diluted with water. The crude mixture was extracted with ethyl acetate (x3) and the combined organics were washed with water (x2). Organics were dried over magnesium sulfate, filtered and concentrated to dryness. The product was purified by silica gel chromatography (0-50% ethyl acetate in hexanes). (2-Chloro-4-mophiholinophenyl)(4-(((3R,6S)-6-(hydroxymethyl)tetrahydro-2H- pyran-3-yl)amino)-7H-pyrrolo[2,3-^pyrimidin-5~yl)methanone was synthesized according to General Scheme 9, using ((2S,5R)-5-aminotetrahydro-2H-pyran-2-yl)methanol. lH NMR (DMSG~i 400 mHz): delta 12.61 (s, 3 I I ): 8.65 (d; J = 6.98 Hz, 1 1 1 ): 8.23 (s; 1 I I ): 7.50 (s; 1 H); 7,43 (d; J - 8,54 Hz; 1 I I ). 7.07 (s; 1 H); 6,96 id; J - 8,68 Hz, 1 H); 4.65 (t; J = 5.29 Hz; 1 Ft), 4.10-4.15 Cm; 2 H); 3.73-3.75 (m; 4 H); 3.38-3.43 (m; 3 H); 3.26-3.27 (m; 4 H); 3.11 (t; J = 1 .29 H/; 1 H); 2.15-2.20 (m; 1 H); 1 .76-1 .79 (m; 1 FI), 1 ,49-1 ,60 (m; 1 H); 1.33-1.43 (m; 1 H). LCMS | Mu Pi Gamma : 472.
  • 8
  • [ 1453-58-3 ]
  • [ 85953-29-3 ]
  • 2-chloro-4-(5-methylpyrazol-1-yl)benzoic acid methyl ester [ No CAS ]
  • [ 220462-02-2 ]
YieldReaction ConditionsOperation in experiment
7.5%; 56% With potassium hydride; In DMF (N,N-dimethyl-formamide); at 130℃; Under anhydrous conditions a stirred suspension of hexane washed potassium hydride (0.424 g, 10.6 mmol) in 5 mL of dimethylformamide was treated in one portion with 3-methyl pyrazole (0.85 mL, 10.6 mmol). After the gas evolution ceased, <strong>[85953-29-3]2-chloro-4-fluorobenzoic acid methyl ester</strong> (2.0 g, 10.6 mmol) was added to the clear solution. The mixture was heated at 130C for 15 minutes, cooled, and partitioned between ethyl acetate and brine. The organic layer was washed with water and brine, and dried over sodium sulfate. Removal of solvent afforded 2.2 g of a yellow oil consisting of a mixture of 3-methyl and 5-methylpyrazole regioisomers. In addition, about 20% of the acid derived from hydrolysis of the ester was detected by analysis of the NMR spectrum of the crude product. The desired 3-methylpyrazole regioisomer was separated from the 5-methyl isomer of Example 22 by flash chromatography (on silica Merck-60, dichloromethane-hexane 2:1) and was isolated as a white solid (1.55 g, 56%). NMR (DMSO-d6, 400 MHz): delta 2.264 (s, 3H, CCH3), 3.845 (s, 3H, OCH3), 6.40 (d, 1H), 7.865 (dd, 1H), 7.93 (d, 1H), 8.00 (s, 1H), 8.535 (d, 1H). MS (EI, m/z): 250/252 [M]+, 219; The title compound was prepared as described in Example 21, Step A and separated from the 3-methylpyrazole isomer of Example 21 by flash chromatography (on silica Merck-60, eluant: dichloromethane). It was obtained as a white solid (0.20 g, 7.5 %). NMR (DMSO-d6, 400 Mhz): delta 2.425 (s, 3H, CCH3), 3.875 (s, 3H, OCH3), 6.33 (s, 1H), 7.65 (m, 2H), 7.79 (s, 1H), 7.95 (d, 1H). MS (EI, m/z): 250/252 [M]+, 219
REFERENCE EXAMPLE 96 2-Chloro-4-(3-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester and 2-chloro-4-(5-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester A suspension of hexane washed potassium hydride (0.424 g) in dimethylformamide (5 ml) was treated in one portion with 3-methyl pyrazole (0.85 ml) while stirring.. After the gas evolution ceased, <strong>[85953-29-3]2-chloro-4-fluorobenzoic acid methyl ester</strong> (2.0 g, 10.6) was added to the clear solution and heated at 130C for 15 minutes.. The reaction mixture was cooled to room temperature and partitioned between ethyl acetate and brine.. The organic phase was washed with water, brine, and dried over anhydrous sodium sulfate.. Removal of solvent in vacuo afforded 2.2 g of a yellow oil. (Note: 20% hydrolysis of the ester was detected by analysis of the NMR spectrum of the crude product).. The desired regioisomer 2-chloro-4-(3-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester was isolated from the other isomer (described below) by flash column chromatography on silica gel (Merck 60) eluding with dichloromethane-hexane 2:1) to give 1.55 g of the title compound as a colorless solid. MS (EI m/z: 250/252 (M)+. The 5-regioisomer, namely 2-chloro-4-(5-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester was isolated from the above flash column chromatography on silica gel (Merck 60) by further eluding with dichloromethane-hexane 2:1 to give 0.20 g of the product as a colorless solid. MS (EI), m/z: 250/252 (M)+.
A suspension of hexane washed potassium hydride (0.424 g) in dimethylformamide (5 ml) was treated in one portion with 3-methyl pyrazole (0.85 ml) while stirring. After the gas evolution ceased, <strong>[85953-29-3]2-chloro-4-fluorobenzoic acid methyl ester</strong> (2.0 g, 10.6) was added to the clear solution and heated at 130 C. for 15 minutes. The reaction mixture was cooled to room temperature and partitioned between ethyl acetate and brine. The organic phase was washed with water, brine,. and dried over anhydrous sodium sulfate. Removal of solvent in vacuo afforded 2.2 g of a yellow oil. (Note: 20% hydrolysis of the ester was detected by analysis of the NMR spectrum of the crude product). The desired regioisomer 2-chloro-4-(3-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester was isolated from the other isomer (described below) by flash column chromatography on silica gel (Merck 60) eluting with dichloromethane-hexane 2:1) to give 1.55 g of the title compound as a colorless solid. MS (EI m/z: 250/252 (M)+. [00283] The 5-regioisomer, namely 2-chloro-4-(5-methyl-1H-pyrazol-1-yl)-benzoic acid methyl ester was isolated from the above flash column chromatography on silica gel (Merck 60) by further eluting with dichloromethane-hexane 2:1 to give 0.20 g of the product as a colorless solid. MS (EI), m/z: 250/252 (M)+.
  • 9
  • [ 85953-29-3 ]
  • [ 208186-84-9 ]
  • 10
  • [ 110-85-0 ]
  • [ 85953-29-3 ]
  • [ 234082-19-0 ]
YieldReaction ConditionsOperation in experiment
With dimethyl sulfoxide; In water; ethyl acetate; Intermediate 34: Methyl 2-chloro-4-(piperazin-1-yl)-benzoate Dimethyl sulfoxide (15 ml) was added to 4.5 g of piperazine to prepare a suspension, and 3.3 g of <strong>[85953-29-3]methyl 2-chloro-4-fluorobenzoate</strong> was added to the suspension. The mixture was stirred at 80 C. for one hr. The temperature of the system was then returned to room temperature. Ethyl acetate (1,000 ml) and 500 ml of water were added thereto. The organic layer was separated, dried over anhydrous magnesium sulfate, and concentrated under the reduced pressure to prepare 3.7 g of the title compound. Physicochemical Properties of Intermediate 34
  • 12
  • [ 506-59-2 ]
  • [ 67-68-5 ]
  • [ 85953-29-3 ]
  • [ 773874-76-3 ]
YieldReaction ConditionsOperation in experiment
99% With potassium carbonate; a) 2-Chloro-4-dimethylamino-benzoic acid methyl ester (1a) To a stirred solution of 4,00g (20.6 mmol) <strong>[85953-29-3]2-chloro-4-fluoro-benzoic acid methyl ester</strong> (Apollo) and 60 ml dimethylsulphoxid are added 2.03 g (24,7 mmol) dimethylamine hydrochloride and 5,97 g (43.2 mmol) potassium carbonate. The reaction mixture is stirred over night and is reduced with high vacuum rotation evaporator at 65C. The residue is diluted with dichloromethane, washed twice with water. The combined water phases are extracted with dichloromethane. The combined dichloromethane phases are washed with diluted sodium hydrogen carbonate solution, dried with sodium sulphate and concentrated. The oily crude product 1a is obtained in 99% yield (4,36 g, 20.4 mmol) and is used for the next step without purification. MS-ESI: 213/215 (M+ +1, 64/48).
  • 13
  • [ 506-59-2 ]
  • [ 85953-29-3 ]
  • [ 773874-76-3 ]
YieldReaction ConditionsOperation in experiment
99% With potassium carbonate; In dimethyl sulfoxide; To a stirred solution of 4,00g (20.6 mmol) <strong>[85953-29-3]2-chloro-4-fluoro-benzoic acid methyl ester</strong> (Apollo) and 60 ml dimethylsulphoxid are added 2.03 g (24,7 mmol) dimethylamine hydrochloride and 5,97 g (43.2 mmol) potassium carbonate. The reaction mixture is stirred over night and is reduced with high vacuum rotation evaporator at 65C. The residue is diluted with dichloromethane, washed twice with water. The combined water phases are extracted with dichloromethane. The combined dichloromethane phases are washed with diluted sodium hydrogen carbonate solution, dried with sodium sulphate and concentrated. The oily crude product 2.3.3.a is obtained in 99% yield (4,36 g, 20.4 mmol) and is used for the next step without purification. MS-ESI: 213/215 (M+ +1, 64 / 48). Elementary analysis: Calculated: C 56.21% H 5.66% N 6.56% Determined: C 56.39% H 5,67% N 6.54%
99% With potassium carbonate; In dimethyl sulfoxide; Example 1a) 2-Chloro-4-dimethylamino-benzoic acid methyl ester (1a)To a stirred solution of 4,0Og (20.6 mmol) <strong>[85953-29-3]2-chloro-4-fluoro-benzoic acid methyl ester</strong> (Apollo) and 60 ml dimethylsulphoxid were added 2.03 g (24,7 mmol) dimethylamine hydrochloride and 5,97 g (43.2 mmol) potassium carbonate. The reaction mixture was stirred over night and is reduced with high vacuum rotation evaporator at 65C. The residue was diluted with dichloromethane, washed twice with water. The combined water phases were extracted with dichloromethane. The combined dichloromethane phases were washed with diluted sodium hydrogen carbonate solution, dried with sodium sulphate and concentrated. The oily crude product 1a was obtained in 99 % yield (4,36 g,20.4 mmol) and was used for the next step without purification.MS-ESI: 213 / 215 (M+ +1 , 64 / 48). Elementary analysis:Calculated: C 56.21% H 5.66% N 6.56% Determined: C 56.39% H 5,67% N 6.54%
  • 14
  • [ 85953-29-3 ]
  • [ 234082-20-3 ]
  • 15
  • [ 85953-29-3 ]
  • [ 234082-21-4 ]
  • 16
  • [ 85953-29-3 ]
  • [ 234081-34-6 ]
  • 17
  • [ 85953-29-3 ]
  • (S)-2-Benzenesulfonylamino-3-[2-chloro-4-(4-pyrimidin-2-yl-piperazin-1-yl)-benzoylamino]-propionic acid; compound with trifluoro-acetic acid [ No CAS ]
  • 18
  • [ 85953-29-3 ]
  • [ 911312-88-4 ]
  • 19
  • [ 85953-29-3 ]
  • [ 313674-12-3 ]
  • 20
  • [ 85953-29-3 ]
  • [ 233755-70-9 ]
  • 24
  • [ 85953-29-3 ]
  • [ 896723-26-5 ]
  • 25
  • [ 85953-29-3 ]
  • 2-chloro-4-piperidin-1-yl-benzoyl chloride [ No CAS ]
  • 26
  • [ 85953-29-3 ]
  • [ 175153-55-6 ]
  • 27
  • [ 85953-29-3 ]
  • [ 313674-11-2 ]
  • 28
  • [ 85953-29-3 ]
  • (2-chloro-4-pyrazol-1-yl-phenyl)-(2,3,4,5-tetrahydro-benzo[<i>b</i>]azepin-1-yl)-methanone [ No CAS ]
  • 30
  • [ 85953-29-3 ]
  • (2-chloro-4-(pyrrolidine-1-yl)phenyl)(2,3,4,5-tetrahydro-1H-benzo[b]azepin-1-yl) methanone [ No CAS ]
  • 31
  • [ 85953-29-3 ]
  • (2-chloro-4-morpholin-4-yl-phenyl)-(2,3,4,5-tetrahydro-benzo[<i>b</i>]azepin-1-yl)-methanone [ No CAS ]
  • 32
  • [ 85953-29-3 ]
  • (2-chloro-4-piperidin-1-yl-phenyl)-(2,3,4,5-tetrahydro-benzo[<i>b</i>]azepin-1-yl)-methanone [ No CAS ]
  • 33
  • [ 85953-29-3 ]
  • (2-chloro-4-pyrrolidin-1-yl-phenyl)-(7-chloro-2,3,4,5-tetrahydro-benzo[<i>b</i>]azepin-1-yl)-methanone [ No CAS ]
  • 34
  • [ 85953-29-3 ]
  • [ 127511-00-6 ]
  • 35
  • [ 85953-29-3 ]
  • C12H9FN2O3 [ No CAS ]
 

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