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CAS No. : | 70291-62-2 | MDL No. : | MFCD00121495 |
Formula : | C8H8N2S | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | RILAXFOADRDGPQ-UHFFFAOYSA-N |
M.W : | 164.23 | Pubchem ID : | 258182 |
Synonyms : |
|
Num. heavy atoms : | 11 |
Num. arom. heavy atoms : | 5 |
Fraction Csp3 : | 0.38 |
Num. rotatable bonds : | 0 |
Num. H-bond acceptors : | 1.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 46.06 |
TPSA : | 78.05 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | Yes |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -5.73 cm/s |
Log Po/w (iLOGP) : | 1.78 |
Log Po/w (XLOGP3) : | 2.21 |
Log Po/w (WLOGP) : | 1.7 |
Log Po/w (MLOGP) : | 0.77 |
Log Po/w (SILICOS-IT) : | 2.97 |
Consensus Log Po/w : | 1.89 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -2.59 |
Solubility : | 0.425 mg/ml ; 0.00259 mol/l |
Class : | Soluble |
Log S (Ali) : | -3.48 |
Solubility : | 0.0539 mg/ml ; 0.000328 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.21 |
Solubility : | 1.0 mg/ml ; 0.0061 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 2.47 |
Signal Word: | Danger | Class: | 6.1 |
Precautionary Statements: | P261-P280-P305+P351+P338-P311 | UN#: | 3439 |
Hazard Statements: | H302+H312-H315-H319-H331-H335 | Packing Group: | Ⅲ |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With sulphur; triethylamine In lithium hydroxide monohydrate at 20℃; for 6h; | |
90% | With morpholine; sulphur In ethanol at 30℃; for 8h; | General procedure for the preparation of the substituted 2-aminothiophene-3-carbonitriles (1a-d) General procedure: These compounds were prepared according to literature procedures with slight modification [19, 20]. Briefly, morpholine (5 mL, 60 mmol) was slowly added to a mixture of ketone (50 mmol), malonodinitrile (3.3 g, 50 mmol), and sulphur (1.6 g, 50 mmol) in ethanol (75 mL) at 30 °C. Then, the mixture was stirred for 8 h at this temperature. After completion, the reaction mixture was filtered, and the resulting filtrate was poured into cold water, and allowed to stand for 1 h. Finally, the precipitate was filtered, washed with cold aqueous ethanol (50%), and recrystallized from ethanol to give the desired Gewald product. |
85% | With sulphur; calcined Mg-Al hydrotalcite In ethanol at 60℃; for 12h; |
85% | With sulphur at 60℃; for 2h; Ionic liquid; Green chemistry; | 4,5-Alkyl-2-aminothiophenes (2a-2j) General procedure: For the synthesis of 4,5-alkyl-2-aminothiophenes (2a-2j), the general procedures are the same as those of compound 2i. A mixture of N-benzyl-4-piperidone (1i, 380 mg, 2 mmol), malononitrile (132 mg, 2 mmol), sulfur (64 mg, 2 mmol), and basic ionic liquid (bmIm)OH (380 mg, 2.4 equiv.) was heated to 60°C for 2 h. The reaction mixture was cooled to room temperature and washed with diethyl ether or ethyl acetate (340 mL),and the organic layers were concentrated under vacuum to obtain an oily crude product. The crude product was dissolved in ether/hexane (3:1, 50 mL) mixture, insoluble material was decanted, and the organic layer was concentrated to 1/4 of the volume and kept in a refrigerator. The precipitate that formed was filtered and dried. |
82% | With sulphur; trimethyl-(2-hydroxyethyl)ammonium chloride; urea; sodium hydroxide In lithium hydroxide monohydrate at 60℃; Green chemistry; | Typical procedure for the synthesis of 2-aminothiophene derivatives General procedure: A mixture of 0.070 g 4-propylcyclohexanone (0.5 mmol),0.030 g malononitrile (0.5 mmol), 0.019 g sulfur powder(0.6 mmol), and 0.1 cm3 NaOH (4 mol dm-3 aqueoussolution) in 1 cm3 choline chloride/urea was stirred at 60°C for 2-3 h. After completion of the reaction, indicated by TLC monitoring, 5 cm3 water was added. The solid product was separated by filtration and if necessary the precipitate recrystallized from EtOH to afford the corresponding pure product |
81% | With potassium carbonate; sulphur In ethanol for 3h; Reflux; | Synthesis of 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (1): Cyclopentanone (0.84 g, 10 mmol), malononitrile (0.66 g, 10 mmol), elemental sulfur (0.35 g, 11.0 mmol), K2CO3 (0.28 g, 2.0 mmol) and 15 mL of dry ethanol were stirred at reflux for 3 h. The insoluble material was filtered off, and the solvent was removed by evaporation under reduced pressure. The crude product was washed with water and recrystallized from ethanol to give yellowish crystals in 81% yield. Mp 152-153 °C (Lit. [21]: 151 °C). |
80% | With morpholine; sulphur In ethanol at 45 - 60℃; for 18.25h; | |
79% | With sulphur; <i>L</i>-proline In N,N-dimethyl-formamide at 60℃; for 10h; | |
79.94% | With morpholine; sulphur In ethanol at 20 - 60℃; for 5.5h; | |
75% | With sulphur at 100℃; for 2h; Green chemistry; | |
75% | With sulphur at 100℃; for 0.0833333h; Green chemistry; | |
71% | With sulphur In neat (no solvent) at 60℃; for 2h; | General procedure forpreparation of2-aminothiophenes General procedure: General procedure forpreparation of2-aminothiophenes |
67.12% | With morpholine; sulphur In ethanol at 0 - 60℃; for 2.75h; | |
65% | With sulfur; bovine serum albumine In N,N-dimethyl-formamide at 50℃; for 4h; | 2.2. General procedure for the synthesis of 2-aminothiophenes General procedure: A mixture of 1 (1 mmol), 2 (1 mmol), elemental sulfur (1 mmol)and BSA (20 mg) was added to 1 mL of DMF. The reaction was incubatedat 50 C and 200 rpm. After the required time, the BSA wasfiltered off to terminate the reaction. For the products with highyields, the solid crude products precipitated in water, and then followedby filtration and drying. For the products with low yields,the crude residues were purified by flash column chromatographyon silica gel using petroleum/ethyl acetate. |
63% | Stage #1: cyclopentanone; malononitrile In lithium hydroxide monohydrate for 0.333333h; Sonication; Green chemistry; Stage #2: With Na2S6 In lithium hydroxide monohydrate for 0.5h; Sonication; Green chemistry; | General experimental procedure General procedure: A 50ml round-bottomed flask was charged with α-methylene carbonyl compound 10 (5 mmol),malononitrile 11 (5 mmol), and 25 ml H2O, which was stirred for 20 min under heating or ultrasoundirradiation. Subsequently, sodium polysulfide 12 (5 mmol) was added and stirred at 70Cunder conventional heating or ultrasound irradiation. The mixture became turbid at the end of thereaction, which was poured into cold water. The crude product was isolated by filtration and wasfurther purified by recrystallization with ethanol to afford pure 2-aminothiophenes. All the productswere isolated, and their isolated yields are given in Table 2. Identities of the products wereestablished by comparison of their physical and spectral data with those of reported compounds. |
57% | With sulphur In ethanol at 100℃; for 0.133333h; microwave irradiation; | |
55% | With zinc ferrite; sulphur In neat (no solvent) at 100℃; for 4h; Green chemistry; | |
49% | With zinc oxide nanoparticles; sulphur In neat (no solvent) at 100℃; for 6h; | 4.5 General procedure for the synthesis of 2-aminothiophenes derivatives 10 mmol of ketone or aldehyde, 10 mmol of malonodinitrile, and 10 mmol of sulfur powder were mixed. Then, 0.02 g (2.5 mol%) of ZnO nano-particles was added and the mixture was heated to 100 °C with good stirring for the required time. After 6 h, the reaction was stopped and the corresponding product was worked up by 10 ml of ethanol and ZnO was separated by a simple filtration. Thereafter, the reaction mixture was cooled to room temperature and poured into 150 ml of ice-water. The precipitate was filtered off, washed with cold water and dried. To further purification, the crude product was purified by silica gel column chromatography with 10:1 hexane:ethyl acetate as eluent. |
47% | With sulphur In ethanol for 4h; Reflux; | |
46% | With morpholine; cyanoacetic acid tert-butyl ester; sulphur In ethanol at 40℃; for 20h; | 4.2.1.1 Method A: preparation of 2-Amino-3-substituted thiophenes via the Gewald reaction General procedure: A mixture of ketone (1.0 eq.), sulfur powder (1.0 eq.) and t-butyl cyanoacetate, ethyl cyanoacetate or malononitrile (1.0 eq.) in EtOH (2mL/mmol) was prepared before morpholine (1.0 eq.) was added dropwise, ensuring that the reaction did not heat up above 60°C during the addition. The mixture was then heated at 40°C and stirred for 4-20h. |
42% | With sulphur; diethylamine In neat (no solvent) for 0.333333h; Milling; | General procedure General procedure: Cyclohexanone (0.0981 g, 1.0 mmol), malononitrile (0.0660 g,1.0 mmol), elemental sulfur (0.0384 g, 1.2 mmoL) was vigorouslyshaken by HSVM for a designated time.The product was purified by chromatography on silica gel and elutedusing CH2Cl2 as the eluent to afford the desired product 2-amino-5,6-dihydro-4H-cyclopenta[b]-thiophene-3-carbonitrile as colourlesssolid. |
31% | With morpholine; sulphur In ethanol at 80℃; for 2h; | 40.a To a stirred solution of 6.28 g (0.095 mol) malonitrile in 100 ml ethanol was added 8.00 g (0.095 mol) cyclopentanone, 3.04 g (0.095 mol) sulfur, and 8.29 ml (0.095 mol) morpholine. The mixture was heated at 80 0C for 2 h and then poured onto water and extracted three times with ethyl acetate. The combined organic phases were dried over sodium sulfate and concentrated in vacuo. Flash chromatography (heptane / ethyl acetate 3:1) afforded 4.89 g (31%) 2-amino-5)6-dihydro-4H-cyclopenta[bjthiophene-3- carbonitrile as a light brown solid. ES-MS m/e (%): 165 (M+H+, 100). |
With sulphur; triethylamine | ||
With sulphur; diethylamine In ethanol at 0 - 20℃; for 3.16667h; | 12.1 3-Methyl-2-phenyl-pentanoic acid (3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-amide Step 1: Preparation of 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene. diethylamine (2.50 ML) was added dropwise to a stirred solution of cyclopentanone (2.21 ML; 25.0 mmol), malononitrile (1.67 g; 25.0 mmol) and sulfur (0.80 g; 25.0 mmol) in absolute ethanol (10 ML) under nitrogen at 0° C. After 10 min., the mixture was allowed to warm to room temperature and stirred for 3 h.The mixture was then concentrated in vacuo and the crude residue was chromatographed (Merck silica gel 60, 230-400 mesh; Eluent: 30% ethyl acetate/hexanes) to provide 1.18 g of 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene as a light brown foam. | |
With morpholine; sulphur In ethanol Reflux; | ||
With morpholine; sulphur In ethanol at 20℃; | ||
With morpholine; sulphur In ethanol at 20℃; | ||
With morpholine; sulphur In ethanol at 5 - 10℃; for 3h; | ||
With sulphur; potassium fluoride on alumina In ethanol at 100℃; Inert atmosphere; Microwave irradiation; | Method A General procedure for the synthesis of 2-amino-carboxyamide thiophene by modifying an existing protocol.[2] General procedure: A microwave vial was charged with cyclopentanone (1 g, 11.9 mmol), cyanoacetamide (1 equiv., 1 g), elemental sulfur (1 equiv., 3 g), and KF-alumina (1.3 equiv., 2.5 g), then capped and dry EtOH (18 mL) was added. The solvent was degassed by bubbling N2 through the solvent for 5-10 min before it was heated in microwave to 100°C for 5-10 min. The KF-alumina was filtered off and washed with THF, and the collected solution was added to ice-cold water (250-300 mL). If the product was crashed out from the aqueous solution, it was filtered off to afford 2-amino-3-carboxamide. Otherwise, the volatile solvents were evaporated under vacuum and the residual precipitate was collected.. The product was dried under high vacuum to afford amino carboxamide in 12-76% yields. The products were characterized by NMR and used as it is without further purification. | |
With morpholine; sulphur In ethanol at 5 - 10℃; for 3h; | ||
With morpholine; sulphur In ethanol at 60℃; for 24h; | ||
With morpholine; sulphur In ethanol | ||
With sulphur In ethanol for 4h; Reflux; | ||
With sulphur In ethanol | ||
With sulphur; potassium carbonate In ethanol | ||
With sulphur In ethanol at 60℃; | 4.2 Synthesis of compounds 4.2.1 Synthesis of compounds 2a~2k General procedure: General method A:To a solution of cyclic ketone compounds in anhydrous ethanol (conc. 0.1M) was added sodium (6%mmol), sulfur (1.1eq) and malononitrile (1eq) or ethyl cyanoacetate (1eq) at 60°C. The reaction mixture was stirred for 4-7h. After the completion of the reaction, the reaction solution was concentrated and purified by flash column chromatography with solution of EtOAc/petroleum ether to obtain compounds. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With acetic acid for 0.5h; Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | In acetonitrile for 2h; Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In toluene for 20h; Heating; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: p-TSA / benzene / 0.5 h / Heating 2: NaCNBH3 / benzene |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: p-TSA / benzene / 0.5 h / Heating 2: NaCNBH3 / benzene |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: 74 percent / K2CO3 / N,N-dimethyl-acetamide |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: 40 percent / BH3 / tetrahydrofuran / 2 h / 65 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: 55 percent / aq. H2SO4 / 21 h |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: 40 percent / BH3 / tetrahydrofuran / 2 h / 65 °C 4: 59 percent / CH2Cl2 / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: dioxane / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: N,N-dimethyl-acetamide / 85 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: triethylamine / tetrahydrofuran / 16 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: dioxane / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: N,N-dimethyl-acetamide / 85 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: triethylamine / tetrahydrofuran / 16 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: toluene / 20 h / Heating 2: triethylamine / tetrahydrofuran / 20 °C 3: triethylamine / tetrahydrofuran / 16 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 77 percent / 8 h / Heating | ||
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 81.2 percent / ethanol / 4 h / Heating | ||
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 82.5 percent / 4 h / Heating |
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 68.2 percent / dimethylformamide / 4 h / Heating | ||
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 82.24 percent / 6 h / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: 10 h / Heating | ||
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: ethanol / 3 h / Heating | ||
Multi-step reaction with 3 steps 1: 63.42 percent / 4 h / Heating 2: 82.3 percent / N2H4*H2O / ethanol 3: ethanol / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: ethanol / 0.25 h / Heating 4: 90 percent / 1.) saturated HCl/EtOH, 2.) dil. NaOH/H2O / 0.75 h / Heating | ||
Multi-step reaction with 5 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: 72 percent / triethylamine / CH2Cl2 / 1 h / Ambient temperature 4: 1.) PCl5, 2.) SnCl4 / 1.) benzene, reflux, 2 h, 2.) CHCl3, reflux, 8 h 5: LiAlH4 / diethyl ether / 12 h / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: ethanol / 0.25 h / Heating 4: 85 percent / 1.) saturated HCl/EtOH, 2.) dil. NaOH/H2O / 0.75 h / Heating | ||
Multi-step reaction with 5 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: 70 percent / triethylamine / CH2Cl2 / 1 h / Ambient temperature 4: 85 percent / POCl3 / 2 h / Heating 5: LiAlH4 / diethyl ether / 12 h / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 4 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: 91 percent / ethanol / 0.25 h / Heating 4: 72 percent / 1.) saturated HCl/EtOH, 2.) dil. NaOH/H2O / 0.75 h / Heating | ||
Multi-step reaction with 5 steps 1: 77 percent / glacial acetic acid / 0.5 h / Heating 2: 91 percent / LiAlH4 / diethyl ether / 24 h / Heating 3: 78 percent / triethylamine / CH2Cl2 / 1 h / Ambient temperature 4: 37 percent / POCl3 / 2 h / Heating 5: LiAlH4 / diethyl ether / 12 h / Heating |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
at 20℃; for 20h; | 15.2 N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2-cyclopentyl-2-phenyl-acetamide Step 2: Preparation of N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2-cyclopentyl-2-phenyl-acetamide Reaction of α-phenylcyclopentaneacetyl chloride (Prepared in Example 12, Step1) and 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene (164 mg; 1.0 mmol) according to the procedure outlined in Example 5 for 20 h at room temperature provided after workup, crude product which triturated with diethylether to give 111 mg of which was further purified by recrystallization from ethylacetate/hexanes to provide 44 mg (%) of N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2-cyclopentyl-2-phenyl-acetamide as a light brown solid. EI-HRMS m/e calcd for C21H32N2OS (M+) 350.1453, found 350.1456. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
11% | With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride for 19h; | 17 Example 17 Example 17 N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2-phenyl-propionamide EDCI (42 mg; 0.219 mmol) was added to a solution of 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene (18 mg; 0.11 mmol) and 2-phenylpropionic acid (30 μL; 0.22 mmol).After stirring for 19 h, the reaction mixture was applied directly to a silica gel column (Merck silica gel 60; eluent: 12.5%-33% ethyl acetate/hexanes) to provide 3.5 mg (11%) of N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2-phenyl-propion as a white solid. ES-HRMS m/e calcd for C17H16N2OS (M+H+) 297.1056, found 297.1058. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
23% | With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride for 19h; | 16 Example 16N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2,2-diphenyl-acetamide Example 16 N-(3-Cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-2,2-diphenyl-acetamide EDCI (59 mg; 0.308 mmol) was added to a solution of 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene (25 mg; 0.152 mmol) and 2,3-diphenylpropionic acid (70 mg; 0.309 mmol).After stirring for 19 h, the reaction mixture was applied directly to a silica gel column (Merck silica gel 60; eluent: 10%-33% ethyl acetate/hexanes) to provide 13.0 mg (23%) of N-(3-Cyano-5,6-dihydro-4H-cyclopenta [b]thiophen-2-yl)-2,2-diphenyl-acetamide as a white solid. EI-HRMS m/e calcd for C22H18N2OS (M+H+) 358.1140, found 358.1140. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
24% | at 20℃; for 20h; | 12.2 3-Methyl-2-phenyl-pentanoic acid (3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-amide Step 2: Preparation of 3-Methyl-2-phenyl-pentanoic acid (3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-amide Reaction of 3-methyl-2-phenylvaleryl chloride (Prepared in Example 7, Step1) and 2-Amino-3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophene (164 mg; 1.0 mmol) according to the procedure outlined in Example 5 for 20 h at room temperature provided after workup, crude which triturated with diethylether to give 94 mg of crude 3-Methyl-2-phenyl-pentanoic acid (3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-amide which was further purified by dissolving in methylene chloride and passing through a short plug of Merck silica gel 60 to provide 82 mg (24%) of 3-Methyl-2-phenyl-pentanoic acid (3-cyano-5,6-dihydro-4H-cyclopenta[b]thiophen-2-yl)-amide as a mixture of diastereomers. ES-HRMS m/e calcd for C26H38N2O2 (M+Ht) 411.3006, found 411.3011. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
5% | Stage #1: 1-cyclopropyl-3-methoxy-but-2-en-1-one; 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile With toluene-4-sulfonic acid In toluene for 2h; Heating / reflux; Stage #2: With tin(IV) chloride In acetic acid butyl ester for 0.5h; Heating / reflux; Stage #3: With sodium hydroxide In acetic acid butyl ester; water; ethyl acetate | 40.b To a stirred solution of 0.30 g (1.83 mmol) of 2-ammo-5,6-dihydro-4H-cyclopenta[b] thiophene-3-carbonitrile in 6 ml toluene was added 0.30 g (2.14 mmol) l-cyclopropyl-3- methoxy-but-2-en-l-on.e and 3 mg of p-toluenesulfonic acid. The mixture was heated at reflux for 2 hours, concentrated in vacuo, partitioned between ethyl acetate and water. The combined organic phases were dried over sodium sulfate and evaporated to dryness. The residue was taken up in n-butyl acetate 6 ml and 1.018 g (3.91 mmol) tin (IV) chloride was heated under reflux for 30 minute and allowed to cool. The mixture was EPO partitioned between aqueous sodium hydroxide and ethyl acetate. Flash chromatography (heptane / ethyl acetate 3:1) afforded 25 mg (5%) (4-amino-6-methyl-2,3-dihydro-lH-8- thia-7-aza-cyclopenta[a]inden-5-yl)-cyclopropyl-methanone as a white solid. ES-MS m/e (%): 273 (M+H+, 100). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1: 58% 2: 41% | With sulfur; tetraethylammonium hexafluorophosphate; acetonitrile at 20℃; Electrolysis; Inert atmosphere; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
15.3 g | In acetone at 20℃; Cooling with ice; | |
In acetone at 20℃; | ||
In 1,4-dioxane |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
66% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87.42% | Stage #1: cyclohexanone; 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile With zinc(II) chloride for 6h; Reflux; Stage #2: With sodium hydroxide In water | 10 EXAMPLE 10: 2>3>6J,8,9-Hexahydro-l«-cyclopenta[4,5]thieno[2>3-&]quinolin-10- amine (BN-14); 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile(0.0065moles) was added to cyclohexanone (0.013moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065moles) and reaction mixture heated under reflux for 6 hours. The mixture waas cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. Separated precipitate was collected by vaccum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase.Yield (%): 1.30 grams (87.42%), mp: 2420C; IR (KBr): 3510(NH2), 3322, 3175, 2910,2819cm"1; 1H NMR (CDCl3): δ 1.85-1.94(m, 4H, 2CH2), 2.44-2.55(m, 4H, 2CH2), 2.84-2.92 (t, 2H, CH2), 2.93- 3.02 (m, 2H, CH2), 3.04-3.12 (m, 2H, CH2), 4.28 (s, 2H, NH2, D2O exchangea ble); MS (ESIMS): m/z 245[M]+ ; Elemental Analysis: CaIc. for C14H16N2S: C, 68.81; H, 6.60; N, 11.46. Found: C, 68.65; H, 6.83; N, 11.62%. |
87.42% | With zinc(II) chloride for 6h; Reflux; | 10 Example 10 2,3,6,7,8,9-Hexahydro-1H-cyclopenta[4,5]thieno[2,3-b]quinolin-10-amine (BN-14) 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065 moles) was added to cyclohexanone (0.013 moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065 moles) and reaction mixture heated under reflux for 6 hours. The mixture was cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. Separated precipitate was collected by vacuum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.30 grams (87.42%), mp: 242° C.; IR (KBr): 3510 (NH2), 3322, 3175, 2910, 2819 cm-1; 1H NMR (CDCl3): δ 1.85-1.94 (m, 4H, 2CH2), 2.44-2.55 (m, 4H, 2CH2), 2.84-2.92 (t, 2H, CH2), 2.93-3.02 (m, 2H, CH2), 3.04-3.12 (m, 2H, CH2), 4.28 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 245[M]+; Elemental Analysis: Calc. for C14H16N2S: C, 68.81; H, 6.60; N, 11.46. Found: C, 68.65; H, 6.83; N, 11.62%. |
81% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
80% | With zinc(II) chloride for 4h; Reflux; | |
33.5% | With sodium ethanolate at 120℃; for 3h; UV-irradiation; | General Procedure for the Synthesis of 3 and 4 General procedure: To a 120 °C mixture of compound 1 (1 mmol) and corresponding ketone 2 (3 mL), 1 mL fresh sodium ethoxide solution (1 mol/L) was added dropwise under stirring, and then the reaction mixture was heated for 3.0 hours with a 380 nm UV lamp irradiation. The reaction mixture was cooled to room temperature after the reaction was finished by TLC monitoring. The resulting precipitate was collected by filtration. The target product compounds 3 were obtained through washing alternately with water and methanol for several times and dried. The compounds 4 were obtained by column chromatography on silica gel (200-300 mesh silica gels) with ethyl acetate-petroleum ether (1:3, v:v) as eluent. The chemical structures of target compounds 3 were fully characterized by IR, 1H NMR, 13C NMR, and HRMS while product 3a was unequivocally confirmed by X-ray diffraction analysis (Fig. 2). Additionally, the compounds 4 were partly characterized by IR, 1HNMR, 13C NMR, and HRMS with the TLC and MS assisted detection which could show the conversion response. |
20% | With aluminum (III) chloride In 1,2-dichloro-ethane for 24h; Inert atmosphere; Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
18% | With aluminum (III) chloride In 1,2-dichloro-ethane for 24h; Inert atmosphere; Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
28% | With aluminum (III) chloride In 1,2-dichloro-ethane for 24h; Inert atmosphere; Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With toluene-4-sulfonic acid In toluene Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82.02% | Stage #1: 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile; cyclopentanone With zinc(II) chloride for 6h; Reflux; Stage #2: With sodium hydroxide In water | 9 EXAMPLE 9: 1,2,3,6,7,8-hexahydrocyclopenta [b] cyclopenta [4,5] thieno [3,2-e] pyridin-9-amine (BN-13); 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065moles) was added to cyclopentanone (0.013moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065moles) and the reaction mixture heated under reflux for six hours. The mixture was cooled and added to 50 ml of 40% sodium hydroxide solution in water to release the product from zinc chloride complex. The precipitate was collected by vaccum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase.Yield (%): 1.15 grams (82.02%); mp: 2450C; IR (KBr): 3504 cm"1 (NH2), 1H NMR (CDCl3, ppm): 6 2.1-2.18 (2H, m, CH2), 2.42-2.48(m, 2H, CH2), 2.69-2.72 (t, 2H, CH2), 2.90- 2.92 (m, 4H, 2CH2), 3.02-3.04 (m, 2H, CH2) 4.18 (s, 2H, NH2, D2O exchangea ble); MS (ESIMS): m/z 233 [M++l] 100% ; Elemental Analysis: CaIc. for C13H14N2S: C, 67.79; H, 6.13; N, 12.16; Found: C, 68.05; H, 7.31; N, 11.91%. |
82.02% | With zinc(II) chloride for 6h; Reflux; | 9 Example 9 1,2,3,6,7,8-hexahydrocyclopenta [b]cyclopenta[4,5] thieno[3,2-e]pyridin-9-amine (BN-13) 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065 moles) was added to cyclopentanone (0.013 moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065 moles) and the reaction mixture heated under reflux for six hours. The mixture was cooled and added to 50 ml of 40% sodium hydroxide solution in water to release the product from zinc chloride complex. The precipitate was collected by vacuum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.15 grams (82.02%); mp: 245° C.; IR (KBr): 3504 cm-1 (NH2), 1H NMR (CDCl3, ppm): δ 2.1-2.18 (2H, m, CH2), 2.42-2.48 (m, 2H, CH2), 2.69-2.72 (t, 2H, CH2), 2.90-2.92 (m, 4H, 2CH2), 3.02-3.04 (m, 2H, CH2) 4.18 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 233 [M++1] 100%; Elemental Analysis: Calc. for C13H14N2S: C, 67.79; H, 6.13; N, 12.16. Found: C, 68.05; H, 7.31; N, 11.91%. |
75% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
72% | With zinc(II) chloride for 4h; Reflux; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85.82% | Stage #1: 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile; cycloheptanone With zinc(II) chloride for 6h; Reflux; Stage #2: With sodium hydroxide In water | 12 EXAMPLE 12: l,2,3,6,7,8,9,10-Octahydrocyclohepta[&]cyclopenta[4,5]thieno [3,2- e] pyridine-11-amine (BN-16); 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile(0.0065moles) was added to cycloheptanone (0.013moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065moles) and reaction mixture heated under reflux for six hours. Mixture was cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. The separated precipitate was collected by vaccum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.35 grams (85.82%); mp: 244.60C; IR (KBr): 3507(NH2), 3308, 3125, 2908, 2819cm"1; 1H NMR (CDCl3): δ 1.70-1.75(m, 2H, CH2), 1.80-1.92(t, 2H, CH2), 2.15- 2.20(t, 2H, CH2), 2.48-2.55(t, 2H, CH2), 2.62-2.68(t, 2H, CH2), 2.95-3.05(m, 4H, 2CH2), 3.08-3.15(m, 2H, CH2), 4.30 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 259[M]+ ; Elemental Analysis: CaIc. for C15H18N2S: C, 69.73; H, 7.02; N, 10.84. Found: C, 69.91; H, 7.24; N, 10.59%. |
85.82% | With zinc(II) chloride for 6h; Reflux; | 12 Example 12 1,2,3,6,7,8,9,10-Octahydrocyclohepta[b]cyclopenta[4,5]thieno[3,2-e]pyridine-11-amine (BN-16) 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065 moles) was added to cycloheptanone (0.013 moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065 moles) and reaction mixture heated under reflux for six hours. Mixture was cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. The separated precipitate was collected by vacuum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.35 grams (85.82%); mp: 244.6° C.; IR (KBr): 3507 (NH2), 3308, 3125, 2908, 2819 cm-1; 1H NMR (CDCl3): δ 1.70-1.75 (m, 2H, CH2), 1.80-1.92 (t, 2H, CH2), 2.15-2.20 (t, 2H, CH2), 2.48-2.55 (t, 2H, CH2), 2.62-2.68 (t, 2H, CH2), 2.95-3.05 (m, 4H, 2CH2), 3.08-3.15 (m, 2H, CH2), 4.30 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 259[M]+; Elemental Analysis: Calc. for C15H18N2S: C, 69.73; H, 7.02; N, 10.84. Found: C, 69.91; H, 7.24; N, 10.59%. |
45.2% | With sodium ethanolate at 120℃; for 3h; UV-irradiation; | General Procedure for the Synthesis of 3 and 4 General procedure: To a 120 °C mixture of compound 1 (1 mmol) and corresponding ketone 2 (3 mL), 1 mL fresh sodium ethoxide solution (1 mol/L) was added dropwise under stirring, and then the reaction mixture was heated for 3.0 hours with a 380 nm UV lamp irradiation. The reaction mixture was cooled to room temperature after the reaction was finished by TLC monitoring. The resulting precipitate was collected by filtration. The target product compounds 3 were obtained through washing alternately with water and methanol for several times and dried. The compounds 4 were obtained by column chromatography on silica gel (200-300 mesh silica gels) with ethyl acetate-petroleum ether (1:3, v:v) as eluent. The chemical structures of target compounds 3 were fully characterized by IR, 1H NMR, 13C NMR, and HRMS while product 3a was unequivocally confirmed by X-ray diffraction analysis (Fig. 2). Additionally, the compounds 4 were partly characterized by IR, 1HNMR, 13C NMR, and HRMS with the TLC and MS assisted detection which could show the conversion response. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90.44% | Stage #1: cycloactanone; 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile With zinc(II) chloride for 6h; Reflux; Stage #2: With sodium hydroxide In water | 13 EXAMPLE 13: 2,3,6,7,8,9, 10, 11-Octahydro-l/f-cycloocta [fc]cyclopenta[4,5]thieno[3,2- e] pyridin-12-amine (BN-17); 2-Amino-5 , 6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065moles) was added to cyclooctanone (0.013moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065moles) and heated under reflux for six hours. The mixture was cooled and added to 50 ml of 40% NaOH solution in water to release the product from zinc chloride complex, collected the separated precipitate using vaccum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.50 grams (90.44%); mp: 2560C; IR (KBr): 3509 cm"1 (NH2); 1H NMR (CDCl3+DMSO-d6t ppm): δ 1.70-1.74 (m, 2H, CH2), 1.80-1.92(m, 4H, 2CH2), 2.15- 2.20(t, 2H, CH2), 2.48-2.55(t, 2H, CH2), 2.62-2.68 (t, 2H, CH2), 2.95-3.05(m, 4H, 2CH2), 3.08-3.15(m, 2H, CH2), 4.38 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 273[MM] 100%; Elemental Analysis: CaIc. for C16H20N2S: C, 70.55; H, 7.40; N, 10.28; Found: C, 70.75; H, 7.24; N1 10.53%. |
90.44% | With zinc(II) chloride for 6h; Reflux; | 13 Example 13 2,3,6,7,8,9,10,11-Octahydro-1H-cycloocta [b]cyclopenta[4,5]thieno[3,2-e]pyridin-12-amine (BN-17) 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065 moles) was added to cyclooctanone (0.013 moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065 moles) and heated under reflux for six hours. The mixture was cooled and added to 50 ml of 40% NaOH solution in water to release the product from zinc chloride complex, collected the separated precipitate using vacuum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.50 grams (90.44%); mp: 256° C.; IR (KBr): 3509 cm-1 (NH2); NMR (CDCl3+DMSO-d6, ppm): δ 1.70-1.74 (m, 2H, CH2), 1.80-1.92 (m, 4H, 2CH2), 2.15-2.20 (t, 2H, CH2), 2.48-2.55 (t, 2H, CH2), 2.62-2.68 (t, 2H, CH2), 2.95-3.05 (m, 4H, 2CH2), 3.08-3.15 (m, 2H, CH2), 4.38 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 273[M++1] 100%; Elemental Analysis: Calc. for C16H20N2S: C, 70.55; H, 7.40; N, 10.28; Found: C, 70.75; H, 7.24; N, 10.53%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76.28% | Stage #1: 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile; 3-Methylcyclohexanone With zinc(II) chloride for 6h; Reflux; Stage #2: With sodium hydroxide In water | 11 EXAMPLE 11: T-Methyl^.a.ej.S.Θ-hexahydro-lfi-cyclopentaW.δlthienoβ.S-b] quinolin-10-amine (BN-15); 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile(0.0065moles) was added to 3-methyl cyclohexanone (0.013moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065moles) and reaction mixture heated under reflux for 6 hours. Mixture was cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. Separated precipitate was collected by vaccum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.20 grams (76.28%); mp: 263.20C; IR (KBr): 3504(NH2), 3308, 3127, 2910, 2819cm"1, 1H NMR (CDCl3): δ 1.44-1.55(m, 3H, CH3), 1.95-2.05(m, 2H, CH2), 2.45- 2.60(m, 5H, 2CH2 CH), 3.0-3.12(m, 6H, 3CH2), 4.25 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 259[M]+ ' Elemental Analysis: CaIc. for C15H18N2S: C, 69.73; H, 7.02; N, 10.84. Found: C, 69.90; H, 7.28; N, 10.54%. |
76.28% | for 6h; Reflux; | 11 Example 11 7-Methyl-2,3,6,7,8,9-hexahydro-1H-cyclopenta[4,5]thieno[2,3-b]quinolin-10-amine (BN-15) 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (0.0065 moles) was added to 3-methyl cyclohexanone (0.013 moles) in 1:2 ratio along with anhydrous zinc chloride (0.0065 moles) and reaction mixture heated under reflux for 6 hours. Mixture was cooled and added to 50 ml of 40% NaOH solution in water to release product from zinc chloride complex. Separated precipitate was collected by vacuum filtration and purified by passing through a column using a mixture of hexane and ethyl acetate as mobile phase. Yield (%): 1.20 grams (76.28%); mp: 263.2° C.; IR (KBr): 3504 (NH2), 3308, 3127, 2910, 2819 cm-1, 1H NMR (CDCl3): δ 1.44-1.55 (m, 3H, CH3), 1.95-2.05 (m, 2H, CH2), 2.45-2.60 (m, 5H, 2CH2,CH), 3.0-3.12 (m, 6H, 3CH2), 4.25 (s, 2H, NH2, D2O exchangeable); MS (ESIMS): m/z 259[M]+; Elemental Analysis: Calc. for C15H18N2S: C, 69.73; H, 7.02; N, 10.84. Found: C, 69.90; H, 7.28; N, 10.54%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With silica gel; ytterbium(III) triflate for 0.0833333h; Microwave irradiation; Neat (no solvent); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
12% | With tert.-butylnitrite; copper(ll) bromide In acetonitrile at 0 - 20℃; for 0.0833333h; | 152 2-Amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile (500 mg, 3.04 mmol) was added to slurry of CuBr2 (816 mg, 3.65 mmol) and 90 wt% tert-butyl nitrite (0.4 mL, 3.04 mmol) in CH3CN (15 mL) at 0 0C (bath temp) in a 6 dram vial. The ice bath was removed, and the reaction mixture was stirred at RT for 5 min. A solution of 9:1 saturated aq. NH4CI/NH4OH (15 mL) and EtOAc (10 mL) were added. The layers were separated, and the aqueous layer was extracted with EtOAc (2 x 5 mL). The combined organic layers were washed with brine (1 x 10 mL) and concentrated. The crude product was purified by flash column chromatography to afford the title compound (86 mg, 12%). LC-MS m/z 228 (M)+, 1.13 min (ret time). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: copper(ll) bromide; tert.-butylnitrite / acetonitrile / 0.08 h / 0 - 20 °C 2: caesium carbonate / 2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; tris-(dibenzylideneacetone)dipalladium(0) / toluene / 15 h / 100 °C / Inert atmosphere |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 3 steps 1: copper(ll) bromide; tert.-butylnitrite / acetonitrile / 0.08 h / 0 - 20 °C 2: caesium carbonate / 2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; tris-(dibenzylideneacetone)dipalladium(0) / toluene / 15 h / 100 °C / Inert atmosphere 3: hydrogenchloride / 1,4-dioxane / 0.67 h / 20 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | Stage #1: inden-1-one; 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile With boron trifluoride diethyl etherate In toluene for 24h; Reflux; Stage #2: With sodium hydroxide In toluene for 24h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | In toluene at 80℃; for 24h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83.5% | Stage #1: bis(trichloromethyl) carbonate With triethylamine; Triphenylphosphine oxide In chlorobenzene at 20℃; for 0.5h; Cooling with ice; Stage #2: 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile In chlorobenzene at 120℃; for 7h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | With toluene-4-sulfonic acid In toluene for 72h; Reflux; Dean-Stark; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With toluene-4-sulfonic acid In toluene for 72h; Reflux; Dean-Stark; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
65% | With trichlorophosphate In toluene at 80℃; | Synthesis of 4-chloro-2-trifluoromethyl-6,7-dihydro-5H-clopenta[4,5]thieno[2,3-d]pyrimidine (2): A mixture of compound 1 (0.82 g, 5 mmol), TFA (0.5 mL), toluene (8 mL) and phosphoryl trichloride (1.5 mL) was heated to 80 °C with good stirring. The progress of the reaction was monitored by TLC with petroleum ether-ethyl acetate (3:1, v/v) as a developing solvent. Toluene was removed by vacuum distillation after the completion of the reaction. The residue was poured over crushed ice and neutralized with a saturated sodium bicarbonate solution. The aqueous mixture was extracted with diethyl ether and the organic layer was washed with water followed by saturated aqueous sodium chloride. After evaporation of the solvent, the residue was recrystallized from n-hexane to afford the yellowish compound 2 in 65% yield. Mp 142-143 °C. Anal. Calcd. for C10H6ClF3N2S: C 43.10, H 2.17, N 10.05; found: C 42.95, H 2.32, N 9.93. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Multi-step reaction with 2 steps 1: trichlorophosphate / toluene / 80 °C 2: potassium carbonate / acetonitrile / Reflux |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1,4-diaza-bicyclo[2.2.2]octane; sulfur In water at 20℃; for 7h; | Typical procedure for the one-pot Gewald reaction General procedure: A mixture of 1a (232 mg, 2.0 mmol) and 2a (132 mg, 2.0 mmol) in H2O (0.5 mL) and DABCO (224 μL, 2.0 mmol) was stirred at room temperature for 3 min and sulfur (64 mg, 2.0 mmol) was added to this mixture and stirring was continued at room temperature for another 4 h until TLC showed complete disappearance of the starting materials. The product 4aa, which precipitated at the end of the reaction, was separated by filtration. The pure product was obtained by recrystallization of the precipitates using EtOAc/hexane mixture. Product 4aa was obtained in 87% yield (341 mg). The product was identied based on its physical and spectral characteristics. The remaining compounds 4ab-4db were synthesized in a similar manner. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
56.9% | With zinc(II) chloride In N,N-dimethyl-formamide at 160℃; for 0.333333h; Microwave irradiation; Green chemistry; | General Procedure for the Synthesis of 6 General procedure: The microwave reactor "Initiator" (manufactured by Biotage,formerly Personal Chemistry) was used in all reactions: A solution of corresponding 1 (1 mmol), 0.5 mLmethanamide, ZnCl2 (1.2 mmol) and 1.5 mL DMF were added in a 5 mL tube, sealed and heated to 160oC for 20 min. After completion of the reaction as indicated by TLC, the mixture was cooled to roomtemperature and the precipitate was isolated by filtration and then purified by crystallization from 95%EtOH to provide the pure compounds 6 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | With acetic acid In ethanol at 20℃; for 24h; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With acetic acid; In ethanol; at 20℃; for 24h; | General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With acetic acid In ethanol at 20℃; for 24h; | General procedure for synthesis of 2-[(indolyl)methylene)amino]cycloalka[b]thiophene-3-carbonitrile (TN5, TN5 1-7, TN6,TN6 1-7, TN7, TN7 1-7, TN8, TN8 1-7). General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With acetic acid; In ethanol; at 20℃; for 24h; | General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With acetic acid In ethanol at 20℃; for 24h; | General procedure for synthesis of 2-[(indolyl)methylene)amino]cycloalka[b]thiophene-3-carbonitrile (TN5, TN5 1-7, TN6,TN6 1-7, TN7, TN7 1-7, TN8, TN8 1-7). General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
59% | With acetic acid In ethanol at 20℃; for 24h; | General procedure for synthesis of 2-[(indolyl)methylene)amino]cycloalka[b]thiophene-3-carbonitrile (TN5, TN5 1-7, TN6,TN6 1-7, TN7, TN7 1-7, TN8, TN8 1-7). General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With acetic acid; In ethanol; at 20℃; for 24h; | General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
58% | With acetic acid; In ethanol; at 20℃; for 24h; | General procedure: An equimolar mixture of Gewald adducts (5CN, 6CN, 7CN and 8CN) and substituted indole-carboxaldehydes in absolute ethanol with 0.5 mL of acetic acid was stirred under room temperature for 24 hs. Water was addedand the solid that precipitated out was filtered under vacuum, washed with water, dried and recrystallized from absolute ethanol (Scheme 1) according previously methodology [20]. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20% | Stage #1: 2-amino-5,6-dihydro-4H-cyclopenta[b]thiophene-3-carbonitrile; N,N'-bis-Boc-S-methyl-isothiourea With triethylamine In dichloromethane at 0℃; for 0.333333h; Stage #2: With mercury dichloride In dichloromethane at 0 - 20℃; | 4.2.1.2 Method B: synthesis of the boc-protected guanidinothiophene derivatives General procedure: A solution of the corresponding amine (1 eq.), Boc-protected S-methylthiopseudourea (1 eq.), TEA (∼3.5 eq.) in dry CH2Cl2 (10-20mL/mmol) was prepared, set at 0°C and stirred for 20min. Then, HgCl2 (1.2 or 1.5 eq.) was added and the solution stirred at 0°C for a further 40min and was then stirred for 48h at r.t. until the reaction had reached completion (TLC). The reaction mixture was filtered through a pad of celite in a sintered glass funnel, and washed with EtOAc. The filtrate was then washed with brine, dried over MgSO4 and the solvents removed, before further purification. |
Tags: 70291-62-2 synthesis path| 70291-62-2 SDS| 70291-62-2 COA| 70291-62-2 purity| 70291-62-2 application| 70291-62-2 NMR| 70291-62-2 COA| 70291-62-2 structure
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