Structure of 675-11-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 675-11-6 |
Formula : | C4H3F2N3 |
M.W : | 131.08 |
SMILES Code : | NC1=NC(F)=CC(F)=N1 |
MDL No. : | MFCD00233527 |
InChI Key : | KJFMZGRMRFLJQR-UHFFFAOYSA-N |
Pubchem ID : | 1201480 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 26.35 |
TPSA ? Topological Polar Surface Area: Calculated from |
51.8 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.1 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.72 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.19 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.22 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.2 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.88 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.6 |
Solubility | 3.3 mg/ml ; 0.0251 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.39 |
Solubility | 5.39 mg/ml ; 0.0411 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.82 |
Solubility | 2.0 mg/ml ; 0.0153 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.59 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.89 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In 1-methyl-pyrrolidin-2-one; methanol; water; | EXAMPLE 9 Preparation of 2-amino-6-(4-chlorophenoxy)-4-fluoropyrimidine (Variant A) STR17 2.52 g (0.038 mol) of 85% sodium hydroxide were dissolved in 50 ml of methanol, 4.9 g (0.0382 mol) of 4-chlorophenol were added, and the mixture was evaporated to dryness. The residue of salt obtained in this way was taken up in 50 ml of N-methyl-2-pyrrolidone and, at 25 C., 5.0 g (0.0382 mol) of <strong>[675-11-6]2-amino-4,6-difluoropyrimidine</strong> were added, and the mixture was stirred at 140 C. for 4 hours. After the reaction mixture had been cooled to 25 C. it was stirred into 500 ml of water, and the resulting precipitate was isolated. 7.4 g (81% of theory) of the title compound of melting point 223-226 C. were obtained in this way. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; | EXAMPLE 5 Preparation of 6-allyloxy-2-amino-4-fluoropyrimidine (Variant A) STR13 1.14 g (0.0382 mol) of 80% sodium hydride (emulsion in linseed oil) were added at 25 C. under a nitrogen atmosphere to 70 ml of allyl alcohol. To the clear solution obtained after stirring at 40 C. for 20 minutes were added 5.0 g (0.0382 mol) of <strong>[675-11-6]2-amino-4,6-difluoropyrimidine</strong>, and the mixture was then stirred at 97 C. for 1.5 hours. To work up, the excess alcohol was removed by distillation under reduced pressure, the residue was taken up in methylene chloride, and the solution was washed with water, dried over magnesium sulfate and then freed of solvent. The viscous oil obtained in this way crystallized on trituration with n-pentane. 4.6 g (71.2% of theory) of the title compound of melting point 62-66 C. were obtained after filtering off, washing with water and drying. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In propan-1-ol; water; | EXAMPLE 3 Preparation of 2-amino-4-fluoro-6-propyloxypyrimidine (Variant A) STR11 29 4 g (0.3 mol) of potassium propylate were reacted as in Example 1 with 39.3 g (0.3 mol) of <strong>[675-11-6]2-amino-4,6-difluoropyrimidine</strong> in a total of 400 ml of n-propanol. The solvent was removed from the reaction mixture under reduced pressure, and the residue was washed with petroleum ether. It was subsequently stirred in water, filtered off, washed and dried, resulting in 36.1 g (70% of theory) of the title compound of melting point 63-66 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With ammonia; In water; | (a) 2-Amino-4,6-difluoropyrimidine 69.7 g (4.1 mol) of liquid ammonia were added at -30 to -20 C. to a stirred mixture of 250 g (1.865 mol) of 2,4,6-trifluoropyrimidine and 3.3 1 of diethyl ether within 1 hour. To work up, the reaction mixture was warmed to 25 C. and the precipitate was filtered off. Washing with ether, stirring in water, renewed filtration and drying resulted in 203 g (83% of theory) of the desired product (melting point 214-216 C.). It was possible by concentrating the ether filtrate to about 1/3 of its volume to isolate a further 20 g (8% of theory) of this compound, of melting point 193-196 C., from a 1:1 mixture with the isomeric 4-amino compound. Comparative experiment (according to SU-A 547,447--1975) Under the same reaction conditions as in (a), but with addition and reaction taking place at -10 C., 100 g (0.746 mol) of 2,4,6-trifluoropyrimidine and 29.1 g (1.71 mol) of ammonia yielded 76 g (78% of theory) of the title compound of melting point 212-213 C., and from the filtrate a further 19.5 g (20% of theory) of a mixture (40:60) of the desired compound and the isomeric 4-amino compound (melting point 195-196 C.). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With potassium carbonate; In 1,4-dioxane; N,N-dimethyl-formamide; at 20℃; for 48.0h;Sealed tube; | In a sealable tube, a solution of <strong>[675-11-6]4,6-difluoropyrimidin-2-amine</strong> (1.0 g, 7.6 mmol) in 1,4-dioxane/dimethylformamide (20.0 mL, 1:1), potassium carbonate (1.6 g, 11.9 mmol) and tert-butylamine (1.7 g, 23.0 mmol) were added. The resulting reaction mixture was stirred at room temperature for 48 h. After completion, the reaction mixture was concentrated under reduced pressure. The crude material was diluted with cold water (10.0 mL) whereupon a solid formed. The solid was filtered and air dried to afford the title compound S7-2 (1.2 g, 85%) as an off-white solid. MS m/z (M+H): 185.1 |
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