Structure of 65938-77-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Batch number can be found on the product's label following the word 'Batch'.
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CAS No. : | 65938-77-4 |
Formula : | C6H8N2O2S |
M.W : | 172.20 |
SMILES Code : | CC1=CN=C(C=C1)[S](=O)(=O)N |
MDL No. : | MFCD00661363 |
InChI Key : | HXURYNQXMBRJLU-UHFFFAOYSA-N |
Pubchem ID : | 3614199 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 40.2 |
TPSA ? Topological Polar Surface Area: Calculated from |
81.43 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.89 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.11 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.12 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.96 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.06 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.22 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.31 |
Solubility | 8.35 mg/ml ; 0.0485 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.38 |
Solubility | 7.26 mg/ml ; 0.0421 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.97 |
Solubility | 1.83 mg/ml ; 0.0106 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.27 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.91 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
23% | With iodosylbenzene;iron(III)-acetylacetonate; In acetonitrile; at 20℃; for 62h;Product distribution / selectivity; | 300 mg (0.76 mmol) of (R)-3-[{5-bromo-2-(4-methylsulphanylphenylamino) pyrimidin-4-yl)}amino]-2-methylbutan-2-ol (compound 9.1), 192 mg (1.12 mmol) of 5-methyl- pyridine-2-sulphonamide, 265 mg (1.21 mmol) of iodosobenzene and 266 mg (0.76 mmol) of iron(III)acetylacetonate are weighed into a flask, and 8 ml of aceto-nitrile are added. The mixture is stirred at room temperature for 62 hours and then concentrated in a rotary evaporator. The remaining residue is purified by chromatography (dichloromethane/ethanol 8:2). 100 mg (0.18 mmol; yield: 23%) of the product are obtained. |
10% | With [bis(acetoxy)iodo]benzene; magnesium oxide;dirhodium tetraacetate; In dichloromethane; at 20℃; for 19h;Product distribution / selectivity; | Alternatively, the final productproduct can be prepared in the following way: 300 mg (0.76 mmol) of (R)-3-[{5-bromo-2-(4-methylsulphanylphenylamino) pyrimidin-4-yl)}amino]-2-methylbutan-2-ol (compound 9.1), 260 mg (1.51 mmol) of <strong>[65938-77-4]5-methyl-pyridine-2-sulphonamide</strong>, 121 mg (3.00 mmol) of magnesium oxide, 374 mg (1.16 mmol) of iodobenzene diacetate and 33 mg (0.08 mmol) of rhodium(II) acetate dimer are weighed into a flask, and 10 ml of dichloromethane are added. The mixture is stirred at room temperature for 19 hours and then concentrated in a rotary evaporator. The remaining residue is purified by chromatography (dichloromethane/ethanol 9:1). 42 mg (0.08 mmol; yield: 10%) of the product are obtained. 1H-NMR (400 MHz, DMSO): 9.70 (s, 1H), 8.37 (br, 1H), 8.09 (s, 1H), 7.91 (m, 2H), 7.69 (m, 4H), 6.06 (d, 1H), 4.83 (s, 1H), 4.04 (m, 1H), 2.98 (s, 3H), 2.29 (s, 3H), 1.12 (m, 9H). MS: 567 (ES+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
54% | With [bis(acetoxy)iodo]benzene; magnesium oxide;dirhodium tetraacetate; In dichloromethane; at 20℃; for 24h; | (RS)-S-Methyl-S-(4-nitrophenyl)-N-[(5-methyl-2-pyridyl)sulphonyl]sulphimide 879 mg (2.73 mmol) of iodosobenzene diacetate are added to a suspension of 300 mg (1.77 mmol) of 1-methylsulphanyl-4-nitrobenzene, 610 mg (3.55 mmol) of 5-methyl-2-pyridinesulphonamide, 285 mg (7.10 mmol) of magnesium oxide and 78 mg (0.18 mmol) of rhodium(II) acetate dimer in 12 ml of dichloromethane at room temperature. The mixture is stirred for 24 h and then concentrated. The resulting residue is purified by chromatography (dichloromethane/ethanol 95:5). 326 mg (0.96 mmol; yield: 54%) of the product are obtained. 1H-NMR (DMSO): 8.41 (m, 2H), 8.31 (m, 1H), 8.12 (m, 2H), 7.76 (m, 1H), 7.70 (m, 1H), 3.11 (s, 3H), 2.29 (s, 3H). MS: 340 (ES+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With 1,8-diazabicyclo[5.4.0]undec-7-ene; In acetonitrile; at 20℃; | STEP 2. N-[({2-[4-(2-ethyl-4-phenyl-1H-imidazol-1-yl)phenyl]ethyl}amino)carbonyl]-<strong>[65938-77-4]5-methyl-2-pyridinesulfonamide</strong> A mixture of phenyl 2-[4-(2-ethyl-4-phenyl-1H-imidazol-1-yl)phenyl]ethylcarbamate (203 mg, 0.50 mmol), <strong>[65938-77-4]5-methylpyridine-2-sulfonamide</strong> (86 mg, 0.50 mmol) and DBU (82 muL, 0.55 mmol) in acetonitrile (5 mL) was stirred for overnight at ambient temperature. Then, the volatile components were removed by evaporation and the residue was dissolved in dichloromethane. The organic phase was washed with water, dried (MgSO4) and concentrated. The residue was purified by TLC with dichloromethane/methanol (10:1) to afford 145 mg (60%) of the title compound as white solids: MS (ESI) m/z 490 [M+H]+, 488 [M-H]-, 1H-NMR (DMSO-d6) delta1.18 (3H, t, J=7.5 Hz), 2.37 (3H, s), 2.72-2.90 (4H, m), 3.23 (2H, q, J=6.0 Hz), 6.69 (1H, br), 7.40-7.59 (6H, m), 7.85-7.93 (4H, m), 8.24 (1H, s), 8.55 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; sodium hypochlorite; In tetrahydrofuran; | b) To a mixture of 100 ml of 25% aqueous hydrochloric acid and 250 ml of DCM was added 18 g of 5-methyl-2-thio-pyridine. While the mixture was vigorously stirred and kept at -1 0 C. 250 ml of an aqueous solution containing 13% of sodium hypochlorite was carefully added. Upon completion of the addition, stirring was continued for 10 min. The organic layer was separated. To the aqueous layer 250 ml of DCM was added and the mixture was again treated as before with a further 250 ml batch of bleach. Upon completion of the addition, the organic layer was separated. The aqueous layer was extracted five times with 200 ml DCM. The organic layers were combined, dried over MgSO4 and evaporated. The resulting oil was dissolved in 125 ml of THF and cooled to -20 C. 25 ml of saturated aqueous ammonium hydroxide solution was slowly added. The mixture was stirred over night at room temperature. Excess of ammonia was neutralised by adding hydrochloric acid and the THF was removed in vacuo. The remaining aqueous solution was extracted three times with 150 ml of ethyl acetate. The combined organic layers were dried over MgSO4 and the solvent was evaporated. The remaining solid was recrystallized from boiling ethyl acetate to yield 13.35 g of 5-methyl-2-pyridine sulfonamide in form of beige crystals. 1H-NMR(D6-DMSO, 300 MHz): 2.37(s, 3H); 7.36(s, 2H); 7.78-7.85(m, 2H); 8.53(s, 1H); LC-MS: tR=2.32 min, [M+1]+=173.04, [M-1]-=171.10. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; potassium carbonate; In methanol; water; acetone; | EXAMPLE 3 12.5 g (33.5 mmol) of 4-[4,6-dichloro-5-(2-methoxy-phenoxy)-pyrimidine-2-yl]-pyridine-2-carbonitrile and 6.06 g (35 mmol) of <strong>[65938-77-4]5-methyl-pyridine-2-sulfonamide</strong> were added to 130 ml of acetone. 15 g of potassium carbonate and 190 mg (1.6 mmol) of 1,4-diazobicyclo[2.2.2]octane were added and the suspension was stirred at 40 C. for 5 hr and at 20 C. for 15 hr. Then 50 ml of de-ionized water were added followed by dropwise addition of 50 ml of 3 N hydrochloric acid (pH of the solution=1). Acetone was removed by evaporation and the suspension was stirred for 1 hr. The solid was filtered and washed with 100 ml of water. The residue was heated (reflux) in 100 ml of methanol for 1 hr followed by cooling to 20 C. The solid was filtered and dried at 80 C., 2000 Pa for 16 hr. There were obtained 16.0 g (93% of theory) of 5-methyl-pyridine-2-sulfonic acid [6-chloro-2-(2-cyano-pyridine-4-yl)-5-(2-methoxy-phenoxy)-pyrimidine-4-yl]-amide with a HPLC purity of 90.3% (w/w). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; sec.-butyllithium; In (2S)-N-methyl-1-phenylpropan-2-amine hydrate; cyclohexane; water; | PREPARATION 4 5-Methyl-2-pyridinesulfonamide STR142 Sec-butyllithium (9.8 ml of 1.3 M in cyclohexane) and N,N,N'N'-tetramethylethylenediamine (1.8 ml, 12.2 mmol) were added to a stirred solution of 2-bromo-5-methylpyridine (2 g, 11.6 mmol) at -78 C. under a nitrogen atmosphere. After 90 min sulphur dioxide (approximately 30 ml) was condensed into the reaction mixture using a cold finger and the reaction mixture was slowly warmed to room temperature over 12 h. The reaction mixture was concentrated to dryness and the residue dissolved in ice-water. To this was added a mixture of sodium hydroxide (1.39 g, 35 mmol) and hydroxylamine sulphonic acid (3.9 g, 35 mmol) in water (20 ml). After 24 h the solution was extracted with ethyl acetate, dried (MgSO4) and concentrated. Flash column chromatography (95% dichloromethane/5% methanol) gave the product (250 mg) as a clear oil which crystallized on standing. 1 H NMR (400 MHz, CDCl3): delta=2.40 (s, 3 H), 5.20 (brs, 2 H), 7.80 (d, 1 H), 7.90 (d, 1 H), 8.50 (s, 1 H). LRMS (Thermospray): 172.8 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68% | 8-Cyclohexyl-11-methoxy-1a-((3-methyl-3,8-diazabicyclo[3.2.1]oct-8-yl)carbonyl)-1,1a,2,12b-tetrahydrocyclopropa[d]indolo[2,1-a][2]benzazepine-5-carboxylic acid TFA (400 mg, 0.61 mmol) was dissolved into THF (4 mL) and stirred under nitrogen. CDI (160 mg, 0.98 mmol) was added and the reaction mixture was heated at 60 C. for 2 h. The reaction was cooled to rt and then (0.50 mL) of the reaction solution was added to a stirring solution of <strong>[65938-77-4]5-methylpyridine-2-sulfonamide</strong> (30 mg, 0.17 mmol) in DBU (100 muL, 0.66 mmol) and THF (0.100 mL). The reaction was stirred 3 h (complete by LCMS), quenched with 1M HCl (ac) (0.75 mL) (slight exotherm was noted) and concentrated under a stream of nitrogen over 2d. The residue was dissolved into MeOH (1 mL) and purified in one injection by preparative HPLC (CH3CN/H2O with 10 mM NH4OAc) to yield 8-cyclohexyl-11-methoxy-1a-((3-methyl-3,8-diazabicyclo[3.2.1]oct-8-yl)carbonyl)-N-((5-methyl-2-pyridinyl)sulfonyl)-1,1a,2,12b-tetrahydrocyclopropa[d]indolo[2,1-a][2]benzazepine-5-carboxamide (35.9 mg, 0.051 mmol, 68% yield) as a yellow solid. The compound was isolated as a mixture of enantiomers and presents as a 1:2 mixture of rotamers or atrope isomers. 1H NMR (300 MHz, CDCl3) delta ppm 0.19-0.27 (m, 0.33H), 0.95-3.11 (m, 24.67H), 2.45 (s, 3H), 3.59 (d, J=14.6 Hz, 1H), 3.90 (s, 2H), 3.91 (s, 1H), 4.02 (d, J=14.6 Hz, 0.33H), 4.15 (d, J=14.6 Hz, 0.33H), 4.64-4.26 (m, 1.67H), 5.12 (d, J=14.6 Hz, 0.67H), 6.95-7.03 (m, 1H) 7.15 (d, J=2.6 Hz, 0.33H), 7.19 (d, J=2.6 Hz, 0.67H), 7.30 (d, J=8.4 Hz, 0.67H), 7.31 (d, J=8.8 Hz, 0.33H), 7.66-7.84 (m, 3H), 8.03-8.10 (m, 1.67H), 8.22 (s, 0.33H), 8.44 (s, 1H). LC-MS retention time: 2.19 min; m/z 706 (MH-). LC data was recorded on a Shimadzu LC-10AS liquid chromatograph equipped with a Phenomenex-Luna 10 u C18 4.6×50 mm column using a SPD-10AV UV-Vis detector at a detector wave length of 220 nM. The elution conditions employed a flow rate of 5 mL/min, a gradient of 100% solvent A/0% solvent B to 0% solvent A/100% solvent B, a gradient time of 4 min, a hold time of 1 min, and an analysis time of 5 min where solvent A was 5% acetonitrile/95% H2O/10 mM ammonium acetate and solvent B was 5% H2O/95% acetonitrile/10 mM ammonium acetate. MS data was determined using a Micromass Platform for LC in electrospray mode. |
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