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CAS No. : | 6200-60-8 | MDL No. : | MFCD01720458 |
Formula : | C8H6N2O2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | DOGXPDFZEQXZDS-UHFFFAOYSA-N |
M.W : | 162.15 | Pubchem ID : | 73142 |
Synonyms : |
|
Num. heavy atoms : | 12 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 42.15 |
TPSA : | 54.6 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.14 cm/s |
Log Po/w (iLOGP) : | 1.23 |
Log Po/w (XLOGP3) : | 1.62 |
Log Po/w (WLOGP) : | 1.03 |
Log Po/w (MLOGP) : | 0.32 |
Log Po/w (SILICOS-IT) : | 0.29 |
Consensus Log Po/w : | 0.9 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -2.35 |
Solubility : | 0.716 mg/ml ; 0.00442 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.38 |
Solubility : | 0.678 mg/ml ; 0.00418 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -1.45 |
Solubility : | 5.77 mg/ml ; 0.0356 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.53 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
48% | A mixture of imidazo[l,2-a]pyridine-3-carboxylic acid (35.0 mg; 0.21 mmol), HOBt (37.0 mg; 0.28 mmol) and EDC (53.0 mg; 0.28 mmol) in DCM/dioxane/DMF (3/2/1 ratio; 6 mL) was stirred at room temperature for about 15 minutes. Then, N-[4-(2- amino-l,l-dimethyl-ethyl)-phenyl]-3,4-dimethoxy-benzamide (100 mg; 0.30 mmol), prepared as described in 26(A), and TEA (65 uL; 0.47 mmol) were added. After stirring at room temperature for 16 hours, the solvent was removed under vacuum and the residue was taken up with DCM, which was washed sequentially with sat.NaHCO3 and water. The organic phase was dried over Na2SO4, filtered and evaporated to dryness. The crude compound was purified by crystallization from DCM/isopropyl ether (1/1) to give the title compound as a white solid (48.0 mg; 48% yield).1H NMR (300 MHz, CDC13-d) delta(ppm): 10.00 (s, 1 H), 9.39 (dt, 1 H), 8.34 (s, 1 H), 8.25 (t, 1 H), 7.65-7.75 (m, 3 H), 7.61 (dd, 1 H), 7.53 (d, 1 H), 7.36-7.48 (m, 3 H), 7.03-7.14 (m, 2 H), 3.84 (s, 3 H), 3.83 (s, 3 H), 3.49 (d, 2 H), 1.33 (s, 6 H).LCMS (RT): 1.85 min (Method G); MS (ES+) gave m/z: 473.17 (MH+). MP: 181-183 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 20℃; for 0.5h; | To a stirring suspension of <strong>[6200-60-8]imidazo[1,2-a]pyridine-3-carboxylic acid</strong> (1) (71 mg, 0.39 mmol) in anhydrous dichloromethane (2 mL) was added dropwise oxalyl chloride (173 uL, 1.98 mmol). Then, a drop of anhydrous N,N-dimethylformamide was added and the reaction mixture was stirred at room temperature for 30 minutes. The solvent was concentrated. A stirring mixture of the acid chloride and 5-(azetidin-1-yl)-3-(4-methyl-3-nitrophenyl)-1,2,4-oxadiazole (109) (85 mg, 0.29 mmol) in anhydrous pyridine (2 mL) was stirred at room temperature for 30 minutes. The crude product was purified on silica gel using 10% MeOH in dichloromethane to give N-(5-(5-(azetidin-1-yl)-1,2,4-oxadiazol-3-yl)-2-methylphenyl)imidazo[1,2-a]pyridine-3-carboxamide (F77). 1H NMR (400 MHz, CD2Cl2) delta 10.10 (s, 1H), 9.51-9.48 (m, 1H), 8.65 (s, 1H), 7.94 (d, J=1.6 Hz, 1H), 7.86-7.83 (m, 1H), 7.71 (dd, J=1.6, 7.6 Hz, 1H), 7.64-7.60 (m, 1H), 7.43 (d, J=8.0 Hz, 1H), 7.27-7.24 (m, 1H), 4.26-4.22 (m, 4H), 2.48-2.40 (m, 2H), 2.34 (s, 3H). MS m/z 374.15 (M+1)+. | |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 0 - 20℃; | To a suspension of <strong>[6200-60-8]imidazo[1,2-a]pyridine-3-carboxylic acid</strong> (1) (4.09 g, 25.3 mmol) in dichloromethane (100 mL) and DMF (0.25 mL) at 0 C. was added oxalyl chloride (4.15 mL, 48.0 mmol) dropwise over 10 minutes. The reaction was slowly warmed to room temperature and stirred until complete conversion was detected by LCMS. The reaction was subsequently reduced to dryness and suspended in dichloromethane (100 mL) and was added a solution of methyl 3-amino-4-methylbenzoate (2) (4.6 g, 27.9 mmol) in dichloromethane (100 mL) and triethylamine (7.1 mL). Contents were stirred at room temperature for 4 hours and diluted with dichloromethane (100 mL). The reaction was washed with water, saturated NaHCO3, brine, dried over magnesium sulfate, filtered and reduced to dryness. The crude solid was triturated with diethyl ether to remove excess aniline and dried to afford methyl 3-(imidazo[1,2-a]pyridine-3-carboxamido)-4-methylbenzoate (3) as a white solid. MS m/z 310.1 (M+1)+.; To a suspension of 3-(imidazo[1,2-a]pyridine-3-carboxamido)-4-methylbenzoate (3) (5.43 g, 17.6 mmol) in THF (225 ml) and MeOH (150 mL) was added LiOH 3 M (17.5 mL) and water (50 mL). The reaction was stirred at room temperature for 12 hours then reduced in volume on roto-vap to remove THF and MeOH. The mixture was diluted with water (75 mL) and neutralized with HCl (17.5 mL of a 3M solution). The resulting precipitate was filtered, washed with water and dried under vacuum to afford 3-(imidazo[1,2-a]pyridine-3-carboxamido)-4-methylbenzoic acid (4) as a white solid. 1H NMR (400 MHz, d6-DMSO) delta 10.0 (s, 1H), 9.45 (dt, J=6.8, 1.2 Hz, 1H), 8.58 (s, 1H), 7.98 (d, J=2.0 Hz, 1H), 7.79 (dt, J=9.2, 1.2 Hz, 1H), 7.76 (dd, J=8.0, 1.6 Hz, 1H), 7.52 (ddd, J=9.2, 9.2, 1.2 Hz, 1H), 7.43 (d, J=8.0 Hz, 1H), 7.17 (td, J=6.8, 1.2 Hz, 1H), 2.35 (s, 3H). MS m/z 296.1 (M+1)+. | |
With oxalyl dichloride; In dichloromethane; N,N-dimethyl-formamide; at 20℃; | Step 1 : ImidazoH ,2-a]pyridine-3-carbonyl chloride A suspension of imidazo[1 ,2-a]pyridine-3-carboxylic acid (5.270 g, 32.5 mmol) in DCM (200 ml) was treated with oxalyl chloride (3.13 ml, 35.8 mmol) followed by the addition of DMF (0.252 ml, 3.25 mmol). The reaction mixture was stirred at RT overnight. The solvent was removed in vacuo to afford the title compound as a hydrochloride salt;1 H NMR (400 MHz, DMSO-d6) delta 9.48 (1 H, d), 8.77 (1 H, s), 7.99 (2H, m), 7.56 (1 H, t) |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 0 - 20℃; for 16h; | To imidazo[1 ,2-a]pyridine-3-carboxylic acid (1.0 eq) in DCM (0.2 M) at 0 00 was added oxalyl chloride (3.0 eq, 2.0 M solution in DCM) dropwise and then 1 drop of DMF. The mixture was slowly warmed to room temperature and stirred for 16 hours. LCMS analysis of the mixture showed >95% of the desired product (appeared as methyl ester on LCMS upon reaction with MeOH). The reaction was concentrated and azeotroped with toluene (x3). The acid chloride was obtained as a pale yellow amorphous solid which was used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
< 5% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; | To a solution of <strong>[6200-60-8]imidazo[1,2-a] pyridine-3-carboxylic acid</strong> (250 mg) in DMF (7 mL), EDCI (443 mg, 1.5 equiv.), HOBt (312 mg, 1.5 equiv.), DIPEA (805 muL, 3.0 equiv.) and compound 73 (404 mg, 1.0 equiv.) were added. The resulting mixture was stirred at R.T. overnight. The reaction mixture was diluted with AcOEt (15 mL), washed with HCl 1M (2*10 mL) and water (2*10 mL). Combined aqueous layers were saturated with NaHCO3 and extracted with AcOEt (2*10 mL). The combined organic layers were washed with brine, dried over MgSO4 and concentrated under reduced pressure. Purification by flash-chromatography (MeOH 2% to 5% in CH2Cl2) followed by preparative HPLC afforded the product as a white solid (9.3 mg, yield <5%). 1H-NMR (400 MHz, DMSO): 1.11-1.79 (m, 13H, 5*CH2 + CH3); 3.33 (q, J 7.0 Hz, 2H, N-CH2); 6.81 (dd, J 1.9 Hz, J 8.1 Hz, 1H, Ar); 6.90 (d, J 2.0 Hz, 1H, Ar); 7.20 (m, 1H, Ar); 7.55 (m, 1H, Ar); 7.75-7.78 (m, 2H, Ar); 8.56 (s, 1H, Ar); 9.36 (bs, 1H, NH); 9.47 (m, 1H, Ar). N-CH signal under water peak. M/Z (M+H)+ = 407. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With thionyl chloride; In dichloromethane; for 2h;Product distribution / selectivity; | To imidazo[l,2-a]pyridine-3- carboxylic acid (194 mg, 1.20 mmol) in DCM (5 mL) was added thionyl chloride (2 mL). The reaction mixture was stirred for 2 hours and concentrated to give crude acylchloride HCl salt, to which DCE/THF (2 mL/2 mL) and 3-ethyl-l-((6-methoxypyridin-2-yl)methyl)-lH- indazol-4-amine (211 mg, 0.747 mmol) was added. The reaction mixture was heated to 70 C and stirred for 1 hour. The reaction mixture was diluted with DCM (20 mL) and washed with saturated NaHC03 aqueous solution. The organic solution was dried over Na2S04, filtered and concentrated. Silica gel chromatography (DCM/MeOH 10: 1) provided the desired product (226 mg). MS (ES+APCI) m/z = 427 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a suspension of imidazo[l,2- a]pyridine-3-carboxylic acid (45.1 mg, 0.278 mmol) in NMP (5 mL) was added 2,4,6- trichlorobenzoyl chloride (43.5 mu, 0.278 mmol) and triethylamine (38.8 mu, 0.278 mmol). The reaction mixture was stirred for 30 minutes. l-((l,5-Dimethyl-lH-pyrazol-3-yl)methyl)- 3-ethyl-lH-indazol-4-amine (50 mg, 0.186 mmol) was added to the reaction mixture, which was heated to 87 C for 3 hours. The mixture was cooled to ambient temperature, and diluted with 10% NaOH aqueous solution (5 mL) and EtOAc (20 mL). The organic phase was washed with water and brine, then concentrated under reduced pressure. The residue was triturated with Et20 to give final product (35 mg). MS (ES+APCI) m z = 414 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a suspension of imidazo[l,2- a]pyridine-3-carboxylic acid (47.6 mg, 0.294 mmol) in NMP (4 mL) was added 2,4,6- trichlorobenzoyl chloride (45.9 mu, 0.294 mmol) and triethylamine (40.9 mu, 0.294 mmol). The reaction mixture was stirred for 30 minutes. 3 -Ethyl- 1-((1 -methyl- lH-pyrazol-3- yl)methyl)-lH-indazol-4-amine (50 mg, 0.196 mmol) was added and the mixture was heated at 87 C for three hours. The mixture was cooled to ambient temperature and diluted with 10% NaOH aqueous solution (5 mL) and EtOAc (20 mL). The organic phase was washed with water and brine and concentrated under reduced pressure. The residue was triturated with Et20 to give the final product (52 mg). MS (ES+APCI) m/z = 400 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a stirred suspension of imidazo[l,2- a]pyridine-3-carboxylic acid (36.5 mg, 0.225 mmol) in dichloromethane (0.6 mL) was added N,N-dimethylformamide. Oxalyl chloride (84.5 mu, 0.169 mmol) was added and the mixture was stirred in a sealed vessel with ice cooling. The cooling was removed and the mixture was stirred for 3 hours with occasional venting to allow gases to escape. Diisopropylethylamine (21.6 mu, 0.124mmol) and 3-ethyl-l-((6-methylpyridin-2-yl)methyl)-lH-indazol-4-amine (30 mg, 0.113 mmol) were added. The mixture was stirred for 30 minutes and then concentrated under reduced pressure. The material was purified using preparative thin layer chromatography, eluting with 10% methanol in dichloromethane containing 0.5% ammonium hydroxide solution. A second purification eluting with 5% methanol in ethyl acetate containing 0.5% ammonium hydroxide solution was carried out to provide N-(3-Ethyl-l-((6- methylpyridin-2-yl)methyl)-lH-indazol-4-yl)imidazo[l,2-a]pyridine-3-carboxamide (12.5 mg). MS (APCI), positive scan, m/z = 411.3 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Imidazo[l,2-a]pyridine-3-carboxylic acid (62 mg, 0.38 mmol) was dissolved neat in thionyl chloride (112 mL, 1.5 mmol). The reaction mixture was stirred at ambient temperature for 1 hour before concentrating and drying under high vacuum for 16 hours. The resulting solid was dissolved in tetrahydrofuran (2 mL). 3 -Methyl- l-((6-methylpyridin-2- yl)methyl)-lH-indazol-4-amine (97 mg, 0.38 mmol) was added and the reaction was stirred at 70 C in a sand bath for 6 hours. The mixture was concentrated and partitioned between ethyl acetate and saturated sodium bicarbonate. The ethyl acetate layer was washed with water and brine before drying over sodium sulfate and concentrating. Preparative Thin Layer Chromatography (Silica, 1 mm) of the crude material, eluting with 10% MeOH/DCM, gave N-(3 -methyl- l-((6-methylpyridin-2-yl)methyl)-lH-indazol-4-yl)imidazo[l,2-a]pyridine-3- carboxamide (48 mg) in a band with Rf = 0.6. MS m/z 397.3 (M+l, APCI+). |
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