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Structure of 59288-43-6

Chemical Structure| 59288-43-6

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Product Details of [ 59288-43-6 ]

CAS No. :59288-43-6
Formula : C6H4N2O5
M.W : 184.11
SMILES Code : O=C(O)C1=CN=C([N+]([O-])=O)C(O)=C1
MDL No. :MFCD11044358
InChI Key :OODZZMDHMOPHHY-UHFFFAOYSA-N
Pubchem ID :18357439

Safety of [ 59288-43-6 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 59288-43-6 ] Show Less

Physicochemical Properties

Num. heavy atoms 13
Num. arom. heavy atoms 6
Fraction Csp3 0.0
Num. rotatable bonds 2
Num. H-bond acceptors 6.0
Num. H-bond donors 2.0
Molar Refractivity 42.04
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

116.24 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

0.52
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

0.74
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

0.39
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

-1.88
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-1.81
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

-0.41

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-1.66
Solubility 4.05 mg/ml ; 0.022 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.76
Solubility 0.32 mg/ml ; 0.00174 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-0.2
Solubility 115.0 mg/ml ; 0.624 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.9 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.56

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

2.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.06

Application In Synthesis of [ 59288-43-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 59288-43-6 ]

[ 59288-43-6 ] Synthesis Path-Downstream   1~14

  • 2
  • [ 59288-43-6 ]
  • [ 20443-98-5 ]
  • [ 756520-61-3 ]
YieldReaction ConditionsOperation in experiment
46% With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 4.5h; 2. 2,6-Dichlorobenzyl-6-nitro-5-[(2,6-dichlorobenzyl)oxy]nicotinate (B3): <strong>[59288-43-6]6-nitro-5-hydroxynicotinic acid</strong> (B2) (3.4 g, 18.5 mmol), 2,6-dichlorobenzyl bromide (8.88 g, 37 mmol), DIPEA (5.5 g, 42.5 mmol) were dissolved in DMF (25 mL) in a 250 mL round bottomed flask and the reaction was stirred at room temperature for 4.5 hr and then concentrated under reduced pressure. The resulting mixture was poured into ice and the filtered. The solid collected was dried under reduced pressure to give 4.25 g (46% yield) of B3. MS (APCI) (M+H)+503. 1H-NMR (DMSO-d6) delta 5.47 (s, 2H, ArCH2O), 5.71 (s, 2H, ArCH2O), 7.24-7.43 (m, 6H, Ar-H), 8.26(d, 1H, Ar-H), 8.66(d, 1H, Ar-H).
46% With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 4.5h; 2,6-Dichlorobenzyl-6-nitro-5-[(2,6-dichlorobenzyl)oxy]nicotinate (B3): <strong>[59288-43-6]6-nitro-5-hydroxynicotinic acid</strong> (B2) (3.4 g, 18.5 mmol), 2,6-dichlorobenzyl bromide (8.88 g, 37 mmol), DIPEA (5.5 g, 42.5 mmol) were dissolved in DMF (25 mL) in a 250 mL round bottomed flask and the reaction was stirred at room temperature for 4.5 hr and then concentrated under reduced pressure. The resulting mixture was pouredinto ice and the filtered. The solid collected was dried under reduced pressure to give 4.25 g (46% yield) of B3. MS (APCI) (M+H)+ 503. 1HNMR (DMSO-d6) D 5.47 (s, 2H, ArCHaO), 5.71 (s, 2H, ArCHzO), 7.24-7.43 (m, 6H, Ar-H), 8.26(d, 1H, Ar-H), 8.66(d, 1H, Ar-H).
  • 3
  • [ 27828-71-3 ]
  • [ 59288-43-6 ]
YieldReaction ConditionsOperation in experiment
91% With sulfuric acid; nitric acid; at 0℃; for 48h;Heating; At 0 C, to a solution of 5- hydroxypyridine-3-carboxylic acid (6.65 g, 47.80 mmol) in sulfuric acid (9 mL) was added HNO3 (12.60 g, 0.2 mol) dropwise. The resulting mixture was stirred for 48 h at 55 C. When the reaction was done, the reaction mixture was diluted with ice water (100 mL). The pH value of the mixture was adjusted to 5 with sodium hydroxide solution (5 M). The resulting mixture was extracted with isopropyl alcohol (200 mL x 3). The organic phases were combined and concentrated under reduced pressure to yield 5-hydroxy-6-nitropyridine-3-carboxylic acid as an yellow solid (8.00 g, 91 %).
64% With sulfuric acid; nitric acid; at 55 - 60℃; for 96h; 1. 6-Nitro-5-hydroxynicotinic acid (B2): To a solution of 5-hydroxynicotinic acid (B1) (7.0 g, 50 mmol) in concentrated H2SO4 was added 9 mL of fuming HNO3 (90%) (9 mL). The reaction mixture was stirred at 55-60 C. in a sealed tube for four days. The mixture was then poured into ice and the pH was adjusted to 3 with 50% NaOH. MgSO4 was added to saturate the aqueous mixture, which was then extracted with isopropyl alcohol (4*45 mL). After the removal of isopropyl alcohol under reduced pressure, 5.93 g (64% yield) of B2 was obtained as a yellow solid. MS (APCI), (M+H)+185. 1H-NMR (DMSO-d6) delta 8.01 (d, 1H, Ar-H), 8.41(d, 1H, Ar-H).
64% 6-Nitro-5-hydroxynicotinic acid (B2): To a solution of 5-hydroxynicotinic acid (B1) (7.0 g, 50 mmol) in concentrated H2S04 was added 9 mL of fuming HN03 (90%) (9 mL), The reaction mixture was stirred at 55-60C in a sealed tube for four days. The mixture was then poured into ice and the pH was adjusted to 3 with 50% NaOH. MgS04 was added to saturate the aqueous mixture, which was then extracted with isopropyl alcohol (4x45 mL). After the removal of isopropyl alcohol under reduced pressure, 5.93 g (64% yield) of B2 was obtained as a yellow solid. MS (APCI), (M+H)+ 185. 1HNMR (DMSO-dQ)a 8.01 (d, 1H, Ar-H), 8.41 (d, 1H, Ar-H).
With sulfuric acid; nitric acid; at 0 - 20℃; for 16h;Sealed tube; In a sealable tube, 5-hydroxypyridine-3-carboxylic acid (1.00 g, 5.95 mol) was dissolved in concentrated H2SO4 (1.34 mL). Then fuming nitric acid (1.35 mL) was added drop wise at 0-5 C and the reaction mixture brought to room temperature slowly and stirred for 16 hrs before being poured onto ice cold water. The pH was adjusted to 3 with 50% NaOH solution and then extracted with isopropyl alcohol: chloroform (1 :19, 4x45 mL). After separation of layers and removal of solvent under reduced pressure, a pale yellow solid was obtained (1.2 g), consisting of a mixture of starting material and 5-hydroxy-6- nitropyridine-3-carboxylic acid in a 2:3 ratio
43 g With sulfuric acid; nitric acid; at 20 - 30℃; for 14h; The 89.6 ml nitric acid (65% a) slowly added to 560 ml sulfuric acid (96% a) in, from the internal temperature does not exceed 30 C. Therefore, to divide at room temperature by adding 70g5-hydroxy nicotinic acid (CAS5006-66-6), and the mixture is stirred 14 hours. The mixture is poured into a large amount of ice water, and the obtained precipitate K1 leach. The filtrate is the use of aqueous sodium hydroxide solution to pH= 3, extracted with ethyl acetate 3 times. The combined organic phase is washed with water and dried with sodium sulfate. Remove the solvent in a vacuum. A residue by another K2. Merger of the two parts of the sediment, produce 43g5-hydroxy-6-nitro-pyridine-3-carboxylic acid.

  • 4
  • [ 59288-43-6 ]
  • methyl 6-amino-5-methoxypyridine-3-carboxylate [ No CAS ]
  • 5
  • [ 59288-43-6 ]
  • [ 74-88-4 ]
  • methyl 5-methoxy-6-nitropyridine-3-carboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
43% This mixture was dissolved in DMF (7 mL) and K2C03 (1.50 g, 10.9 mmol) was added.The reaction mixture was stuffed at room temperature for 15 mm, cooled to 5-10C andmethyl iodide (0.680 mL, 10.9 mmol) as a solution in DMF (3 mL) was added slowly.The reaction mixture was stuffed at room temperature for 3 more hours, then poured intoice cold water. A yellow solid precipitated, which was filtered and washed sequentiallywith water then hexanes and dried under vacuum to afford methyl 5-methoxy-6- nitropyridine-3-carboxylate (0.5 g, 43%) as a yellow solid.
8% With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 16h; Method 22 [00275] <strong>[59288-43-6]5-hydroxy-6-nitropyridine-3-carboxylic acid</strong> : At room temperature, to a solution of <strong>[59288-43-6]5-hydroxy-6-nitropyridine-3-carboxylic acid</strong> (4.80 g, 26.07 mmol) in N,N-dimethylformamide (20 mL) was added potassium carbonate (8.5 g, 61.50 mmol), then iodomethane (8.74 g, 61.58 mmol) was added slowly. The resulting mixture was stirred for 16 h at room temperature. When the reaction was done, the reaction mixture was diluted with ice water (60 mL) and extracted with ethyl acetate (100 mL x 3). The organic phases were combined, washed with brine and dried over Na2S04. The solvent was removed under reduced pressure and the residue was purified by flash chromatography eluting with EtOAc in petroleum ether (0 % to 56 % gradient) to yield methyl 5- methoxy-6-nitropyridine-3-carboxylate as an yellow solid (438 mg, 8%). MS: m/z = 213.1 [M+H]+.
  • 6
  • [ 59288-43-6 ]
  • methyl 6-[(1-cyclopentyl-2-ethyl-1,2,3,4-tetrahydro-4-methyl-3-oxopyrido[3,4-b]pyrazin-7-yl)amino]-5-methoxypyridin-3-carboxylate [ No CAS ]
  • 7
  • [ 59288-43-6 ]
  • 6-[(1-cyclopentyl-2-ethyl-1,2,3,4-tetrahydro-4-methyl-3-oxopyrido[3,4-b]pyrazin-7-yl)amino]-5-methoxypyridin-3-carboxylic acid [ No CAS ]
  • 8
  • [ 59288-43-6 ]
  • 6-[1-cyclopentyl-2,4-dimethyl-3-oxo-1,2,3,4-tetrahydropyrido[3,4-b]pyrazin-7-yl]amino}-N-cyclopropyl-5-methoxypyridine-3-carboxamide [ No CAS ]
  • 9
  • [ 59288-43-6 ]
  • 6-[(2R)-1-cyclopentyl-2,4-dimethyl-3-oxo-1,2,3,4-tetrahydropyrido[3,4-b]pyrazin-7-yl]amino}-N-cyclopropyl-5-methoxypyridine-3-carboxamide [ No CAS ]
  • 10
  • [ 59288-43-6 ]
  • methyl 6-[(1-cyclopentyl-2,4-dimethyl-3-oxo-1,2,3,4-tetrahydropyrido[3,4-b]pyrazin-7-yl)amino]-5-methoxypyridine-3-carboxylate [ No CAS ]
  • 11
  • [ 59288-43-6 ]
  • 6-[(1-cyclopentyl-2,4-dimethyl-3-oxo-1,2,3,4-tetrahydropyrido[3,4-b]pyrazin-7-yl)amino]-5-methoxypyridine-3-carboxylic acid [ No CAS ]
  • 12
  • [ 67-56-1 ]
  • [ 59288-43-6 ]
  • methyl 5-methoxy-6-nitropyridine-3-carboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
27 g With diazomethyl-trimethyl-silane; In toluene; at 0℃; for 14h; In 0 C, the 847 ml (diazo methyl) trimethyl silane slowly into 78g intermediate 1.2 in 780 ml methanol and 780 ml toluene in solution, and the mixture is stirred 14 hours. Added to the ethyl acetate and saturated sodium bicarbonate solution. Removing the organic phase, and the extraction with ethyl acetate the aqueous phase 2 times. The combined organic phase is washed with saturated sodium chloride solution, dried by sodium sulfate. The chromatography on silica gel (hexane/ethyl acetate 8:2) get 27g5-methoxy-6-nitro-pyridine-3-carboxylic acid methyl ester.
  • 13
  • [ 59288-43-6 ]
  • C9H11N3O4 [ No CAS ]
  • 14
  • [ 59288-43-6 ]
  • C9H13N3O2 [ No CAS ]
 

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Technical Information

Categories

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