Structure of 59288-43-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 59288-43-6 |
Formula : | C6H4N2O5 |
M.W : | 184.11 |
SMILES Code : | O=C(O)C1=CN=C([N+]([O-])=O)C(O)=C1 |
MDL No. : | MFCD11044358 |
InChI Key : | OODZZMDHMOPHHY-UHFFFAOYSA-N |
Pubchem ID : | 18357439 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 6.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 42.04 |
TPSA ? Topological Polar Surface Area: Calculated from |
116.24 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.52 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.74 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.39 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-1.88 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-1.81 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.41 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.66 |
Solubility | 4.05 mg/ml ; 0.022 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.76 |
Solubility | 0.32 mg/ml ; 0.00174 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.2 |
Solubility | 115.0 mg/ml ; 0.624 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.9 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.06 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
46% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 4.5h; | 2. 2,6-Dichlorobenzyl-6-nitro-5-[(2,6-dichlorobenzyl)oxy]nicotinate (B3): <strong>[59288-43-6]6-nitro-5-hydroxynicotinic acid</strong> (B2) (3.4 g, 18.5 mmol), 2,6-dichlorobenzyl bromide (8.88 g, 37 mmol), DIPEA (5.5 g, 42.5 mmol) were dissolved in DMF (25 mL) in a 250 mL round bottomed flask and the reaction was stirred at room temperature for 4.5 hr and then concentrated under reduced pressure. The resulting mixture was poured into ice and the filtered. The solid collected was dried under reduced pressure to give 4.25 g (46% yield) of B3. MS (APCI) (M+H)+503. 1H-NMR (DMSO-d6) delta 5.47 (s, 2H, ArCH2O), 5.71 (s, 2H, ArCH2O), 7.24-7.43 (m, 6H, Ar-H), 8.26(d, 1H, Ar-H), 8.66(d, 1H, Ar-H). |
46% | With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; for 4.5h; | 2,6-Dichlorobenzyl-6-nitro-5-[(2,6-dichlorobenzyl)oxy]nicotinate (B3): <strong>[59288-43-6]6-nitro-5-hydroxynicotinic acid</strong> (B2) (3.4 g, 18.5 mmol), 2,6-dichlorobenzyl bromide (8.88 g, 37 mmol), DIPEA (5.5 g, 42.5 mmol) were dissolved in DMF (25 mL) in a 250 mL round bottomed flask and the reaction was stirred at room temperature for 4.5 hr and then concentrated under reduced pressure. The resulting mixture was pouredinto ice and the filtered. The solid collected was dried under reduced pressure to give 4.25 g (46% yield) of B3. MS (APCI) (M+H)+ 503. 1HNMR (DMSO-d6) D 5.47 (s, 2H, ArCHaO), 5.71 (s, 2H, ArCHzO), 7.24-7.43 (m, 6H, Ar-H), 8.26(d, 1H, Ar-H), 8.66(d, 1H, Ar-H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | With sulfuric acid; nitric acid; at 0℃; for 48h;Heating; | At 0 C, to a solution of 5- hydroxypyridine-3-carboxylic acid (6.65 g, 47.80 mmol) in sulfuric acid (9 mL) was added HNO3 (12.60 g, 0.2 mol) dropwise. The resulting mixture was stirred for 48 h at 55 C. When the reaction was done, the reaction mixture was diluted with ice water (100 mL). The pH value of the mixture was adjusted to 5 with sodium hydroxide solution (5 M). The resulting mixture was extracted with isopropyl alcohol (200 mL x 3). The organic phases were combined and concentrated under reduced pressure to yield 5-hydroxy-6-nitropyridine-3-carboxylic acid as an yellow solid (8.00 g, 91 %). |
64% | With sulfuric acid; nitric acid; at 55 - 60℃; for 96h; | 1. 6-Nitro-5-hydroxynicotinic acid (B2): To a solution of 5-hydroxynicotinic acid (B1) (7.0 g, 50 mmol) in concentrated H2SO4 was added 9 mL of fuming HNO3 (90%) (9 mL). The reaction mixture was stirred at 55-60 C. in a sealed tube for four days. The mixture was then poured into ice and the pH was adjusted to 3 with 50% NaOH. MgSO4 was added to saturate the aqueous mixture, which was then extracted with isopropyl alcohol (4*45 mL). After the removal of isopropyl alcohol under reduced pressure, 5.93 g (64% yield) of B2 was obtained as a yellow solid. MS (APCI), (M+H)+185. 1H-NMR (DMSO-d6) delta 8.01 (d, 1H, Ar-H), 8.41(d, 1H, Ar-H). |
64% | 6-Nitro-5-hydroxynicotinic acid (B2): To a solution of 5-hydroxynicotinic acid (B1) (7.0 g, 50 mmol) in concentrated H2S04 was added 9 mL of fuming HN03 (90%) (9 mL), The reaction mixture was stirred at 55-60C in a sealed tube for four days. The mixture was then poured into ice and the pH was adjusted to 3 with 50% NaOH. MgS04 was added to saturate the aqueous mixture, which was then extracted with isopropyl alcohol (4x45 mL). After the removal of isopropyl alcohol under reduced pressure, 5.93 g (64% yield) of B2 was obtained as a yellow solid. MS (APCI), (M+H)+ 185. 1HNMR (DMSO-dQ)a 8.01 (d, 1H, Ar-H), 8.41 (d, 1H, Ar-H). |
With sulfuric acid; nitric acid; at 0 - 20℃; for 16h;Sealed tube; | In a sealable tube, 5-hydroxypyridine-3-carboxylic acid (1.00 g, 5.95 mol) was dissolved in concentrated H2SO4 (1.34 mL). Then fuming nitric acid (1.35 mL) was added drop wise at 0-5 C and the reaction mixture brought to room temperature slowly and stirred for 16 hrs before being poured onto ice cold water. The pH was adjusted to 3 with 50% NaOH solution and then extracted with isopropyl alcohol: chloroform (1 :19, 4x45 mL). After separation of layers and removal of solvent under reduced pressure, a pale yellow solid was obtained (1.2 g), consisting of a mixture of starting material and 5-hydroxy-6- nitropyridine-3-carboxylic acid in a 2:3 ratio | |
43 g | With sulfuric acid; nitric acid; at 20 - 30℃; for 14h; | The 89.6 ml nitric acid (65% a) slowly added to 560 ml sulfuric acid (96% a) in, from the internal temperature does not exceed 30 C. Therefore, to divide at room temperature by adding 70g5-hydroxy nicotinic acid (CAS5006-66-6), and the mixture is stirred 14 hours. The mixture is poured into a large amount of ice water, and the obtained precipitate K1 leach. The filtrate is the use of aqueous sodium hydroxide solution to pH= 3, extracted with ethyl acetate 3 times. The combined organic phase is washed with water and dried with sodium sulfate. Remove the solvent in a vacuum. A residue by another K2. Merger of the two parts of the sediment, produce 43g5-hydroxy-6-nitro-pyridine-3-carboxylic acid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43% | This mixture was dissolved in DMF (7 mL) and K2C03 (1.50 g, 10.9 mmol) was added.The reaction mixture was stuffed at room temperature for 15 mm, cooled to 5-10C andmethyl iodide (0.680 mL, 10.9 mmol) as a solution in DMF (3 mL) was added slowly.The reaction mixture was stuffed at room temperature for 3 more hours, then poured intoice cold water. A yellow solid precipitated, which was filtered and washed sequentiallywith water then hexanes and dried under vacuum to afford methyl 5-methoxy-6- nitropyridine-3-carboxylate (0.5 g, 43%) as a yellow solid. | |
8% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 16h; | Method 22 [00275] <strong>[59288-43-6]5-hydroxy-6-nitropyridine-3-carboxylic acid</strong> : At room temperature, to a solution of <strong>[59288-43-6]5-hydroxy-6-nitropyridine-3-carboxylic acid</strong> (4.80 g, 26.07 mmol) in N,N-dimethylformamide (20 mL) was added potassium carbonate (8.5 g, 61.50 mmol), then iodomethane (8.74 g, 61.58 mmol) was added slowly. The resulting mixture was stirred for 16 h at room temperature. When the reaction was done, the reaction mixture was diluted with ice water (60 mL) and extracted with ethyl acetate (100 mL x 3). The organic phases were combined, washed with brine and dried over Na2S04. The solvent was removed under reduced pressure and the residue was purified by flash chromatography eluting with EtOAc in petroleum ether (0 % to 56 % gradient) to yield methyl 5- methoxy-6-nitropyridine-3-carboxylate as an yellow solid (438 mg, 8%). MS: m/z = 213.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
27 g | With diazomethyl-trimethyl-silane; In toluene; at 0℃; for 14h; | In 0 C, the 847 ml (diazo methyl) trimethyl silane slowly into 78g intermediate 1.2 in 780 ml methanol and 780 ml toluene in solution, and the mixture is stirred 14 hours. Added to the ethyl acetate and saturated sodium bicarbonate solution. Removing the organic phase, and the extraction with ethyl acetate the aqueous phase 2 times. The combined organic phase is washed with saturated sodium chloride solution, dried by sodium sulfate. The chromatography on silica gel (hexane/ethyl acetate 8:2) get 27g5-methoxy-6-nitro-pyridine-3-carboxylic acid methyl ester. |
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