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Structure of 58042-39-0
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
4.5
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CAS No. : | 58042-39-0 |
Formula : | C9H13NO3S |
M.W : | 215.27 |
SMILES Code : | O=S(C1=C(C)C=C(C)C=C1C)(NO)=O |
MDL No. : | MFCD16309113 |
InChI Key : | RRPKGUUYTHFUPN-UHFFFAOYSA-N |
Pubchem ID : | 11009332 |
GHS Pictogram: |
![]() ![]() |
Signal Word: | Danger |
Hazard Statements: | H302+H312+H332-H315-H319-H228 |
Precautionary Statements: | P261-P210-P264-P280-P370+P378-P302+P352+P312 |
Class: | 4.1 |
UN#: | 1325 |
Packing Group: | Ⅲ |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.33 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 53.16 |
TPSA ? Topological Polar Surface Area: Calculated from |
74.78 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.57 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.49 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.36 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.25 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.81 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.5 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.3 |
Solubility | 1.08 mg/ml ; 0.00503 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.67 |
Solubility | 0.463 mg/ml ; 0.00215 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.97 |
Solubility | 0.232 mg/ml ; 0.00108 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.56 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.41 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; for 0.5h; | [0194] To a solution of 2-(1-butynyl)pyridine (12.8 g) dissolved in dichloromethane (60 mL) was added a solution of <strong>[58042-39-0]O-<strong>[58042-39-0]mesitylenesulfonylhydroxylamine</strong></strong> (Reference; Synthesis, 1997, 1) (20 g) in dichloromethane (132 mL) while cooling with ice, and the reaction mixture was stirred for 30 minutes. Diethyl ether (2 L) was added to the reaction mixture to precipitate crystals, which were filtered off and then dried under reduced pressure to afford a crude product of N-amino-2-(1-butynyl)pyridinium mesitylenesulfonate (12.6 g) as colorless crystals. [0195] A portion (6.1 g) of the obtained crude product of N-amino-2-(1-butynyl)pyridinium mesitylenesulfonate was dissolved in tetrahydrofuran (600 mL), and then potassium tert-butoxide (3.55 g) was added thereto at room temperature and the reaction mixture was vigorously stirred for 30 minutes. After adding ice water to the obtained reaction mixture, extraction was performed with ethyl acetate. After re-extraction of the aqueous layer with ethyl acetate and the insoluble residue was filtered with celite, the organic extracts were combined and washed with brine. The obtained organic extract was dried over anhydrous magnesium sulfate and filtered, the solvent was evaporated under reduced pressure, the residue was purified by silica gel column chromatography and the title compound (0.63 g) was obtained as a light yellow oil from the n-hexane:ethyl acetate (10:1) fraction. [0196] 1H NMR (400 MHz, CDCl3) delta 1.36 (t, J=7.6 Hz, 3H), 2.86 (q, J=7.6 Hz, 2H), 6,30 (s, 1H), 6.65 (ddd, J=1.6, 6.8, 6.8 Hz, 1H), 7.04 (ddd, J=1.2, 6.8, 8.8 Hz, 1H), 7.41 (ddd, J=1.2, 1.2, 8.8 Hz, 1H), 8.37 (ddd, J=1.2, 1.2, 6.8 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; for 0.5h; | [0239] To a solution of 2-(3-methoxy-1-propynyl)pyridine (13.2 g) dissolved in dichloromethane (50 mL) was added a solution of <strong>[58042-39-0]O-<strong>[58042-39-0]mesitylenesulfonylhydroxylamine</strong></strong> (Reference; Synthesis, 1997, 1) (21 g) in dichloromethane (80 mL) dropwise while cooling with ice, and the reaction mixture was stirred for 30 minutes. Diethyl ether (1 L) was added to the obtained reaction mixture to precipitate crystals, which were collected by filtration and dried under reduced pressure to afford a crude product of 1-amino-2-(3-methoxy-1-propynyl)pyridinium 2,4,6-trimethyl-1-benzenesulfonate as ecru crystals (27.1 g). [0240] To a solution of the obtained crude product of 1-amino-2-(3-methoxy-1-propynyl)pyridinium 2,4,6-trimethyl-1-benzenesulfonate (27.1 g) dissolved in methanol (100 mL) was added sodium methoxide (28% methanol solution; 14.3 mL) dropwise while cooling with ice, and the reaction mixture was stirred for 20 minutes at room temperature. After adding ice water to the obtained reaction mixture, the methanol was evaporated under reduced pressure, water was added to the residue and extraction was performed 3 times with ethyl acetate. The organic extracts were combined, washed with brine, dried over anhydrous magnesium sulfate and filtered, and the solvent was evaporated under reduced pressure. The residue was purified by silica gel column chromatography and the title compound (3.54 g) was obtained as a light orange oil from the n-hexane:ethyl acetate (5:1) fraction. [0241] 1H NMR (400 MHz, CDCl3) delta 3.47 (s, 3H), 4.68 (s, 2H), 6.50 (s, 1H), 6.70-6.75 (m, 1H), 7.06-7.11 (m, 1H), 7.47-7.50 (m, 1H), 8.40-8.43 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | With potassium carbonate; In dichloromethane; water; N,N-dimethyl-formamide; | EXAMPLE 14 Ethyl 1-Amino-6,7-difluoro-8-acetoxymethyl-1,4-dihydro-4-oxoquinoline-3-carboxylate (97): 10.7 g (32.9 mmol) of ethyl 6,7-difluoro-4-hydroxy-8-acetoxymethylquinoline-3-carboxylate and 14.2 g (65.8 mmol) of anhydrous potassium carbonate were added to 130 ml of N,N-dimethylformamide, and the solution was stirred at room temperature for 4 hours. 14 g (NET 8.97 g, 49 mmol) of mesitylenesulfonylhydroxyamine was dissolved in 100 ml of methylene chloride, and after drying over sodium sulfate, while cooling on ice, this solution was dropped to the previous solution through 20 minutes. Then, the obtained solution was left overnight as it was. To this solution, 100 ml of water was added, and the solution was stirred at room temperature for 1 hour. The solution was extracted with methylene chloride, and the organic layer was washed. After drying over sodium sulfate, the solvent was removed under reduced pressure and ether was added to the crystal residue. The crystals were filtered off and washed with ether to obtain 6.4 g of the subject compound (97) in a 57% yield. The results of the analysis of this compound were as follows: Colorless needles: Melting point: 217-221 C. (decomp.) 1 H-NMR (DMSO-d6): 1.28 (t, J=7.3 Hz, 3H), 2.05 (s, 3H), 4.25 (q, J=7.3 Hz, 2H), 5.74 (s, 2H), 6.59 (brs, 2H), 8.15 (dd, J=9.2 Hz, 10.3 Hz, 1H), 8.59 (s, 1H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
55% | In dichloromethane; water; | SYNTHESIS EXAMPLE 2 1-Amino-5-bromouracil After the silylation of 5-bromouracil conducted in the same manner as in Synthesis Example 1, 8.8 g (26 mmole) of 5-bromo-2,4-ditrimethylsilyloxypyrimidine distilled and purified was dissolved in 50 ml of dichloromethane. To the solution was added 6.7 g (31 mmole) of <strong>[58042-39-0]MSH</strong> under ice-cooling, and the mixture was reacted with stirring at room temperature for 4 hours. After reaction, the reaction solution was concentrated under reduced pressure. To the residue were added distilled water (200 ml) and subsequently 2N-sodium hydroxide to adjust the pH to 6.0, and the solution was concentrated under reduced pressure. The crude product thus obtained was collected by filtration and recrystallized from 50% ethanol to give 3 g (yield, 55%) of crystalline 1-amino-5-bromouracil. M.P.: 214-215 C. Elementary analysis for C4 H4 N3 O2 Br; |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dichloromethane; water; | SYNTHESIS EXAMPLE 1 1-Amino-5-fluorouracil 5-Fluorouracil was silylated as usual with hexamethyldisilazane, and then 8.8 g (32 mmole) of 2,4-ditrimethylsilyloxy-5-fluoropyrimidine thus obtained, distilled and purified was dissolved in dichloromethane (48 ml). To the solution was added 7.5 g (35 mmole) of <strong>[58042-39-0]mesitylenesulfonylhydroxylamine</strong> (<strong>[58042-39-0]MSH</strong>) under ice-cooling, and the mixture was reacted with stirring at room temperature for 4 hours. After reaction, the reaction solution was concentrated under reduced pressure. Distilled water (200 ml) was added to the residue, and oily impurities were extracted with chloroform (50 ml) from the mixture. The aqueous phase was neutralized with a weakly basic resin and then concentrated to dryness under reduced pressure. The crude crystal thus obtained was purified by sublimation under the conditions of 150 C. and 5 mmHg to give 2.9 g (yield, 62%) of 1-amino-5-fluorouracil. The product was further recrystallized from 50% ethanol to give colorless needle crystals. M.P. 196-199 C. (lit. 205-207 C.) Elementary analysis for C4 H4 N3 O2 F: |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With sodium hydroxide; In dichloromethane; | IR Spectrum: =NH at 3290cm-1; -COOCH3 at 1730cm-1; and xanthone carbonyl at 1665cm-1. In another method, 108 mg (0.5 mmole) of O-mesitylene sulfonyl hydroxylamine were added to a solution of 100 mg (0.25 mmole) of methyl 7-(methylsulfinyl)-5-(n-pentyloxy)-xanthone-2-carboxylate in 10 ml of dichloromethane and the solution was stirred at room temperature for 2 days after which only a trace of sulfoxide remained. The mixture was poured into 25 ml of 10% sodium hydroxide solution and after stirring for 10 minutes, the organic layer was removed. The aqueous layer was extracted twice with dichloromethane and the combined extracts were dried over magnesium sulfate and evaporated to dryness to obtain an oil residue which was triturated with ethyl acetate to obtain 51 mg of methyl 7-(S-methylsulfonimidoyl)-5-(n-pentyloxy)-xanthone-2-carboxylate as white crystals. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With dmap; hydroxylamine hydrochloride; In pyridine; at 20.0℃; for 0.08333330000000001h;Cooling with ice; | General procedure: To a mixture of hydroxylamine hydrochloride (2 equiv.) and DMAP (2 equiv.) in pyridine (20 mL) was added a portion of arylsulfonyl chloride (1 equiv.) on an ice-bath. Then, the mixture was stirred for 5 min at room temperature. The resulting suspension was poured into AcOEt (100 mL) and 1 N HCl aq. (100 mL). The AcOEt layer was separated, washed with brine (100 mL), dried over Na2SO4, filtered and concentrated. The crude product was purified by flash column chromatography under one of the gradient conditions indicated below, and recrystallized from Et2O/n-hexane to give N-hydroxyarylsulfonamide derivatives. |
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