Structure of 5650-52-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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Batch number can be found on the product's label following the word 'Batch'.
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CAS No. : | 5650-52-2 |
Formula : | C7H6OS |
M.W : | 138.19 |
SMILES Code : | C1=CSC2=C1CCC2=O |
MDL No. : | MFCD03426936 |
InChI Key : | QHZITEHQKWPDJE-UHFFFAOYSA-N |
Pubchem ID : | 315614 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.29 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 37.37 |
TPSA ? Topological Polar Surface Area: Calculated from |
45.31 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.6 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.68 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.88 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.1 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.5 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.95 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.17 |
Solubility | 0.942 mg/ml ; 0.00682 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.25 |
Solubility | 0.784 mg/ml ; 0.00567 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.36 |
Solubility | 0.609 mg/ml ; 0.00441 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.95 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.14 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.45 g | With aluminum (III) chloride; In 1,2-dichloro-ethane; at 25℃;Reflux; | Synthesis of 3: A chloroform solution of 2 (2.00 g, 12.8 mmol) in the presence of a catalytic amount of DMF (0.05 mL) was treated dropwise with thionyl chloride (1.86 mL, 25.6 mmol) under a N2 atmosphere at 25 C. The mixture was heated under reflux for 2 hours. The resulting dark orange solution was cooled, and concentrated in vacuo to give a brown oil. A 1,2-dichloroethane (DCE) solution of the carboxylic acid chloride was added dropwise to a suspension of AlCl3 (1.71 g, 12.8 mmol) in DCE at 25 C. The mixture was stirred overnight at 25 C., then heated under reflux for 2 hours, and afterwards poured into an aqueous solution of HCl (5%). The aqueous phase was extracted with CH2Cl2, dried over Na2SO4, and evaporated. The residue was purified with a short silica pad (CH2Cl2) to afford cyclopenta[b]thiophen-6-one 3 as a white solid upon standing (1.45 g, yield: 82%). 1H NMR (400 MHz, CDCl3): delta (ppm)=2.98-3.00 (m, 2H), 3.02-3.04 (m, 2H), 7.05 (d, J=4.8 Hz, 1H), 7.89 (d, J=4.8 Hz, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30% | With methanesulfonic acid; phosphorus pentoxide; at 20℃; for 1h; | To a suspension of P2O5 (25.4 g, 179.0 mmol) in methanesulfonic acid (100 mL) was added 3-(thiophen-3-yl)propanoic acid (5.0 g, 32.0 mmol) and the reaction was stirred at room temperature for 1 h. At completion, the reaction was concentrated and the residue was purified by flash chromatography (20-30% EtOAc/hexane eluent) to give 4H-cyclopenta[b]thiophen-6(5H)-one (1.34 g, 30% yield) as a brown solid. 1H NMR (300 MHz, MeOH) delta ppm 8.14 (d, J=4.8 Hz, 1H), 7.17 (d, J=4.8 Hz, 1H), 2.94-3.15 (m, 4H); MS (EI) m/z=139.2 [M+1]+. |
0.41 g | With phosphorus pentoxide; In methanesulfonic acid; at 20℃; for 1h; | Step iii: 4H-cyclopentarblthiophen-6(5H)-one To a 50 mL round bottom flask, were added phosphorous pentoxide (8.5 g, 0.0299 mol) and methanesulfonic acid (17 mL). To the same flask, 3-(thiophen-3-yl)propanoic acid (0.85 g, 0.0054 mol) was added. The reaction mixture was stirred at RT for 1 h. The reaction mixture was quenched with ice cold water and extracted with ethyl acetate. The organic layer was separated, washed with brine, dried over anhydrous sodium sulfate. The solvent was evaporated under reduced pressure to get crude product. The crude product was purified by flash column chromatography using 30 % ethyl acetate in hexane to get the title compound [0.41 g, 55 %]. LC-MS: 139.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
71% | Preparation 3; 5,6-Dihydro-4H-thieno[2,3-c]pyridin-7-one; Prepare the title compound by essentially following procedures as found in Aparajithan, K.; Thompson, A. C; Sam, J. J. Heterocyclic. Chem. 1966, 3, 466. Dissolve <strong>[5650-52-2]4,5-dihydro-cyclopenta[b]thiophen-6-one</strong> (Bonini, B. F.; et. al. Eur. J. Org.Chem. 2004, 4442 and references cited therein) (0.658 g, 4.77 mmol) in MeOH (50 mL), and add hydroxylamine hydrochloride (0.365 g, 5.25 mmol) and NaOAc (2.35 g, 28.62 mmol). Stir the reaction at RT overnight. Remove the organic solvent in vacuo, and treat the residue with EtOAc (60 mL). Filter through silica gel, wash with EtOAc, and concentrate. Treat the residue with PPA (30 g), heating to 130 0C in an oil bath and with occasional stirring over 30 min. Allow the reaction to cool to RT and pour into ice water (100 mL). Extract with CH2Cl2 (3 x 150 mL). Wash the combined organic layers with 0.1 M NaOH (100 mL), dry over Na2SO4 and concentrate. Purify the material by chromatography, eluting with 75%EtOAc/hexanes to give 0.521 g (71%) of the title compound. MS/ES m/z 154.1 [M+H]+. | |
71% | With hydroxylamine hydrochloride; sodium acetate; In methanol; at 20℃;Product distribution / selectivity; | Preparation 19; 5,6-Dihydro-4H-thieno[2,3-c]pyridin-7-one; Prepare the title compound by essentially following procedures as found in Aparajithan, K.; Thompson, A. C; Sam, J. J. Heterocyclic. Chem. 1966, 3, 466. <n="34"/>Dissolve <strong>[5650-52-2]4,5-dihydro-cyclopenta[b]thiophen-6-one</strong> (Bonini, B. F.; et. al. Eur. J. Org. Chem. 2004, 4442 and references cited therein) (0.658 g, 4.77 mmol) in MeOH (50 mL), and add hydroxylamine hydrochloride (0.365 g, 5.25 mmol) and NaOAc (2.35 g, 28.62 mmol). Stir the reaction at RT overnight. Remove the organic solvent in vacuo, and treat the residue with EtOAc (60 mL). Filter through silica gel, wash with EtOAc, and concentrate. Treat the residue with PPA (30 g), heating to 130 0C in an oil bath and with occasional stirring over 30 min. Allow the reaction to cool to RT and pour into ice water (100 mL). Extract with CH2CI2 (3 x 150 mL). Wash the combined organic layers with 0.1 M NaOH (100 mL), dry over Na2SO4 and concentrate. Purify the material by chromatography, eluting with 75%EtOAc/hexanes to give the title compound (0.521 g, 71%). MS/ES m/z 154.1 [M+H]+ |
55% | A solution of <strong>[5650-52-2]4H-cyclopenta[b]thiophen-6(5H)-one</strong> (1.34 g, 9.7 mmol), hydroxylamine HCl (1.45 g, 20.8 mmol) and NaOAc (7.3 g, 89.0 mmol) in MeOH (150 mL) was stirred overnight at room temperature. The reaction was then concentrated under reduced pressure, taken up in EtOAc (100 mL) and filtered over a plug of silica gel, eluting with EtOAc. The filtrate was concentrated, taken up in polyphosphoric acid (100 g) and heated for 2 h at 130 C. Upon completion, the reaction was quenched by pouring over ice water (100 mL). The aqueous mixture was extracted with DCM (2×100 mL) and the combined extracts were washed with 0.1 M NaOH (100 mL), dried over Na2SO4, then filtered and concentrated. 5,6-dihydrothieno[2,3-c]pyridin-7(4H)-one (837 mg, 55% yield) was isolated as a white solid after purification by flash chromatography over silica gel (20-30% EtOAc/hexane eluent). 1H NMR (300 MHz, MeOH) delta ppm 7.69 (d, J=5.0 Hz, 1H), 7.06 (d, J=5.0 Hz, 1H), 3.57 (t, J=7.1 Hz, 2 H), 2.94 (t, J=7.1 Hz, 2H); MS (EI) m/z=154.2 [M+1]+. |
Step iv: 5,6-dihydrothieno[2,3-clpyridin-7(4H)-one To a 100 mL round bottom flask, were added <strong>[5650-52-2]4H-cyclopenta[b]thiophen-6(5H)-one</strong> (0.4 g, 0.0029 mol) and methanol (30 mL). To the same flask, hydroxylamine hydrochloride (0.22 g, 0.003 mol) and sodium acetate (1.4 g, 0.017 mol) were added. The reaction mixture was stirred at RT for 12 h. The volatiles were evaporated under reduced pressure to get residue. The residue was stirred with ethyl acetate and filtered through a pad of silica gel. The filtrate was evaporated under reduced pressure to get residue. The residue was treated with polyphosphoric acid ( 18 g) at 130 C for 30 min, with occasional stirring. The reaction mixture was cooled to RT, poured onto ice cold water and extracted with dichloromethane. The organic layer was separated, washed with aqueous 0.1 M sodium hydroxide followed by brine and dried over anhydrous sodium sulfate. The organic layer was evaporated under reduced pressure to get crude product [0.25 g, 57 %]. The crude product was used in next step without any further purification. LC-MS: 154.0 [M+H]+. |