Structure of 52854-14-5
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 52854-14-5 |
Formula : | C5H4ClN3O3 |
M.W : | 189.56 |
SMILES Code : | O=[N+](C1=C(OC)N=CN=C1Cl)[O-] |
MDL No. : | MFCD00623055 |
InChI Key : | YZTJXHWQWCLEJX-UHFFFAOYSA-N |
Pubchem ID : | 252204 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.2 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 42.36 |
TPSA ? Topological Polar Surface Area: Calculated from |
80.83 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.22 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.63 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.05 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.11 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.51 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.7 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.28 |
Solubility | 0.994 mg/ml ; 0.00525 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.94 |
Solubility | 0.218 mg/ml ; 0.00115 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.78 |
Solubility | 3.15 mg/ml ; 0.0166 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.3 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.1 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | In methanol; at 0℃; for 2.0h; | Sodium methoxide (2.70 g, 50.0 mmol) was added portionwise over 10 min to a 0C suspension OF 4, 6-DICHLORO-5-NITROPYRIMIDINE (4.85 g, 25.0 mmol) in methanol (90 ml). On complete addition the mixture was stirred at 0C for 2 h. The precipitate was filtered and the filtrate evaporated. The residue was suspended in isohexane and filtered. The filtrate was evaporated and the residue purified by flash column chromatography on silica, eluting with 5% ethyl acetate in isohexane. Collecting appropriate fractions gave 4-chloro-6-methoxy-5- nitropyrimidine (3.50 g, 74%) as a white solid |
40% | In methanol; at 0℃; for 4.0h; | a) 4-Chloro-6-methoxy-5-nitropyrimidine Sodium methoxide (2.94 g, 54.4 mmol) was added portionwise to a cooled (ice-bath) stirred suspension of 4,6-dichloro-5-nitropyrimidine (5.00 g, 25.8 mmol) in anhydrous methanol (90 mL). After 4 hours stirring at 0 C the mixture was filtered and the filtrate was concentrated in vacuo. The mixture was suspended in hexane, refiltered and the filtrate was concentrate to give an oil which was purified by by flash chromatography (5:1 hexanes/ethyl acetate) to give the title compound (1.97 g, 40%) as a yellow solid. LRMS (m/z): 190 (M+1)+. 1H NMR delta (300 MHz, CDCl3): 4.19 (s, 3H), 8.57 (s, 1H). |
40% | In methanol; at 0℃; for 4.0h;Cooling with ice; | a) 4-Chloro-6-methoxy-5-nitropyrimidineSodium methoxide (2.94 g, 54.4 mmol) was added portion wise to a cooled (ice-bath) stirred suspension of 4,6-dichloro-5-nitropyrimidine (5.00 g, 25.8 mmol) in anhydrous methanol (90 mL). After 4 hours stirring at 0 C the mixture was filtered and the filtrate was concentrated in vacuo. The mixture was suspended in hexane, refiltered and the filtrate was concentrate to give an oil which was purified by flash chromatography (5:1 hexanes/ethyl acetate) to give the title compound (1 .97 g, 40%) as a yellow solid.LRMS (m/z): 190 (M+1 )+.1H NMR delta (300 MHz, CDCI3): 4.19 (s, 3H), 8.57 (s, 1 H). |
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