Structure of 476014-76-3
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CAS No. : | 476014-76-3 |
Formula : | C5H9NO2 |
M.W : | 115.13 |
SMILES Code : | O=C1NCCC(O)C1 |
MDL No. : | MFCD09743648 |
InChI Key : | PRCAKTIAKXMBQF-UHFFFAOYSA-N |
Pubchem ID : | 11251988 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 8 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 32.11 |
TPSA ? Topological Polar Surface Area: Calculated from |
49.33 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-1.01 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-1.12 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.78 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.37 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.31 |
Log S (ESOL):? ESOL: Topological method implemented from |
0.08 |
Solubility | 139.0 mg/ml ; 1.21 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (Ali)? Ali: Topological method implemented from |
0.46 |
Solubility | 333.0 mg/ml ; 2.89 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.35 |
Solubility | 51.8 mg/ml ; 0.45 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.72 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.49 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With 1H-imidazole; dmap; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; | [0242] (6) <strong>[476014-76-3]4-hydroxypiperidin-2-one</strong> (0.80g, 6.94mmol) was dissolved in DMF. DMAP (0.085g, 0.694mmol) and imidazole(0.92g, 13.88mmol) were added. After the resulting mixture was stirred evenly, the solution of TBDPS-Cl (2.3g,8.33mmol) in THF was added and stirred at room temperature overnight. After the reaction completed, the reactionmixture was dried by spinning. Column chromatography afforded colorless oily liquid 0.65g, yield 60percent.[0243] 1H NMR (300 MHz, CDCl3) delta 7.70-7.49 (m, 4H), 7.53-7.30 (m, 6H), 4.24-4.09 (dt, J = 8.9,3.0 Hz, 1H),3.62-3.49(dt, J = 13.0, 6.7 Hz, 1H),3.20-3.08 (dtd, J = 11.7, 5.6, 2.3 Hz, 1H), 2.51-2.35 (d, J = 4.8 Hz, 2H),1.83-1.69(m,2H),1.17-1.00 (s,9H).MS(ESI) m/z :[(M+1)+,158.3] |
With 1H-imidazole; In N,N-dimethyl-formamide; at 20℃; for 1.25h;Inert atmosphere; | To a solution of <strong>[476014-76-3](±)-<strong>[476014-76-3]4-hydroxypiperidin-2-one</strong></strong> (7.5 g, 65.1 mmol) in DMF (60 mL) at room temperature were added imidazole (6 g, 88 mmol) and TBDPS-Cl (22 mL, 86 mmol). The mixture was then stirred at room temperature for 1 .25h. The mixture was then diluted with H20. Themixture was then extracted with EtOAc. The organic phase was then washed successively with H20, and brine, dried over Na2504, filtered, and concentrated to give the title compound, which was used in the next reaction without the need for further purification. MS (ESl+) m/z 354.3 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With methanol; sodium tetrahydroborate; at 0 - 20℃; | Step 1) 4-hydroxypiperidin-2-one [0258] To a solution of <strong>[50607-30-2]piperidine-2,4-dione</strong> (1 g, 8.8 mmol) in MeOH (25 mL) was added NaBH4 (1 g, 26.55 mmol) at 0°C. The reaction was stirred at rt overnight, then concentrated in vacuo. The residue was purified by a silica gel column chromatography (DCM/MeOH (v/v) = 5/1) to give the title compound as ayellow solid (960 mg, 87percent). LC-MS (ESI, pos. ion) m/z: 138[M + Na]+. |
80.0% | With methanol; sodium tetrahydroborate; at 0 - 20℃; for 1h; | [0239] <strong>[50607-30-2]2,4-piperidinedione</strong> (1.0g, 8.84mmol) was dissolved in MeOH. NaBH4 (0.5g, 13.26mmol) was added at 0°C,stirred at 0°C for 30min, and the reaction mixture was then placed at room temperature and stirred for 1h. TLC (DCM/Me-OH) was employed to monitor the reaction. After the reaction completed, it was quenched by adding water and dried byspinning. Column chromatography afforded white solid powder 0.8g, yield 80.0percent.[0240] 1H NMR (400 MHz, DMSO-d6) delta 7.52-7.28 (s, 1H), 5.06-4.78 (d, J = 3.5 Hz, 1H), 4.03-3.78 (dp, J = 7.2,3.9,3.3Hz, 1H),3.28-3.14 (m, 1H),3.09-2.91 (dtt, J = 7.4, 5.2, 2.2 Hz, 1H), 2.42-2.25 (dd, J = 17.1,4.7 Hz, 1H), 2.13-1.93 (dd, J= 17.1, 6.1 Hz, 1H), 1.83-1.66 (ddt, J = 12.7, 7.9,3.6 Hz, 1H), 1.69-1.47 (dt, J = 13.2, 6.4 Hz, 1H).MS(ESI)m/z :[(M+1)+,117.1], |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
89% | With pyridinium p-toluenesulfonate; In dichloromethane; at 35℃; for 48.0h; | Step 2) 4-((tetrahvdro-2H-pyran-2-yl)oxy)piperidin-2-one [0259] To a suspension of <strong>[476014-76-3]4-hydroxypiperidin-2-one</strong> (1.4 g, 12.18 mmol),PPTS (367 mg, 1.462 mmol) in DCM (200 mL) was added DHP(4.1 g, 48.72 mmol). The reaction was stirred at 35°C for 48h, and then concentrated in vacuo. The resulted residue was purified by a silica gel column chromatography (DCM/MeOH (v/v) = 10/1) to give the title compound as a whitesoild (2.16 g, 89percent). LC-MS (ESI, pos. ion) m/z:200[M + H]+; HNMR (400 MHz, CDC13) delta (ppm): 1.50-1.70 (m,4H), 1.71-1.80 (m, 1H), 1.80-2.10 (m, 4H), 2.40-2.71 (m, 3H), 3.21-3.35 (m, 1H), 3.36-3.62 (m, 2H), 3.80-3.95 (m, 1H), 4.11-4.20 (m,lH), 4.65-4.79 (m,lH), 6.50 (s, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
48% | With di-isopropyl azodicarboxylate; triphenylphosphine; In tetrahydrofuran; at 0 - 27℃; for 16.16h; | A solution of DIAD (5.3 g, 26.4 mmol) in dry THF (20 mL) was added to a solution of (<strong>[476014-76-3]4-hydroxypiperidin-2-one</strong> 41 (2.20 g, 19.4 mmol), 4-nitro-1H-pyrazole (2.0 g, 17.6 mmol) and triphenyiphosphine (6.9 g, 26.4 mmol) in dry THF (80 mL) drop-wise at 0°C over a period of 10 mm. The mixture was then stirred at room temperature for 16h. Solvents evaporated under reduced pressure to obtain a crude solid, which was purified by flash chromatography on silica gel using ethyl acetate as eluent to obtain 3 4-(4-nitro- 1H-pyrazol-1-yl)piperidin-2-one 42 (1.8 g, 48percent yield) as a white solid. ?H NMR (400 MHz, DMSO-d6): 8.96 (s, 1H), 8.31 (s, 1H), 7.71 (s, 1H), 4.83-4.79 (m, 1H), 3.25-3.15 (m, 2H), 2.69-2.67 (m, 2H), 2.20-2.17 (m, 1H), 2.13-2.06 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19% | With potassium phosphate; copper(l) iodide; dimethylaminoacetic acid; In N,N-dimethyl-formamide; at 100℃; for 264.0h;Inert atmosphere; | A suspension of ieri-butyl 4-(10-bromo-2-oxo-l,2-dihydropyrimido[l,2-b]indazol-4-yl)piperidine-l- carboxylate (200 mg, 447 muiotaetaomicron), rac-5-hydroxypiperidin-2-one (61.8 mg, 537 muiotaetaomicron), tripotassium phosphate (154 mg, 1.12 mmol), 2-(Dimethylamino)acetic acid (9.22 mg, 89.4 muiotaetaomicron) and copper(I) iodide (17.0 mg, 89.4 muiotaetaomicron) in 2.0 mL A^ -Dimefhylformamide was stirred 11 days at 100 °C under argon. After cooling to RT, the mixture was filtered and purified by preparative HPLC (gradient acetonitrile/water with 0.1 percent trifluoroacetic acid). Evaporation of the combined product fractions yielded the title compound. The obtained amout was 40.0 mg (100 percent purity, 19 percent of theory) LC-MS (Method 4): Rt = 1.09 min; MS (ESIneg): m/z = 480 [M-H]" |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With palladium diacetate; potassium carbonate; 4,5-bis(diphenylphos4,5-bis(diphenylphosphino)-9,9-dimethylxanthenephino)-9,9-dimethylxanthene; In 1,4-dioxane;Inert atmosphere; Heating; | General procedure: Potassium carbonate or caesium carbonate (1.5-2.5 eq.) was baked in a reaction vessel under reduced pressure. It was cooled to RT and flooded with argon. Palladium acetate (0.1-0.36 eq.), 9,9-dimethyl-4,5-bis(diphenylphosphino)xanthene (Xantphos, 0.18-0.36 eq.) and dioxane (0.04-0.12M) were added, and the suspension was degassed in an argon stream at room temperature for 10 min. Subsequently, the appropriate amide (1.0-1.2 eq.) and the appropriate 7-chloro-4-oxo-1,4-dihydro-1,8-naphthyridine (1.0 eq.) were added. The mixture was stirred at 80-110° C. for 1 h (or until conversion was complete by analytical HPLC or thin-layer chromatography with appropriate eluent mixtures). The mixture was cooled to RT and all volatile components were removed under reduced pressure, or alternatively the reaction mixture was poured into water, the pH was adjusted to pH 1 with 1M aqueous hydrochloric acid, the mixture was extracted with ethyl acetate, the combined organic phases were washed with saturated aqueous sodium chloride solution, dried over magnesium sulphate and filtered, and the solvent was removed under reduced pressure. The crude product was then purified either by normal phase chromatography (eluent: cyclohexane/ethyl acetate mixtures or dichloromethane/methanol mixtures) or preparative RP-HPLC (water/acetonitrile gradient). According to GP2, 150 mg (283 mumol) of the compound from Example 80A were reacted with 39.1 mg (340 mumol) of <strong>[476014-76-3]rac-<strong>[476014-76-3]4-hydroxypiperidin-2-one</strong></strong> in the presence of 58.7 mg (425 mumol) of potassium carbonate, 13 mg (57 mumol) of palladium(II) acetate and 33 mg (57 mumol) of Xantphos in 2.5 ml of dioxane. The crude product was purified by means of preparative HPLC (column: Chromatorex C18, 10 mum, 125*40 mm, solvent: acetonitrile/0.1percent formic acid gradient; (0 to 3 min. 10percent acetonitrile to 40 min. 90percent acetonitrile and a further 3 min. 90percent acetonitrile), and 113 mg (65percent of theory, 100percent purity) of the title compound were obtained. 1H NMR (400 MHz, DMSO-d6) delta [ppm]=11.38-11.31 (m, 1H), 8.89 (s, 1H), 8.67 (d, 1H), 8.15-8.08 (m, 1H), 7.94-7.76 (m, 1H), 7.68-7.56 (m, 2H), 7.41-7.24 (m, 3H), 6.51-6.38 (m, 1H), 5.10-5.01 (m, 1H), 4.11-4.01 (m, 1H), 3.69-3.57 (m, 1H), 3.50-3.38 (m, 1H), 2.84-2.72 (m, 1H), 2.46-2.37 (m, 1H), 1.99-1.87 (m, 1H), 1.78-1.66 (m, 1H). LC-MS (Method 3): Rt=2.12 min; 609 [M+H]+. 100 mg of the title compound (racemic diastereomer mixture) were separated into the enantiomeric diastereomers by chiral HPLC (preparative HPLC: column: Daicel Chiralpak ID 5 mum 250×50 mm; eluent: 50percent isohexane, 20percent ethanol; temperature: 40° C.; flow rate: 15 ml/min; UV detection: 220 nm). This gave (in the sequence of elution from the column) 22 mg of diastereomer 1 (99percent de) Rt=8.70 min, 24 mg (99percent de) of diastereomer 2 Rt=11.80 min, 24 mg (99.5percent de) of diastereomer 3 Rt=6.47 min, and 24 mg (99.5percent de) of diastereomer 4 Rt=5.94 min. [Analytical HPLC: column: Daicel Chiralcel OZ-H 5 mum 250×4.6 mm; eluent: 50percent isohexane, 50percent ethanol; temperature: 40° C.; flow rate: 1 ml/min; UV detection: 220 nm] Example 253 1-(2,4-Difluorophenyl)-N-[1-(2,6-difluorophenyl)-2,2,2-trifluoroethyl]-7-[4-hydroxy-2-oxopiperidin-1-yl]-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxamide (diastereomer 1) 1H NMR (400 MHz, DMSO-d6) delta [ppm]=11.39-11.31 (m, 1H), 8.89 (s, 1H), 8.67 (d, 1H), 8.15-8.09 (m, 1H), 7.94-7.76 (m, 1H), 7.68-7.57 (m, 2H), 7.41-7.27 (m, 3H), 6.51-6.39 (m, 1H), 5.10-5.04 (m, 1H), 4.12-4.01 (m, 1H), 3.69-3.59 (m, 1H), 3.48-3.38 (m, 1H), 2.83-2.72 (m, 1H), 2.47-2.37 (m, 1H), 1.99-1.88 (m, 1H), 1.79-1.67 (m, 1H). LC-MS (Method 3): Rt=1.99 min; 609 [M+H]+. Example 254 1-(2,4-Difluorophenyl)-N-[1-(2,6-difluorophenyl)-2,2,2-trifluoroethyl]-7-[4-hydroxy-2-oxopiperidin-1-yl]-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxamide (diastereomer 2) 1H NMR (400 MHz, DMSO-d6) delta [ppm]=11.34 (br. d, 1H), 8.89 (s, 1H), 8.67 (d, 1H), 8.15-8.09 (m, 1H), 7.93-7.76 (m, 1H), 7.68-7.57 (m, 2H), 7.40-7.26 (m, 3H), 6.50-6.39 (m, 1H), 5.10-5.02 (m, 1H), 4.12-4.01 (m, 1H), 3.68-3.57 (m, 1H), 3.50-3.39 (m, 1H), 2.84-2.72 (m, 1H), 2.47-2.37-(m, 1H), 2.00-1.88 (m, 1H), 1.78-1.66 (m, 1H). LC-MS (Method 3): Rt=2.00 min; 609 [M+H]+. Example 255 1-(2,4-Difluorophenyl)-N-[1-(2,6-difluorophenyl)-2,2,2-trifluoroethyl]-7-[4-hydroxy-2-oxopiperidin-1-yl]-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carboxamide (3rd diastereomer) 1H NMR (400 MHz, DMSO-d6) delta [ppm]=11.38-11.32 (m, 1H), 8.89 (s, 1H), 8.67 (d, 1H), 8.16-8.07 (m, 1H), 7.95-7.75 (m, 1H), 7.68-7.57 (m, 2H), 7.41-7.26 (m, 3H), 6.51-6.39 (m, 1H), 5.11-5.02 (m, 1H), 4.11-4.01 (m, 1H), 3.69-3.58 (m, 1H), 3.48-3.38 (m, 1H), 2.84-2.72 (m, 1H), 2.48-2.37 (m, 1H), 2.00-1.88 (m, 1H), 1.79-1.67 (m, 1H). LC-MS (Method 3): Rt=1.99 min; 609 [M+H]+. Example 256 1-(2,4-Difluorophenyl)-N-[1-(2,6-difluorophenyl)-2,2,2-trifluoroethyl]-7-[4-hydroxy-2-oxopiperidin-1-yl]-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbox... |
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