Structure of 465529-56-0
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CAS No. : | 465529-56-0 |
Formula : | C8H7BrN2 |
M.W : | 211.06 |
SMILES Code : | CN1N=C2C=CC(Br)=CC2=C1 |
MDL No. : | MFCD09870047 |
InChI Key : | QFZOHVHNTZTZMJ-UHFFFAOYSA-N |
Pubchem ID : | 11514007 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 48.7 |
TPSA ? Topological Polar Surface Area: Calculated from |
17.82 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.12 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.26 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.34 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.19 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.11 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.2 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.18 |
Solubility | 0.14 mg/ml ; 0.000664 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.27 |
Solubility | 1.13 mg/ml ; 0.00536 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.33 |
Solubility | 0.0985 mg/ml ; 0.000467 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.98 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.54 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
36%; 52% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; sodium hydride; In tetrahydrofuran; at 20℃; for 3h; | The A14-1 (590mg, 2.99mmol) was dissolved in tetrahydrofuran (10mL), was added NaH in the case of an ice bath with stirring (180mg80%, 6.00mmol),After stirring for 30 minutes was added CH3I (468mg, 3.30mmol), stirring was continued for 3 hours, raised to room temperature, water (20 mL), ethyl acetate (20mL × 3)Extraction, the organic phase was washed with saturated brine (50mL × 3), dried over anhydrous sodium sulfate, and spin dry solvent, the residue was purified by column chromatography (petroleum ether: ethyl acetate= 10:1-3:1) to give A14-2 (230mg, 36%) and A14-3 (330mg, 52%).A14-2: off-white solid. 1HNMR (400MHz, DMSO) delta8.33 (s, 1H), 7.96-7.95 (m, 1H), 7.57 (d, J = 9.2Hz,1H), 7.31-7.28 (m, 1H), 4.16 (s, 3H).A14-3: white solid. |
29%; 42.5% | 5-Bromo-1-methyl-1 H-indazole (ii) and 5-Bromo-2-methyl-2H-indazole (iii)To a solution of 5-bromo-1 H-indazole (0.19 g, 0.94 mmol) in 3 mL THF at 0 0C was added NaH (0.04 g, 1.03 mmol). The reaction solution was stirred at this temperature for 1 hour before methyl iodide (0.09 mL, 1.41 mmol) was added at 0 0C. The reaction was allowed to warm to room temperature slowly and stirred for 2 hours, quenched with water and concentrated in vacuo. The residue was diluted with water and extracted with DCM twice. The organic layers were combined, dried over Na2SO4 and concentrated. The crude product was purified by flash chromatography (hexane:EtOAc = 10:1 ) to give the title compound ii (88.7 mg, 42.5 %) and iii (60.9 mg, 29 %) as two white solids, ii: 1H-NMR (400MHz, DMSO- Cf6) delta ppm 8.02 (d, 1 H), 7.99 (d, 1 H), 7.64 (d, 1 H), 7.50 (dd, 1 H), 4.04 (s, 3H). LCMS(method A): [MH]+ = 21 1/213, tR = 5.19 min. iii: 1H-NMR (400MHz, DMSO-Cf6) delta ppm 8.33 (s, 1 H), 7.95 (d, 1 H), 7.57 (d, 1 H), 7.30 (dd, 1 H), 4.16 (s, 3H). LCMS (method A): [MH]+ = 21 1/213, tR = 4.95 min. | |
29%; 42.5% | To a solution of 5-bromo-1 H-indazole (0.19 g, 0.94 mmol) in 3 ml_ of THF at 0 QC was added NaH (0.04 g, 1 .03 mmol). The reaction mixture was stirred at this temperature for 1 h before the addition of methyl iodide (0.09 ml_, 1 .41 mmol) at 0 QC. The reaction was allowed to warm to rt slowly and stirred for 2 h, quenched with water and concentrated in vacuo. The residue was diluted with water and extracted with DCM twice. The organic layers were combined, dried over Na2SO4 and concentrated. The crude products were purified by flash chromatography (hexane:EtOAc = 10:1 ) to give the title compound ii (88.7 mg, 42.5 %) and iii (60.9 mg, 29 %) as white solid, ii: 1H-NMR (400MHz, DMSO-d6) Dppm 8.02 (d, 1 H), 7.99 (d, 1 H), 7.64 (d, 1 H), 7.50 (dd, 1 H), 4.04 (s, 3H). LCMS (method A): [MH]+ = 21 1/213, tR = 5.19 min. iii: 1H-NMR (400MHz, DMSO-Cf6) deltappm 8.33 (s, 1 H), 7.95 (d, 1 H), 7.57 (d, 1 H),7.30 (dd, 1 H), 4.16 (s, 3H). LCMS (method A): [MH]+ = 21 1/213, tR = 4.95 min. |
Scheme 5:F G R Me HI R Et JK R Pr LM R iPr N Sodium hydride (60% in oil, 1.5 g, 37.5 mmol, 1.2 equiv) was added to a solution of 5- bromoindazole F (6 g, 30.6 mmol, 1 equiv) in DMF (60 mL) at RT. After stirring for 30 min, methyl iodide (2.83 mL, 45.9 mmol, 1.5 equiv) was added and the reaction stirred for another 2 h at RT. The reaction was quenched with sat. NaHC03, extracted with EtOAc (lx), dried over MgS04, filtered, and concentrated under reduced pressure to give a mixture of JV-l and N-2 methylated 5-bromoindazoles G and H, which were separated by silica-gel chromatography using 0?30 % EtOAc/hexanes as eluent. The Nl -alkylated regioisomer G elutes first, followed by the N2-methyl regioisomer H. Other N-l -alkylated 5-bromoindazoles (I, , M) were prepared by the same procedure, substituting the appropriate electrophile for methyl iodide (ethyl iodide, i-propyl iodide, n-propyi iodide). | ||
[000842] To a solution of 5-bromo-lH-indazole, 202A, (4.92 g, 25.0 mmol) in THF (300 mL) at 0 C was added NaH (1.10 g, 27.5 mmol). The reaction solution was stirred at this temperature for 1 hour before methyl iodide (5.32 g, 37.5 mmol) was added at 0 C. The reaction was allowed to warm to room temperature slowly, stirred for 2 hours, and quenched with water and concentrated in vacuo. The residue was diluted with water and extracted with dichloromethane (80 mL x 2). The organic layers were combined, dried over anhydrous sodium sulfate, and concentrated. The crude product was purified with flash column chromatography on silica gel (ethyl acetate in petroleum ether, 10% v/v) to give Compound 202B and Compound 202C. | ||
[000791j To a solution of Compound 125A (4.92 g, 25.0 mmol) in THF (300 mL) was added NaH (1.10 g, 27.5 mmol) at 0 C. The reaction solution was stirred at this temperature for 1 h before methyl iodide (5.32 g, 37.5 mmol) was added at 0 C. The reaction was allowed to warm to room temperature slowly, stirred for 2 h, and quenched with water and concentrated in vacuo. The residue was diluted with water and extracted with dichloromethane (80 mL x 2). The organic layers were combined, dried over anhydrous sodium sulfate, and concentrated. The crude product was purified with flash column chromatography on silica gel (ethyl acetate in petroleum ether, 10% v/v) to give Compound 125B and Compound 125C. For Compound 125B: LC-MS (ESI) mlz: 211 [M+H] ?H-NMR (CDC13, 400 MHz): (5(ppm) 4.06 (s, 3H), 7.26-7.28 (m, 1H), 7.44-7.48 (m, 1H), 7.86-7.87 (m, 1H), 7.91 (s, 1H). For Compound 125C: LC-MS (ESI) mlz: 211 [M+H] ?H-NMR (CDC13, 400 MHz) (5(ppm) 4.20 (s, 3H), 7.3 1-7.34 (m, 1H), 7.56-7.58 (m, 1H), 7.79-7.80 (m,1H), 7.84 (s, 1H). | ||
Sodium hydride (60% in oil, 1.5 g, 37.5 mmol) was added to a solution of 5-bromoindazole D (6 g, 30.6 mmol) in DMF (60 mL) at RT. After stirring for 30 min, methyl iodide (2.83 mL, 45.9 mmol) was added and the reaction stirred for another 2 h at RT. The reaction was quenched with sat. NaHCO3 (aq), extracted with EtOAc (1×), dried over MgSO4, filtered, and concentrated under reduced pressure to give a mixture of N-1 and N-2 methylated 5-bromoindazoles E and F, which were separated by silica-gel chromatography using 0?30% EtOAc/hexanes. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
42%; 44% | Example 2004 Compound 2004A (1 g, 5.07 mmol) was dissolved in 20 mL of THF and reacted with sodium methoxide (10 mL, 5.07 mmol). After 30 min, iodomethane (1.3 mL, 20.3 mmol) was added. Reaction mixture was stirred for 5 hours at room temp, then it was added to ethyl acetate and water. The aqueous layer was extracted with ethyl acetate twice. All the organic layers were combined, washed with brine solution and dried over sodium sulfate. The solvent was removed by rotary evaporator and further purified by SiO2 column chromatography to give 2004B (470 mg, 44% yield) and 2004C (450 mg, 42% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
38.6% | General procedure: NaH 60% in oil (100.92 mg; 2.52 mmol; 1.10 eqf.) is added portionwise to a solution of 6-chloro-1 H-pyrrolo[2,3-b]pyridine (350.00 mg; 2.29 mmol; 1.00 eq.) in anhydrous DMF (5.00 mL) at 0~5C. After stirring for 30 minutes CH3I (0.10 mL; 1.61 mmol; 0.70 eqf.) is added dropwise. After addition, RM is stirred at 0-5C for 30 min and then at rt for 1 h. Reaction is quenched with water and extracted with EtOAc. Organic phase is washed with water, brine, dried over Na2SO4, filtered and concentrated to afford 6-chloro-1 -methyl-1 H- pyrrolo[2,3- 3]pyridine (332.00 mg; yield 85 %; 98 % by UPLC) as a brown oil. The crude product is used in the next step | |
Preparation 112 3-(1-Methyl-1H-indazol-5-yl)-2-propenenitrile The 1-methyl isomer from Preparation 111(100 mg, 0.47 mmol) was taken up in dioxan (6 ml), and potassium carbonate (72 mg, 0.52 mmol), acrylonitrile (0.035 ml, 0.52 mmol), Pd2(dba)3 (43 mg, 0.047 mmol) and PtertBu3 (0,038 ml, 0.16 mmol) were added in sequence. | ||
In ethyl acetate; at 20℃; for 20h; | General procedure: To a suspension of 5-bromo-4-chloro-1H-indazole (10.0 g, 43.2 mmol) in EtOAc (200 mL) was added trimethyloxonium tetrafluoroborate (9.58 g, 64.8 mmol) at RT. The mixture was stirred at RT for 20 h, quenched with sat. NaHCO 3, and extracted with EtOAc. The organic layer was washed with brine, dried over anhydrous Na 2SO 4, filtered, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (gradient elution, 0 - 50% EtOAc/hexane) to give the title compound (9.16 g). MS: [M+H] + = 245, 247. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Preparation 1 Synthesis of 5-bromo-2-methyl-2H-indazole Add at room temperature under nitrogen, trimethyloxonium tetrafluoroborate (229.34 g, 1.52 mol) portion wise to a mixture of 5-bromo-1H-indazole (199.6 g, 1.01 mol) in ethyl acetate (3.04 L, 31.06 mol), stir 2.5 h and filter to give a white solid. Wash the recovered solid twice with ethyl acetate (500 mL) and then add it portion wise to a cooled aqueous solution of 2 M sodium hydroxide (3.80 L, 7.60 mol) in an ice bath. Stir the mixture for 1 h, sonicate for 15 min., filter and wash the recovered solid twice with water (200 mL). Dry the solid overnight under vacuum, slurry in dichloromethane (1 L) and filter. Concentrate the filtrate and purify by silica gel chromatography eluding with dichloromethane to give the title compound as a yellow solid (149.77 g, 70%). MS (m/z): 211, 213 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With potassium acetate;dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; In 1,4-dioxane; at 100℃; for 1.5h;Inert atmosphere; | Preparation 3 Synthesis of 2-methyl-5-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-2H-indazole Add potassium acetate (207.16 g, 2.11 mol) in one portion to a stirring solution of <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> (148.5 g, 0.703 mol) and bis(pinacolato)diboron (196.54 g, 0.77 mol) in 1,4-dioxane (1.62 L). Bubble nitrogen through the suspension for 20 min, add (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) chloride:dichloromethane (17.24 g, 21.11 mmol) in one portion and heat at 100 C. for 1.5 h. Cool, filter through Celite using ethyl acetate (1 L) and concentrate. Purify the residue by silica gel chromatography, gradient eluding from 50:50 to 20:80 using n-hexane:methyl t-butyl ether to give the title compound as a yellow solid (124.79 g, 64%) which is used without further purification. Concentrate impure fractions and triturate the recovered solid with n-heptane to give additional amounts of the title compound as a white solid (32.36 g, 12%). 1H-NMR (DMSO-d6): delta1.30 (s, 12H), 4.17 (s, 3H), 7.43 (dd, 1H), 7.53 (dd, 1H), 8.14 (t, 1H), 8.39 (s, 1H). |
410 mg | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In dimethyl sulfoxide; at 90℃;Inert atmosphere; | The A14-2 (190mg, 0.90mmol) was dissolved in DMSO (10mL), was added bis (pinacolato) borate (274mg, 1.08mmol), KOAc(265mg, 2.70mmol), Pd (dppf) 2Cl2 (37mg, 0.045mmol), purged with nitrogen, stirred overnight at 90 deg.] C, cooled to room temperature, celiteSoil filtration, the filtrate was diluted with ethyl acetate (20 mL), saturated brine (20mL × 3), dried over anhydrous sodium sulfate, and sodium sulfate was filtered, the solvent was spin-dryTo a black oil (410mg), was used directly in the next step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | tetrakis(triphenylphosphine) palladium(0); In 1,4-dioxane; at 110℃; for 0.25h;Inert atmosphere; | Preparation 4 Synthesis of 2-methyl-5-trimethylstannanyl-2H-indazole Add tetrakis(triphenylphosphine)palladium (0.26 g, 0.22 mmol) to a mixture of <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> (0.94 g, 4.43 mmol) and hexamethylditin (1.02 mL, 4.88 mmol) in 1,4-dioxane (5 mL). Flush with nitrogen and heat in a microwave at 110 C. for 15 min. Prepare similarly two other batches from respectively tetrakis(triphenyl-phosphine)palladium (0.29 g, 0.25 mmol), <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> (1.07 g, 5.07 mmol), hexamethylditin (1.16 mL, 5.58 mmol) in 1,4-dioxane (5 mL) and tetrakis(triphenylphosphine)palladium (0.25 g, 0.22 mmol), <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> (0.92 g, 4.36 mmol), hexamethylditin (1.00 mL, 4.80 mmol) in 1,4-dioxane (5 mL). Combine the three batches and purify by silica gel chromatography gradient eluding from 15:85 to 80:20 using ethyl acetate:iso-hexane, and then further purify with a second silica gel chromatography, gradient eluding from 15:85 to 30:70 using ethyl acetate:iso-hexane to give the title compound as an oil which crystallizes on standing (1.68 g, 41%). MS (m/z): 293-301 cluster (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With sodium hydride; In tetrahydrofuran; at -10 - 20℃; | 5-Bromo-2-methyl-2H-indazole (210.0 g, 1.0 mol, 1.0 eq)Dissolve NaH (60%, 40.0 g, 1.0 mol, 1.0 eq) in tetrahydrofuran (3.0 L).Acetone (220.0 mL, 3.0 mol, 3.0 eq) was slowly added dropwise to the reaction solution.The dropping temperature was controlled below -10C, the addition was complete, the temperature was raised to room temperature, and the reaction was stirred overnight.The reaction was completed by TLC until the reaction was complete. The reaction was quenched with saturated aqueous ammonium chloride and extracted with ethyl acetate. The organic phases were combined and dried over anhydrous sodium sulfate. The crude product was concentrated by column chromatography (PE/EA= 10/1-1/2)Compound 2-(5-bromo-2-methyl-2H-indazol-3-yl)propan-2-ol was obtained as a brown solid (234.5 g, yield: 87%, purity: 99.8%). |
31% | To a stirred solution of <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> (30a) (300 mg, 1.42 mmol) in THF (10.0 mL) was added LDA (2.0 M in THF, 2.13 mL, 4.26 mmol) at -78 C. The reaction mixture was stirred at 0 C. for 10 min and then cooled to -78 C. Acetone (124 mg, 2.14 mmol) was added to the reaction mixture at -78 C. The reaction was then allowed to warm to ambient temperature and stirred for 18 h. LCMS analysis showed consumption of the starting material with formation of the desired product mass. The reaction was quenched with saturated aqueous NaHCO3 (10 mL) and the layers were separated. The aqueous layer was extracted with EtOAc (3*10 mL). The combined organic phases were washed with brine, dried over Na2SO4, filtered, and concentrated. The residue was purified by flash chromatography (ISCO, 20 g SiO2, 0-100% EtOAc/petroleum ether) to provide 2-(5-bromo-2-methyl-2H-indazol-3-yl)propan-2-ol (Int-61) (120 mg, 31% yield) as a colorless oil. m/z (ESI+) for (C11H13BrN2O), 270.9 (M+H)+. | |
20 g | Into a 1 L 3 -necked round-bottom flask purged and maintained with an inert atmosphere of nitrogen were placed <strong>[465529-56-0]5-bromo-2-methyl-2H-indazole</strong> A (32.0 g, 128.9 mmol, 1.0 equiv., 85%) in tetrahydrofuran (300 mL). To the solution was added LDA (97.5 mL, 1.5 equiv., 2 M) at -78C. The solution was stirred at 0-5C for 10 min, then cooled to -78C. To the solution was added propan-2-one (11.3 g, 194.7 mmol, 1.5 equiv.). The resulting solution was stirred for 12 h at 25C. The reaction was then quenched with 100 mL of aqueous sodium bicarbonate. The resulting solution was extracted with 3x500 mL of ethyl acetate and the organic layers combined, dried with anhydrous Na2S04, and filtered. The filtrate was concentrated under vacuum, and the residue was applied onto a silica gel column and eluted with ethyl acetate/petroleum ether (1 : 10 to 1 :2). This resulted in 20 g (58%) of 2-(5-bromo-2-methyl-2H-indazol-3-yl)propan-2-ol B as a yellow oil: MS m/z M += 269 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Into a 500-mL round-bottom flask purged and maintained with an inert atmosphere of nitrogen were placed 5-bromo-2-nitrobenzaldehyde (30.0 g, 130.4 mmol, 1.0 equiv.), methanamine (71.5 mL, 1.1 equiv.), and propan-2-ol (300 mL). The resulting solution was stirred for 4 h at 80C. The mixture was cooled to rt and tributylphosphine (98 mL, 3.0 equiv.) was added. The resulting solution was stirred for 12 h at 80C and then extracted with 500 mL of ethyl acetate. The resulting mixture was washed sequentially with 300 mL of NH4CI (aq.) and 300 mL of brine. The mixture was dried over anhydrous sodium sulfate and concentrated under vacuum. The residue was applied onto a silica gel column and eluted with ethyl acetate/petroleum ether (1 :4). This resulted in 32 g (crude) of 5- bromo-2-methyl-2H-indazole A as a red oil: MS m/z MH+= 211 |