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Chemical Structure| 38116-61-9 Chemical Structure| 38116-61-9

Structure of 38116-61-9

Chemical Structure| 38116-61-9

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Product Details of [ 38116-61-9 ]

CAS No. :38116-61-9
Formula : C7H7NO3
M.W : 153.14
SMILES Code : O=C(O)C1=C(O)N=C(C)C=C1
MDL No. :MFCD00460503
InChI Key :XRIHTJYXIHOBDQ-UHFFFAOYSA-N
Pubchem ID :94960

Safety of [ 38116-61-9 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H319
Precautionary Statements:P305+P351+P338

Computational Chemistry of [ 38116-61-9 ] Show Less

Physicochemical Properties

Num. heavy atoms 11
Num. arom. heavy atoms 6
Fraction Csp3 0.14
Num. rotatable bonds 1
Num. H-bond acceptors 4.0
Num. H-bond donors 2.0
Molar Refractivity 38.19
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

70.42 Ų

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

0.86
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

1.31
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

0.79
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

-0.96
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

0.7
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

0.54

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-1.95
Solubility 1.71 mg/ml ; 0.0112 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-2.39
Solubility 0.625 mg/ml ; 0.00408 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-1.19
Solubility 9.8 mg/ml ; 0.064 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.3 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.56

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.49

Application In Synthesis of [ 38116-61-9 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 38116-61-9 ]

[ 38116-61-9 ] Synthesis Path-Downstream   1~35

  • 1
  • [ 186581-53-3 ]
  • [ 38116-61-9 ]
  • [ 51146-06-6 ]
  • 2
  • [ 4241-27-4 ]
  • [ 38116-61-9 ]
  • 3
  • [ 67-56-1 ]
  • [ 38116-61-9 ]
  • [ 51146-06-6 ]
YieldReaction ConditionsOperation in experiment
64.1% With sulfuric acid; at 0℃; for 21h;Reflux; To a solution of <strong>[38116-61-9]2-hydroxy-6-methylnicotinic acid</strong> (10.0 g, 0.0653 mole) in methanol (100 mL), sulfuric acid (3.5 mL) was added drop wise at 0 C and the mixture was stirred for 21 h under reflux. The reaction mixture was concentrated under reduced pressure, the residue was neutralized with saturated aqueous sodium bicarbonate solution under ice-cooling, and the mixture was extracted with 5 % methanol in chloroform (200 mL x 3). Organic layer was washed with brine solution (50 mL) and dried over Na2S04 and the solvent was concentrated under vacuum to afford the title compound. (0233) Yield: 7.0 g, 64.1%; 1H - NMR (DMSO- 6, 400 MHz) d ppm: 2.23 (s, 3H), 3.70 (s, 3H), 6.09 - 6.11 (d, J = 7.24 Hz, 1H), 7.98 - 8.00 (d, J = 7.36 Hz, 1H), 12.10 (s, 1H); Mass (m/z): 168.1 (M+H)+.
  • 4
  • [ 38116-61-9 ]
  • 2-hydroxyl-3-hydroxymethyl-6-methylpyridine [ No CAS ]
YieldReaction ConditionsOperation in experiment
38 g With lithium aluminium tetrahydride; In tetrahydrofuran; at 70℃; for 1h;Inert atmosphere; Reference Production Example 40 (0661) To a mixture of 50.0 g of <strong>[38116-61-9]2-hydroxy-6-methylnicotinic acid</strong> and 500 ml tetrahydrofuran, 18.6 g of lithium aluminum hydride was added in a nitrogen atmosphere at 70 C. for 1 hour. To the reaction mixture, 19 ml of water was added dropwise under ice cooling, followed by stirring at 0 C. for 1 hour. Furthermore, 16 ml of an aqueous 15% sodium oxide solution was added dropwise, followed by stirring at room temperature for 1 hour. The reaction mixture was filtered through Cerite and the filtrate was concentrated under reduced pressure to obtain 38.0 g of 2-hydroxy-3-hydroxymethyl-6-methylpyridine (hereinafter referred to as 40A). (0662) 1H-NMR (DMSO-D6) delta:6.82 (1H, d, J=6.8 Hz), 5.83 (1H, d, J=6.8 Hz), 4.25 (2H, s), 2.06 (3H, s).
38 g With lithium hydroxide; In tetrahydrofuran; at 70℃; for 1h;Inert atmosphere; In the 70 C, to 50.0g of 2-hydroxy-6-methyl-nicotinic acid and 500 ml mixture of tetrahydrofuran, is added in the nitrogen atmosphere 18.6g alchlor hydrogenation of 1 hour. Frozen under the, dropping to the reaction mixture 19 ml of water, then in the 0 C stirring 1 hour. Furthermore, dropping 16 ml of a 15% sodium hydroxide aqueous solution, followed by stirring at room temperature 1 hour. The reaction mixture is filtered through a Cerite, and the filtrate concentrated under reduced pressure, to obtain 38.0g of 2-hydroxy-3-hydroxymethyl-6-methylpyridine (called below 40A).
  • 5
  • [ 38116-61-9 ]
  • [ 51146-06-6 ]
  • 6
  • [ 38116-61-9 ]
  • [ 64-17-5 ]
  • [ 51146-04-4 ]
YieldReaction ConditionsOperation in experiment
27% With hydrogenchloride; In 1,4-dioxane; for 16h;Reflux; Preparation 211ethyl 2-hydroxy-6-methylpyridine-3-carboxylate To a solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (2.0 g, 13.06 mmol) in ethanol (20 mL), was added HCI in dioxane (10 mL) dropwise and the reaction was refluxed for 16 hours. The reaction was concentrated in vacuo and basified with saturated aqueous sodiumbicarbonate solution. The mixture was extracted with ethyl acetate (twice), the organic layers were combined, washed with water, brine, dried over sodium sulfate and concentrated in vacuo to afford the title compound as a white solid (650 mg, 27%). 1H NMR (400 MHz, DMSO-d6): O ppm 1.24 (t, 3H), 2.22 (s, 3H), 4.16 (q, 2H), 6.08 (d, 1H), 7.97(d, 1H).
  • 7
  • [ 38116-61-9 ]
  • [ 39853-81-1 ]
  • 8
  • [ 38116-61-9 ]
  • [ 117449-75-9 ]
YieldReaction ConditionsOperation in experiment
EXAMPLE 1; Step A:; A solution of NaOCl (1.2 L, of 5%) was cooled to 0 0C in ice bath. 2-hydroxy-6- methylpyrridine-3-carboxylic acid 1-1 (100 g, 0.65mol) was added in small portions. The resulting homogenous mixture was stirred at 0 0C for 1 hour and then at 1O0C for 5 hours. Another portion NaOCl(300 mL, of 5%) was added at O0C and the mixture was stirred at 100C overnight. The solution was acidified to pH = 1 with 12N HCl, and the resulting solid was filtered, washed with water, and oven dried to afford white solid product 1-2 (m/z (ES) (M+H)+= 188).
  • 10
  • [ 38116-61-9 ]
  • [ 100-51-6 ]
  • [ 147269-61-2 ]
YieldReaction ConditionsOperation in experiment
56% Diphenylphosphoryl azide (11.9 mL, 55 mmol) was added to a solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (7.65 g, 50 mmol) and triethylamine (7.7 mL, 55 mmol) in dry dioxane (100 mL) and the resulting solution was heated to reflux. After 16 h more triethylamine (7.7 mL, 55 mmol) and benzyl alcohol (5.7 mL, 50 mmol) were added and the solution was refluxed for a further 24 h. The reaction mixture was concentrated in vacuo and the residue was partitioned between methylene chloride (200 mL) and brine (100 mL), acidified to pH 1 with 10% HCl. The organic layer was washed with saturated NaHCO3 (2×100 mL), brine (100 mL), dried over Na2SO4 and filtered. After evaporating the solvent in vacuo, methanol (100 mL) and hexane (20 mL) were added to the residue, the solid was collected, washed with methanol (50 mL) and dried to give the title compound as a white solid (7.2 g, 56%). 1H-NMR (300 MHz, CDCl3) delta12.82 (s, 1H), 8.06 (d, J=7.0 Hz, 1H),7.69 (s, 1H), 7.42 (m, 5H), 6.09 (d, J=7.5 Hz, 1H), 5.22 (s, 2H), 2.32 (s, 3H).
  • 12
  • 2-amino-6-methyl-pyridine-nicotinic acid [ No CAS ]
  • [ 38116-61-9 ]
  • 13
  • [ 38116-61-9 ]
  • [ 75-36-5 ]
  • [ 51146-06-6 ]
YieldReaction ConditionsOperation in experiment
100% In methanol; Step A Methyl-2-hydroxy-6-methylpyridine-3-carboxylate Acetyl chloride (50 ml) was added cautiously to a stirred suspension of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (14.3 g, 93.44 mmol) in dry methanol (500 ml) and the resulting solution was heated to reflux. After 16 h the solution was evaporated in vacuo to give the title compound (15.62 g, 100%) as a solid: 1 H NMR (DMSO) shows the methyl singlet at delta 3.71.
  • 14
  • [ 67-56-1 ]
  • [ 38116-61-9 ]
  • [ 885277-48-5 ]
YieldReaction ConditionsOperation in experiment
79% Phosphorus oxybromide (21.53 g, 75 mmol) was added to the stirred solution of 2-hydroxy-6- methylnicotinic acid (5 g, 32.7 mmol), pyridine (0.475 mL, 5.88 mmol) in chlorobenzene (100 mL) at room temperature under nitrogen. The reaction mixture was refluxed for 1 h and concentrated under vacuum before treating with an excess of cold methanol. The solution was stirred for an additional 1 h and again concentrated under vacuum. The residue was dissolved in water and pH was adjusted to ~8.0 by adding K2CO3 before extraction of the product with CH2CI2. The organic layer was washed with water and brine solution, dried over anhydrous Na2S04. Filtrate was evaporated completely under reduced pressure to give crude residue. The resulted crude compound was purified by flash column chromatography (100-200 silica mesh, eluent was 30% EtOAc in pet ether) to obtained methyl 2-bromo-6-methylnicotinate (6.1 g, 79% yield) as colorless oil. 1H NMR (400 MHz, CDCI3): d 8.00 (d, /= 7.6 Hz, 1H), 7.18 (d, J = 8.0 Hz, 1H), 3.94 (s, 3H), 2.59 (s, 3H); LCMS (ES) m/z 230.0 (M+H)+
  • 15
  • Fmoc-D,L-Hcy(Trt)-OH [ No CAS ]
  • [ 38116-61-9 ]
  • [ 86123-10-6 ]
  • 2-{2-[(2-hydroxy-6-methyl-pyridine-3-carbonyl)-amino]-4-mercapto-butyrylamino}-3-phenyl-propionic acid [ No CAS ]
  • 16
  • [ 38116-61-9 ]
  • [ 853179-76-7 ]
  • 17
  • [ 38116-61-9 ]
  • [ 853179-88-1 ]
  • 18
  • [ 38116-61-9 ]
  • [ 173064-91-0 ]
  • 19
  • [ 38116-61-9 ]
  • (1,6-dimethyl-2-oxo-1,2-dihydropyridin-3-yl)carbamic acid benzyl ester [ No CAS ]
  • 20
  • [ 38116-61-9 ]
  • [ 147269-63-4 ]
  • 25
  • [ 38116-61-9 ]
  • 3-(2-phenethylamino)-6-methyl-1-(2-amino-6-methyl-5-methylenecarboxamidomethylpyridinyl)-2-pyridinone [ No CAS ]
  • 26
  • [ 38116-61-9 ]
  • L-374087 [ No CAS ]
  • 27
  • [ 38116-61-9 ]
  • [ 187237-49-6 ]
  • 28
  • [ 38116-61-9 ]
  • 3-(2-phenethylamino)-6-methyl-1-(2-tert-butylcarbonylamino-6-methyl-5-methylenecarboxamidomethylpyridinyl)-2-pyridinone [ No CAS ]
  • 29
  • [ 38116-61-9 ]
  • (6-methyl-5-[2-(6-methyl-2-oxo-3-phenylmethanesulfonylamino-2<i>H</i>-pyridin-1-yl)-acetylamino]-methyl}-pyridin-2-yl)-carbamic acid <i>tert</i>-butyl ester [ No CAS ]
  • 30
  • [ 38116-61-9 ]
  • [ 216979-24-7 ]
  • 31
  • [ 38116-61-9 ]
  • [ 187163-89-9 ]
  • 32
  • [ 38116-61-9 ]
  • L-373890 [ No CAS ]
  • 33
  • [ 38116-61-9 ]
  • 4-[2-(6-Methyl-2-oxo-3-phenylmethanesulfonylamino-2H-pyridin-1-yl)-acetylamino]-methyl}-piperidine-1-carboxylic acid tert-butyl ester [ No CAS ]
  • 34
  • [ 38116-61-9 ]
  • [ 117449-74-8 ]
  • 35
  • [ 38116-61-9 ]
  • [ 117450-13-2 ]
 

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