Structure of 351410-62-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 351410-62-3 |
Formula : | C7H6FNO2 |
M.W : | 155.13 |
SMILES Code : | O=CC1=C(OC)N=CC(F)=C1 |
MDL No. : | MFCD04972398 |
InChI Key : | YAGPZRLCMRMSFP-UHFFFAOYSA-N |
Pubchem ID : | 22678323 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 11 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.14 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 36.07 |
TPSA ? Topological Polar Surface Area: Calculated from |
39.19 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.67 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.72 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.46 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.36 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.9 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.22 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.53 |
Solubility | 4.61 mg/ml ; 0.0297 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.12 |
Solubility | 11.7 mg/ml ; 0.0756 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.37 |
Solubility | 0.669 mg/ml ; 0.00432 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.74 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.71 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
42% | With pyridine hydrochloride; at 145℃; for 0.166667h; | Preparation 12 l-Ethyl-5-fluoro-2-oxo-pyridine-3-carbaldehyde (a) 5-Fluoro-2-oxo-pyridine-3-carbaldehyde A flask containing 5-fluoro-2-methoxy-pyridine-3-carbaldeliyde (1.551 g, 10.0 mmol) and pyridine hydrochloride (6.9 g, 60.0 mmol) was heated at 1450C for 10 minutes. The molten mixture was congealed when cooled. Water and EtOAc were added and the pyridine hydrochloride was removed with the water-phase. The water phase was then extracted with EtOAc (3x) and the combined organic phases were dried over MgSO4. Evaporation gave 0.592 g (42 %) of 5-fluoro-2-oxo- pyridine-3-carbaldehyde. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of 25 mg (0.063 mmol) l-biphenyl-3-yl~5-[(4-methoxybenzyl)oxy]-2- methylpyridin-4(lH)-one in 1.2 ml of THF was added 94 mu (0.094 mmol) 1 M LiHMDS in THF. After 30 seconds, 9.8 mg (0.063 mmol) <strong>[351410-62-3]5-fluoro-2-methoxynicotinaldehyde</strong> was added. The reaction was quenched with 2 ml of water, extracted with 6 ml of EtOAc, and the organic layer was concentrated in vacuo. The residue was dissolved in 1 ml CH2CI2 and 1 ml TFA was added. The solution was concentrated in vacuo and purified by reverse phase HPLC to yield 1 -biphenyl- 3-yl-2-[2-(5-fluoro-2-methoxypyridin-3-yl)-2-hydroxyethyl]-5-hydroxypyridin-4(lH)-one. NMR delta (pprn)(DMSO-d6): 8.00-7.90 (2 H, m), 7.86 (1 H, s), 7.78 (3 H, d, J = 8.48 Hz), 7.71 (1 H, d, J = 8.95 Hz), 7.52 (3 H, t, J = 7.96 Hz), 7.47-7.39 (2 H, m), 6.79 (1 H, s), 4.73 (1 H, s), 2.94 (2 H, d5 J = 16.33 Hz), 2.73 (1 H, d, J = 10.74 Hz), 2.54 (3 H, s). HRMS (ESI positive) calc (M+H)+ 433.1558 found 433.1562. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium hydroxide; at 20℃; | General procedure: To 3,5-dimethyl-4-(lH-pyrrolo[2,3-b]pyridin-5- yl)isoxazole (P-0246, 0.08 g, 0.35 mmol) in methanol (10 mL) were added 2-chlorobenzaldehyde (0.07 g, 0.5 mmol) and potassium hydroxide (0.3 g, 0.01 mol). The reaction was stirred at room temperature overnight. The reaction was poured into water, extracted with ethyl acetate. The organic layer was washed with brine, and the organic layer was dried over sodium sulfate, concentrated, and purified with silica gel column chromatography eluting with 2% to 20% methanol in methylene chloride to give product (P- 0019, 0.090 g, 72.3%), MS (ESI) [M+H+]+ = 354.1 ; and product (P-0020, 4.4 mg, 4.4%), MS (ESI) [M+H+]+ = 367.8. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | With manganese(IV) oxide; In ethyl acetate; at 20℃; | To (5-fluoro-2-methoxy-pyridin-3-yl)-methanol (36, 8 g, 50.9 mmol) in 300 mL of ethyl acetate, manganese(IV) oxide (39.8 g, 458 mmol) was added and the mixture stirred at room temperature overnight. The reaction mixture was filtered through celite, and the celite bed rinsed with ethyl acetate. The filtrate was concentrated under vacuum, then passed through a plug of silica, eluting with 50% ethyl acetate in heptane to provide the desired compound as a light yellow solid (37, 4.5 g, 29.0 mmol, 57.0% yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylsilane; trifluoroacetic acid; In acetonitrile; at 80℃; for 18h; | To 3-methoxy-5-(5-methyl-1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-pyridin-2-ylamine (128, 1 equivalent) in 2 mL of acetonitrile, <strong>[351410-62-3]5-fluoro-2-methoxy-pyridine-3-carbaldehyde</strong> (37, 1 equivalent), triethylsilane (5 equivalents) and trifluoroacetic acid (6.9 equivalents) are added. The reaction is heated at 80 C. for 18 hours, then concentrated under vacuum and mixed with aqueous potassium carbonate and extracted with ethyl acetate. The organic layer is washed with water, brine, then dried over magnesium sulfate, filtered and the filtrate concentrated under vacuum. The resulting material is purified by silica gel column chromatography eluting with ethyl acetate and hexane. Appropriate fractions are combined and concentrated under vacuum to provide the desired compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
367 mg | With triethylsilane; trifluoroacetic acid; In acetonitrile; at 80℃; for 4h; | To 5-(1-benzenesulfonyl-5-bromo-1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-6-fluoro-pyridin-2-ylamine (167, 0.342 g, 0.741 mmol) in 10 mL of acetonitrile, <strong>[351410-62-3]5-fluoro-2-methoxy-pyridine-3-carbaldehyde</strong> (37, 0.118 g, 0.763 mmol), triethylsilane (0.529 mL, 3.71 mmol) and trifluoroacetic acid (0.286 mL, 3.71 mmol) were added. The reaction was heated at 80 C. for 4 hours, then concentrated under vacuum and combined with aqueous potassium carbonate and extracted with ethyl acetate. The organic layer was washed with water and brine, then dried over magnesium sulfate, filtered and the filtrate concentrated under vacuum. The resulting material was purified by silica gel column chromatography eluting with ethyl acetate and hexane. Appropriate fractions were combined and concentrated under vacuum to provide the desired compound as an off-white solid (168, 367 mg). MS (ESI) [M-H+]-=599.6 and 601.6. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylsilane; trifluoroacetic acid; at 80℃; | To 5-(5-bromo-1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-6-fluoro-pyridin-2-ylamine (173, 1 equivalent) and <strong>[351410-62-3]5-fluoro-2-methoxy-pyridine-3-carbaldehyde</strong> (37, 1 equivalent), triethylsilane (4 equivalents) and trifluoroacetic acid (4 equivalents) are added. The reaction is stirred at 80 C. for several hours, then concentrated under vacuum. The resulting material is taken up in ethyl acetate and extracted with addition of aqueous potassium carbonate. The organic layer is concentrated under vacuum, then triturated with dichloromethane to provide the desired compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
832 mg | With triethylsilane; trifluoroacetic acid; In acetonitrile; for 3h;Reflux; | In a round bottom flask, 6-amino-nicotinic acid methyl ester (90, 0.678 g, 4.46 mmol) was combined with <strong>[351410-62-3]5-fluoro-2-methoxy-pyridine-3-carbaldehyde</strong> (37, 0.532 g, 3.43 mmol), 10.6 mL of acetonitrile, trifluoroacetic acid (1.32 mL, 17.1 mmol) and triethylsilane (3.29 mL, 20.6 mol). The reaction was heated to reflux for 3 hours, then poured into water and extracted with ethyl acetate. The organic layer was washed with brine, dried over sodium sulfate, filtered and the filtrate concentrated under vacuum. The resulting material was purified by silica gel column chromatography eluting with ethyl acetate and hexane. Appropriate fractions were combined and concentrated under vacuum to provide the desired compound (91, 832 mg). MS (ESI) [M+H+]+=292.4. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
512 mg | With sodium chlorite; aminosulfonic acid; In 1,4-dioxane; water; at 20℃; for 0.0833333h; | In a round bottom flask, <strong>[351410-62-3]5-fluoro-2-methoxy-pyridine-3-carbaldehyde</strong> (37, 0.500 g, 3.22 mmol) was combined with sodium chlorite (0.6734 g, 5.957 mmol), 30 mL of 1,4-dioxane, 10 mL of water, and sulfamic acid (2.39 g, 24.6 mmol). The reaction mixture was stirred at room temperature for 5 minutes, then poured into 100 mL of water and extracted with 100 mL of ethyl acetate. The organic layer was washed with water, brine, then dried over magnesium sulfate, filtered and the filtrate concentrated under vacuum to provide the desired compound (150, 512 mg), used in the next step without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | In tetrahydrofuran; diethyl ether; at -78 - 5℃; for 4h; | Step 1: MeMgBr (3 M, 6.45 mL) in Et20 was added to a solution of 58-1 (1.00 g, 6.45 mmol) in THF (32 mL) at -78 C . The reaction was slowly warmed to 5 C over 4 hours, and then cooled back down to -78 C, and quenched by addition of saturated aqueous NH4C1 solution (20 mL). The mixture was warmed to room temperature and extracted with DCM (3 x 10 mL). The combined extracts were dried with Na2S04 and concentrated under reduced pressure. Flash chromatography (ISCO system, silica (24 g), 0-50% ethyl acetate in hexane) provided 58-2 (1.10 g, 6.43 mmol, 100% yield). |
88.83% | In tetrahydrofuran; diethyl ether; at -78 - 5℃; for 3h; | Step 1. To a solution of E-1-1 (1 g, 6.45 mmol) in THF (32.23 mL) was added MeMgBr (3 M, 6.45 mL) in Et20 at -78 C. Let slowly warm to 5 C over 3hr. Cooled down to -78 C and quenched by addition of saturated aqueous NH4Cl solution (20 mL). Warmed to room temperature and extracted with DCM (3 x 10 mL). Combined extracts were dried with Na2S04 and concentrated under reduced pressure. Flash chromatography (ISCO system, silica 24 g, 0-50% ethyl acetate in hexane) provide E-5-1 (980.2 mg, 5.73 mmol, 88.83% yield). |
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