Structure of 32968-78-8
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 32968-78-8 |
Formula : | C5H10ClNO3 |
M.W : | 167.59 |
SMILES Code : | O=C([C@H]1NC[C@H](O)C1)O.[H]Cl |
MDL No. : | MFCD09908038 |
InChI Key : | YEJFFQAGTXBSTI-HJXLNUONSA-N |
Pubchem ID : | 11205991 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 3.0 |
Molar Refractivity | 40.65 |
TPSA ? Topological Polar Surface Area: Calculated from |
69.56 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-2.37 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.79 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-3.07 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.67 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-1.38 |
Log S (ESOL):? ESOL: Topological method implemented from |
0.68 |
Solubility | 802.0 mg/ml ; 4.79 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (Ali)? Ali: Topological method implemented from |
1.45 |
Solubility | 4700.0 mg/ml ; 28.0 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
0.66 |
Solubility | 763.0 mg/ml ; 4.55 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-9.01 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.31 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; In tetrahydrofuran; water; at 0 - 20℃; for 18h; | To a solution of commercial L-beta-homohydroxyproline hydrochloride (245 mg, 1.35 mmol), triethylamine (1.13 ml, 8.09 mmol) in water (0.8 ml) and tetrahydrofuran (2 ml) at [0C] under argon, was added dropwise a solution of 4-phenylbenzoyl chloride (438 mg, 2.02 mmol) in tetrahydrofuran [(1] ml). The reaction mixture was allowed to warm to room temperature and was stirred 18 hours. It was then diluted with acetone-ethyl acetate (1-2) and washed with [HC1] [1N.] The organic phase was dried [(MGS04)] and concentrated to afford a mixture of desired product and 4-phenylbenzoyl acid. A small quantity of acid could be obtained by precipitation with ethyl acetate. ['H] NMR (DMSO): 1.82 (m, 1H), 2.11 (m, [1H),] 2.5 (m, [1H),] 2.81 (dd, J=15.6 Hz, [J=3.] 2, [1H),] 3.3 (m, [1H),] 3.51 (dd, [J=11.] 7 Hz, J=2.6 Hz, [1H),] 4.16 (m, [1H),] 4.40 (m, [1H),] 7. [30-8.] 00 (m, 9H). LC/MS: (ESI-): 280 (M-1-C02), 324 [(M-1)] (ESI+): 326 [(M+1)] HPLC purity: 84 % |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4.2 g (57%) | With sodium hydroxide; In tetrahydrofuran; water; ethyl acetate; | i 1-(tert-Butyl) 2-methyl (2S,4R)-4-hydroxy-1,2-pyrrolidinedicarboxylate In a flask was dissolved <strong>[32968-78-8](2S,4R)-4-Hydroxy-proline hydrochloride</strong> (5.4 g, 30 mmole) in a mixture of THF (200 ml), water (170 ml) and NaOH (30 ml, 2 M in water, 60 mmole). To this emulsion was added di-tert-butyldicarbonate (Boc2O, 6.54 g, 30 mmole), and the mixture was stirred vigorously for 1 hour. Ether (100 ml) was added and the phases were allowed to separate. The aqueous phase was extracted with an additional 100 ml of ether. The aqueous phase was discarded and the combined organic phases were washed with IM HCl (aq.) and potassium carbonate (saturated, aq.) and brine. The extract was dried with Na2SO4 and was concentrated in vaccuo to give a residue, which was purified on silica (Heptane:EtOAc 5:1 to 3:1 to 1:1 stepwise gradient, spots visualized with I2/MeOH). Evaporation of pure fractions were concentrated in vaccuo to give 4.2 g (57%) of the subtitle compound as a colorless oil. 1H-NMR (400 MHz, CDCl3) delta: 4.50 (1H, bs); 4.45-4.35 (1H, m); 3.74 (3H, s); 3.64 (1H, dd, J 11.7, 4.3 Hz); 3.59-3.42 (1H, m); 2.35-2.20 (1H, m); 2.14-2.03 (1H, m); 1.97 (1H, dd, J 23.3, 3.7 Hz); 1.44 (9H, d, J 18.9 Hz) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
92% | With thionyl chloride; at 0 - 20℃;Reflux; | Example 1 : methyl ("2S,4R)-4-hvdroxy-2-pyrrolidinecarboxylate hydrochloride To a solution of (2S,4R)- 4-hydroxy-2-pyrrolidinecarboxylic acid hydrochloride (1.0 g, 7.6 mmol) in methanol (25 mL) at 0 C was added thionyl chloride (0.83 mL, 1 1.4 mmol). The reaction was warmed to room temperature and heated at reflux overnight. After cooling to room temperature, the reaction mixture was concentrated to dryness to give the title compound (1.2 g, 92%) as a white solid. lH NMR (300 MHz, DMSO-<) delta 9.99 (br. s, 2H), 5.58 (br. s, 1H), 4.49-4.41 (m, 2H), 3.75 (s, 3H), 3.38 (dd, 1H), 3.07 (d, 1H), 2.23-2.04 (m, 2H) |
92% | With thionyl chloride; at 0℃;Reflux; | To a solution of <strong>[32968-78-8](2S,4R)-4-hydroxy-2-pyrrolidinecarboxylic acid hydrochloride</strong> (1.0 g, 7.6 mmol) in methanol (25 mL) at 0 C. was added thionyl chloride (0.83 mL, 11.4 mmol). The reaction was warmed to room temperature and heated at reflux overnight. After cooling to room temperature, the reaction mixture was concentrated to dryness to give the title compound (1.2 g, 92%) as a white solid. 1H NMR (300 MHz, DMSO-d6) delta 9.99 (br. s, 2H), 5.58 (br. s, 1H), 4.49-4.41 (m, 2H), 3.75 (s, 3H), 3.38 (dd, 1H), 3.07 (d, 1H), 2.23-2.04 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31 g | With hydrogenchloride; In diethyl ether; | Step (i)[3]: To a stirred solution of NBoc diol (57 g, 262.52 mmol) in ether (150 mL) was addedHCl in ether (50 mL) and stirred for overnight. The white solid was filtered and washed withether (50 mL). The filtrate was kept at -0 oc for 6 hand the solid was filtered and washed withether (25 mL). Both batches were combined and dried in the presence of P20s under reducedpressure to constant weight 4 (31 g). 1H NMR (D20): 1.94-2.01 (m, 1H), 2.14-2.19 (m, 1H),3.30-3.48 (m, 2H), 3.71-3.76 (m, 1H), 3.93-4.08 (m, 2H), 4.67-4.75 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | Synthesis of compound 5; Step(ii)[1]: The reaction was performed in a 5 necked 15 L glass reactor fitted with an overheadstirrer over an ice bath. To a stirred solution of 4 (450 g, 2.94 mole) in acetonitrile (8 L) wereadded Et3N (1 L, 7.2 mole) and ethyl trifluoroacetate (1000 g, 7.04 mole), and stirred at room temperature overnight. The white solid (Et3N.HC1) was filtered over sintered funnel and washedwith ethyl acetate ( 4 L). The organic solution was concentrated followed by co-evaporationwith toluene (2 L x 2) and dried under reduced pressure overnight in a 22 L rotary evaporator toobtain crude product as a gummy mass ( -600 g). Step (ii)[2]: Above obtained crude compound (2.94 mole) was dissolved in 2 L of anhyd.pyridine and transferred to the four necked 15 L flask. Another 6 L of anhyd. pyridine wasadded. This solution was cooled to -5 oc using ice bath followed by addition of DMTr-Cl (1000g, 2.95) portion wise under nitrogen atmosphere over 20 min. and the reaction mixture wasstirred at room temperature overnight. 12 L of water was added while stirring and let it stand for6 h. The compound was settled at the bottom of the flask as a brownish gummy mass. Waterpyridinelayer was decanted using transfer pump and the aqueous layer was extracted with ethylacetate (2 x 5 L). Combined the ethyl acetate extract with the viscous material remained in thereactor, after decanting water layer. Concentration of the solvent gave the correspondingproduct as viscous oil which was used for the next step without purification. Step (ii)[3]: To a stirred solution of trifluoroacetyl compound (2.94 mole) in MeOH (5 L) wasadded KOH (330 g, 5.88 mole) dissolved in water (2 L) drop wise over 30 min. and stirred atroom temperature for 1 h. Concentrated to 3 L volume followed by addition of 15 L of waterand allowed to stand overnight. The product was settled at the bottom as reddish brown viscousoil. Decanted the water using transfer pump followed by addition of 6 L of DCM to dissolve,washed with 5 L of water and separated the organic solvent. Concentration of the solventfollowed by silica gel column chromatography ( 4 Kg silica, eluent: hexane/ethyl acetate andethyl acetate/MeOH) purification gave compound 5 (1000 g, 81 %) as foamy yellowish whitesolid. 1H NMR (CDCb): 1.35-1.42 (m, lH), 1.65-1.70 (m, lH), 2.33 (br s, lH), 2.59-2.62 (m,lH), 2.72-2.75 (m, lH), 2.82-2.91 (m, 2H), 3.36-3.41 (m,lH), 3.71 (s, 6H), 4.1 (br s, lH), 4.525(d, J = 4.0 Hz, lH). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31 g | Step (iii)[l]: To a stirred solution of acid 8 (28 g, 27.514 mmol) trans hydroxyl prolinol4 (6.3 g,41.27 mmol) and HOBt (16.84 g, 110.06 mmol) in DCM/DMF (250 mL/250 mL) was addedDIEA (17 .75 g, 137.57 mmol) drop wise at room temperature over 5 min. and stirred for 30 min.To the above solution was added HBTU (13.05, 34.39 mmol) portion wise over 10 min. andstirred for 3 h. 100 mL of water was added followed by evaporation of DCM and then 500 mLof water was added and left at standing for 1 h. Decanted the turbid solution and the sticky solidwas ringed with water (100 mL x 3). The gummy material was dissolved 20% MeOH in DCM(500 mL) and concentrated followed by co-evaporation with toluene (100 ml x 2) to obtain thecorresponding product (31 g) as yellowish foamy solid. LCMS: Calculated: 1116.73 (M+),Found: 1117.7 (M++l), 1139.6 (M++Na). |